mRNA_P-canaliculata_contig10073.147.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A6H5KBQ9_9PHAE (PHB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBQ9_9PHAE) HSP 1 Score: 169 bits (427), Expect = 3.000e-49 Identity = 87/103 (84.47%), Postives = 92/103 (89.32%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQVGAHQPQQIKR 311
ESKYLSGVGVSRQRKAIVDGLRDSVQTFS+TIDGTSPKDVMDLLLLTQYFDMLRDVGQSSR++TVFLPHAPQSV +LQSAMRDGFMQ AG G Q + R
Sbjct: 262 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSETIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVASLQSAMRDGFMQGHAGSEGLASAQMMNR 364
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A6H5KP74_9PHAE (PHB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP74_9PHAE) HSP 1 Score: 160 bits (405), Expect = 8.160e-48 Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQVGAHQP 296
ESKYLSGVGVSRQRKAIVDGLRDSVQ F++ IDGTSPKDVMDLLLLTQYFDMLRDVGQSSR++TVFLPHAPQSV A+Q+AMRDGFMQ AG P
Sbjct: 97 ESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFMQGQAGSTETPPP 194
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: D8LDT1_ECTSI (PHB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT1_ECTSI) HSP 1 Score: 160 bits (405), Expect = 1.540e-45 Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQVGAHQP 296
ESKYLSGVGVSRQRKAIVDGLRDSVQ F++ IDGTSPKDVMDLLLLTQYFDMLRDVGQSSR++TVFLPHAPQSV A+Q+AMRDGFMQ AG P
Sbjct: 303 ESKYLSGVGVSRQRKAIVDGLRDSVQNFAEAIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRAATVFLPHAPQSVAAIQAAMRDGFMQGQAGSTETPPP 400
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A835YL74_9STRA (Flagellar associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL74_9STRA) HSP 1 Score: 148 bits (373), Expect = 6.430e-42 Identity = 72/93 (77.42%), Postives = 85/93 (91.40%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQV 281
ESKYLSGVGVSRQR+AIV GLRDS+ FS +I+GT+PKDVMDLLLLTQYFDMLRD+GQS++SST+FLPHAP+SV +LQ AMRDGFMQA+A +
Sbjct: 194 ESKYLSGVGVSRQRQAIVAGLRDSIHDFSSSIEGTTPKDVMDLLLLTQYFDMLRDIGQSTKSSTIFLPHAPESVASLQGAMRDGFMQAAAAKA 286
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A7S4IJZ4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IJZ4_9EUKA) HSP 1 Score: 124 bits (312), Expect = 8.030e-33 Identity = 57/87 (65.52%), Postives = 78/87 (89.66%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQ 263
ESKYLSGVG++RQRKAIV+GL++SV TF+D+++GTS KDVMDL+L+TQYFD L+D+G +S+SST+F+PH+P SV ++ +RDGFMQ
Sbjct: 194 ESKYLSGVGIARQRKAIVEGLQESVTTFADSVEGTSAKDVMDLVLVTQYFDTLKDLGSNSKSSTIFIPHSPGSVGSVAEQVRDGFMQ 280
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A816WVN1_BRANA ((rape) hypothetical protein n=2 Tax=Brassica TaxID=3705 RepID=A0A816WVN1_BRANA) HSP 1 Score: 117 bits (294), Expect = 6.250e-32 Identity = 54/92 (58.70%), Postives = 76/92 (82.61%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQ 278
ESKYLSG+G++RQR+AIVDGLR+SV FS+++ GTS KDVMD++L+TQYFD L+D+G SS+S+ VF+PH P +V+ + S +RDG +Q A +
Sbjct: 37 ESKYLSGLGIARQRQAIVDGLRNSVLAFSESVPGTSSKDVMDMVLVTQYFDTLKDIGASSKSNAVFIPHGPGAVKDIASQIRDGLLQGKAAE 128
