mRNA_P-canaliculata_contig100690.144.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig100690.144.1
Unique Name	mRNA_P-canaliculata_contig100690.144.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: A0A848UJ31_9GAMM (Uncharacterized protein n=2 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UJ31_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 3.340e-26
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1

Query:   34 ISSVTFAQQP--APDCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGCPDA 225
            +S++ + Q P  APDC+CRAP G M+DLGTV C +IVG  ++VRCEMSTNTPYWK+++GV GCPDA
Sbjct:   30 VSALVWGQDPPVAPDCKCRAPDGQMRDLGTVQCVDIVGTRKLVRCEMSTNTPYWKKVDGVEGCPDA 95

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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: A0A1L9NUX6_9RHOB (Uncharacterized protein n=1 Tax=Planktotalea frisia TaxID=696762 RepID=A0A1L9NUX6_9RHOB)

HSP 1 Score: 50.1 bits (118), Expect = 3.530e-6
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 1

Query:   31 SISSVTFAQQPAPDCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 216
            S + VT       +C C   GGL  +LG + C  + G   M +C+MS N+P W+E+    GC
Sbjct:   16 SFADVTSPSGKTVECYCTDKGGLRIELGQMTCLQVDGRMFMAQCQMSLNSPMWREV--APGC 75

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BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: UPI001CD32B46 (hypothetical protein n=1 Tax=Cognatishimia sp. MH4019 TaxID=2854030 RepID=UPI001CD32B46)

HSP 1 Score: 47.0 bits (110), Expect = 5.530e-5
Identity = 19/49 (38.78%), Postives = 28/49 (57.14%), Query Frame = 1

Query:   70 DCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 216
            DC C   GG   +LG + C N+ G     +C+MS N+P W+E++   GC
Sbjct:   27 DCYCTDQGGERIELGEMICLNVGGRMFTAQCQMSLNSPMWREVQN--GC 73

[Close]

BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Match: UPI001FEB0642 (hypothetical protein n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI001FEB0642)

HSP 1 Score: 46.6 bits (109), Expect = 7.990e-5
Identity = 24/76 (31.58%), Postives = 37/76 (48.68%), Query Frame = 1

Query:    4 RRLLLILLISISSVTFAQQPAP-----DCQCRAPGGLMKDLGTVACFNIVGNNRMVRCEMSTNTPYWKELEGVAGC 216
            R++L  LL +   +  A   +P     DC C    G   +LG + C  + G   M +C+MS N+P W+E+    GC
Sbjct:    2 RKVLTFLLCAAPMIAGADVTSPSGRTVDCYCTDKSGARLELGQMTCIQVDGRMFMAQCQMSLNSPMWREIS--KGC 75

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100690.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A848UJ31_9GAMM	3.340e-26	63.64	Uncharacterized protein n=2 Tax=Granulosicoccus sp...	[more]
A0A1L9NUX6_9RHOB	3.530e-6	35.48	Uncharacterized protein n=1 Tax=Planktotalea frisi...	[more]
UPI001CD32B46	5.530e-5	38.78	hypothetical protein n=1 Tax=Cognatishimia sp. MH4...	[more]
UPI001FEB0642	7.990e-5	31.58	hypothetical protein n=1 Tax=Planktotalea arctica ...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100690	contig	P-canaliculata_contig100690:182..409 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	signal peptide
Exons	1
Model size	228
Cds size	228
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815580.7407312-CDS-P-canaliculata_contig100690:181..409	1622815580.7407312-CDS-P-canaliculata_contig100690:181..409	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100690 182..409 -
1693494148.9473968-CDS-P-canaliculata_contig100690:181..409	1693494148.9473968-CDS-P-canaliculata_contig100690:181..409	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100690 182..409 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100690.144.1	prot_P-canaliculata_contig100690.144.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100690 182..409 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig100690:182..409-
coding sequence from alignment at P-canaliculata_contig100690:182..409-

protein sequence of mRNA_P-canaliculata_contig100690.144.1

>prot_P-canaliculata_contig100690.144.1 ID=prot_P-canaliculata_contig100690.144.1|Name=mRNA_P-canaliculata_contig100690.144.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=76bp
VRRLLLILLISISSVTFAQQPAPDCQCRAPGGLMKDLGTVACFNIVGNNR
MVRCEMSTNTPYWKELEGVAGCPDA*

mRNA from alignment at P-canaliculata_contig100690:182..409-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig100690.144.1 ID=mRNA_P-canaliculata_contig100690.144.1|Name=mRNA_P-canaliculata_contig100690.144.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at P-canaliculata_contig100690:182..409- (Pelvetia canaliculata dioecious)
GTCCGTCGCTTGCTTCTAATACTCTTAATATCGATTTCGTCAGTGACCTT
TGCACAACAGCCCGCGCCGGATTGTCAATGCAGGGCACCTGGAGGCCTGA
TGAAGGATCTGGGTACAGTGGCGTGTTTTAATATTGTTGGCAATAACCGC
ATGGTGCGCTGCGAAATGTCAACCAATACACCCTATTGGAAGGAACTGGA
AGGGGTAGCAGGGTGTCCTGACGCCTGA

Coding sequence (CDS) from alignment at P-canaliculata_contig100690:182..409-

>mRNA_P-canaliculata_contig100690.144.1 ID=mRNA_P-canaliculata_contig100690.144.1|Name=mRNA_P-canaliculata_contig100690.144.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at P-canaliculata_contig100690:182..409- (Pelvetia canaliculata dioecious)
GTCCGTCGCTTGCTTCTAATACTCTTAATATCGATTTCGTCAGTGACCTT
TGCACAACAGCCCGCGCCGGATTGTCAATGCAGGGCACCTGGAGGCCTGA
TGAAGGATCTGGGTACAGTGGCGTGTTTTAATATTGTTGGCAATAACCGC
ATGGTGCGCTGCGAAATGTCAACCAATACACCCTATTGGAAGGAACTGGA
AGGGGTAGCAGGGTGTCCTGACGCCTGAGTCCGTCGCTTGCTTCTAATAC
TCTTAATATCGATTTCGTCAGTGACCTTTGCACAACAGCCCGCGCCGGAT
TGTCAATGCAGGGCACCTGGAGGCCTGATGAAGGATCTGGGTACAGTGGC
GTGTTTTAATATTGTTGGCAATAACCGCATGGTGCGCTGCGAAATGTCAA
CCAATACACCCTATTGGAAGGAACTGGAAGGGGTAGCAGGGTGTCCTGAC
GCCTGA