mRNA_P-canaliculata_contig100651.142.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100651.142.1
Unique NamemRNA_P-canaliculata_contig100651.142.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: UPI00167BA7B4 (CreA family protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI00167BA7B4)

HSP 1 Score: 277 bits (709), Expect = 1.180e-93
Identity = 137/164 (83.54%), Postives = 145/164 (88.41%), Query Frame = 1
Query:    7 RHLS-WMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            RHLS  +LTA +LS    ACG NNTQEVAEINNDWTGNEIKIDAFTDEKV GVTCHMAHFDRGVYDRL+KGSWFENPSNGSINCVQTGPI VG+IDM   GEEVFRQRQSPVFKKLTVRRVYD  N+TLIYLVYSR+VV+GSAKMSIASVPLYG D+TW  G P
Sbjct:    2 RHLSITILTALLLS----ACGANNTQEVAEINNDWTGNEIKIDAFTDEKVKGVTCHMAHFDRGVYDRLKKGSWFENPSNGSINCVQTGPITVGNIDMGKGGEEVFRQRQSPVFKKLTVRRVYDIENNTLIYLVYSRRVVEGSAKMSIASVPLYGADITWADGAP 161          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A8J3G3I3_9PROT (Uncharacterized protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G3I3_9PROT)

HSP 1 Score: 271 bits (693), Expect = 3.350e-91
Identity = 123/146 (84.25%), Postives = 136/146 (93.15%), Query Frame = 1
Query:   58 ACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            ACG NNTQ +AEINNDWTGNEIKIDAFTDEKV+GVTCHMAHFDRGVYDRL++GSWFENPSNGSINCVQTGP+IVGDID+   GE VF+QRQSP+FKKLTVRR+YDR N+TL+YLVYSRQVV+GSAKMSIASVPLYG DVTW  G+P
Sbjct:   16 ACGANNTQGIAEINNDWTGNEIKIDAFTDEKVAGVTCHMAHFDRGVYDRLKQGSWFENPSNGSINCVQTGPVIVGDIDLGKGGETVFKQRQSPIFKKLTVRRIYDRENNTLVYLVYSRQVVEGSAKMSIASVPLYGPDVTWINGKP 161          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A520XTB7_9ACTN (CREA protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520XTB7_9ACTN)

HSP 1 Score: 232 bits (592), Expect = 7.380e-76
Identity = 104/153 (67.97%), Postives = 127/153 (83.01%), Query Frame = 1
Query:   22 MLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTW 480
            + T    +  ++ CG NN +EVAEINNDWTGNE+KI+AF D KV G+TCHMAHFDRGV DRL KG WFENPSNGSI+C+QTGP+ +G I +D +GEEVF+QRQS +FKKL VRR+YD+ ND+LIYLVYSR++VDGSAKMSI+S+PLY  DV W
Sbjct:    4 LFTTICCTGLLIGCGGNN-REVAEINNDWTGNEVKIEAFRDNKVKGITCHMAHFDRGVLDRLSKGDWFENPSNGSISCIQTGPLEIGSIALDKNGEEVFKQRQSLIFKKLAVRRIYDKDNDSLIYLVYSRKIVDGSAKMSISSIPLYDQDVVW 155          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: UPI000428F407 (CreA family protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI000428F407)

HSP 1 Score: 222 bits (565), Expect = 9.220e-72
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 1
Query:   52 MMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTW 480
            ++ CG +   EVAEINNDWTGNEIKI++F DE + GVTCHMAHFDRGV DRL KG WFENPSNGSI+C  TGP+ +GDI +   GEEVF+QRQS VFKKL VRRVYD   +TLIYLVYS+++VDGSAKMS+A+VPL+G DVTW
Sbjct:   13 LVGCGGSGVGEVAEINNDWTGNEIKIESFEDEDIKGVTCHMAHFDRGVIDRLSKGDWFENPSNGSISCGITGPVTIGDISLKKGGEEVFKQRQSIVFKKLAVRRVYDAEAETLIYLVYSKKIVDGSAKMSLATVPLHGADVTW 155          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: UPI0010AA149B (CreA family protein n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AA149B)