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: M1D6E3_SOLTU (Hypersensitive-induced reaction protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1D6E3_SOLTU) HSP 1 Score: 117 bits (294), Expect = 1.440e-31 Identity = 57/89 (64.04%), Postives = 73/89 (82.02%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQAS 269
ESKYLSG+G++RQR+AIVDGLRDSV FS + GTS KDVMD++LLTQYFD ++++G SS+SS VFLPH P +V + S +RDG +QAS
Sbjct: 66 ESKYLSGLGIARQRQAIVDGLRDSVLGFSVNVPGTSAKDVMDMVLLTQYFDTMKEIGASSKSSAVFLPHGPGAVRDVASQIRDGLLQAS 154
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A453KP95_AEGTS (Uncharacterized protein n=4 Tax=Triticeae TaxID=147389 RepID=A0A453KP95_AEGTS) HSP 1 Score: 116 bits (291), Expect = 1.590e-31 Identity = 52/89 (58.43%), Postives = 76/89 (85.39%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQAS 269
ESKYL+GVG++RQR+AIVDGLRDSV FS+ + GT+ KD+MD++L+TQYFD ++++G SS+SS+VF+PH P +V+ + S +RDG +QA+
Sbjct: 34 ESKYLAGVGIARQRQAIVDGLRDSVLAFSENVPGTTAKDIMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDVASQIRDGLLQAN 122
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A8B8LNQ9_ABRPR (hypersensitive-induced response protein-like protein 2 isoform X2 n=3 Tax=fabids TaxID=91835 RepID=A0A8B8LNQ9_ABRPR) HSP 1 Score: 119 bits (299), Expect = 1.610e-31 Identity = 54/93 (58.06%), Postives = 78/93 (83.87%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQASAGQV 281
ESKYLSG+G++RQR+AIVDGLRDSV FS+ + GT+ KDVMD++L+TQYFD ++++G SS+SS+VF+PH P +V+ + +RDG +QA+A Q+
Sbjct: 134 ESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTAKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIAVQIRDGLLQANASQI 226
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Match: A0A6M2EVY6_9ROSI (Uncharacterized protein n=1 Tax=Populus davidiana TaxID=266767 RepID=A0A6M2EVY6_9ROSI) HSP 1 Score: 117 bits (292), Expect = 2.670e-31 Identity = 53/89 (59.55%), Postives = 75/89 (84.27%), Query Frame = 3 Query: 3 ESKYLSGVGVSRQRKAIVDGLRDSVQTFSDTIDGTSPKDVMDLLLLTQYFDMLRDVGQSSRSSTVFLPHAPQSVEALQSAMRDGFMQAS 269
ESKYLSG+G++RQR+AIVDGLRDSV FS+ + GTS KDVMD++L+TQYFD ++++G +S+SSTVF+PH P ++ + + +RDG +QAS
Sbjct: 63 ESKYLSGLGIARQRQAIVDGLRDSVLGFSENVPGTSAKDVMDMVLVTQYFDTMKEIGAASKSSTVFIPHGPGAIRDVATQIRDGLLQAS 151 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10073.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10073.147.1 >prot_P-canaliculata_contig10073.147.1 ID=prot_P-canaliculata_contig10073.147.1|Name=mRNA_P-canaliculata_contig10073.147.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=83bp MASAIPCRRSLTRSMVLHRRTSWTFSSLRSTSTCSATWASLRDPRRYSCLback to top mRNA from alignment at P-canaliculata_contig10073:8824..11237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10073.147.1 ID=mRNA_P-canaliculata_contig10073.147.1|Name=mRNA_P-canaliculata_contig10073.147.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2414bp|location=Sequence derived from alignment at P-canaliculata_contig10073:8824..11237+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10073:8824..11237+ >mRNA_P-canaliculata_contig10073.147.1 ID=mRNA_P-canaliculata_contig10073.147.1|Name=mRNA_P-canaliculata_contig10073.147.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at P-canaliculata_contig10073:8824..11237+ (Pelvetia canaliculata dioecious)back to top |