HSP 1 Score: 211 bits (538), Expect = 1.400e-67
Identity = 96/163 (58.90%), Postives = 130/163 (79.75%), Query Frame = 1
Query:    7 RHLSWMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            R+L    +AFV + A+   G  +T++V EI  DW GN+I IDA  D +VSGVTCH+A+F+RGV DRL+KG+WFE+PSN SI C QTGP+++GDI++D  GEE+F+QR+S V+KKL ++R+YD+ NDTLIYL +SRQV DGSAKMS+++VPL+G DVTW  G+P
Sbjct:    2 RYLKLCASAFV-ALAVAGAGAAHTEQVGEIGVDWLGNDIIIDAVEDPQVSGVTCHVAYFERGVIDRLQKGNWFEDPSNSSIACRQTGPVVIGDIELDEGGEEIFKQRRSIVWKKLVIKRIYDKKNDTLIYLSHSRQVQDGSAKMSLSTVPLFGQDVTWSEGKP 163          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A2E7B7E5_9PROT (CREA protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A2E7B7E5_9PROT)

HSP 1 Score: 210 bits (534), Expect = 6.070e-67
Identity = 92/149 (61.74%), Postives = 120/149 (80.54%), Query Frame = 1
Query:   49 AMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            A+ ACG +  +EV E  NDW+GNEIKI    D KV GV CH+AHFDRG +DR+ KG+WFENPSN SI+C+QTGP+++G ID+D SGEEVF Q QS +FK+L VRR+YD   D+L+Y+ +SR++VDGSAKMS+++VPLYG DVTW +G+P
Sbjct:   15 ALSACG-SGAKEVGEFKNDWSGNEIKITQLVDPKVQGVVCHLAHFDRGFWDRVGKGNWFENPSNSSISCLQTGPVVIGRIDLDKSGEEVFDQNQSLIFKQLAVRRIYDADTDSLMYVSFSRKIVDGSAKMSLSTVPLYGRDVTWTQGKP 162          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: UPI000367D3C4 (CreA family protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000367D3C4)

HSP 1 Score: 209 bits (533), Expect = 8.330e-67
Identity = 103/151 (68.21%), Postives = 119/151 (78.81%), Query Frame = 1
Query:   13 LSWMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYG 465
            LS  LTA   + A+ ACG    +EVAEINNDWTGNEIKI++F D+KV GV CHMAHFDR V DRL KGSWFENPSNGSI+C   GP+ +GDI     GEEVFRQRQS +FKKL VRRVYD  N+ L+YLVYSR++VDGSAKMSIA+V L+G
Sbjct:    4 LSAALTALT-AIALTACGGPGDREVAEINNDWTGNEIKIESFEDDKVKGVVCHMAHFDRSVIDRLSKGSWFENPSNGSIDCGIIGPVTMGDIKRGKGGEEVFRQRQSIIFKKLAVRRVYDEENNALVYLVYSRKIVDGSAKMSIATVSLHG 153          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A059DY69_9PROT (CREA protein n=7 Tax=root TaxID=1 RepID=A0A059DY69_9PROT)

HSP 1 Score: 209 bits (531), Expect = 1.740e-66
Identity = 99/165 (60.00%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    1 LKRHLSWMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            +KR LS  L A  L  A  ACG    +EV E  NDW GNEIKI   TD K+ GV CH++ FDRGV+DRL KG+WFENPSN SI+C+Q+GPI +G ID+D SGEEVF Q QS +FK+L VRR+YD  +D+L+Y+ YSR++VDGSAKMS+++VPL+G DVTW+ G+P
Sbjct:    1 MKRKLSLALLALALPIA--ACG--GDKEVGEFKNDWLGNEIKIKQLTDPKIEGVVCHLSFFDRGVWDRLGKGNWFENPSNSSISCLQSGPIRIGRIDLDKSGEEVFDQNQSLIFKQLAVRRIYDADSDSLMYVSYSRKIVDGSAKMSLSTVPLFGRDVTWQNGKP 161          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A2D7XRH4_9PROT (CREA protein n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D7XRH4_9PROT)

HSP 1 Score: 208 bits (529), Expect = 3.270e-66
Identity = 97/165 (58.79%), Postives = 126/165 (76.36%), Query Frame = 1
Query:    1 LKRHLSWMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            +++   +++ A +LS    ACG     EV E  NDW GNEIKI   TD KV GV CH+A+FDRGV+DR+ KG+WFENPSN SI+C+Q+GPI VG+ID+D SGEEVF Q QS VFK+L VRR+YD   D+L+Y+ ++R+ VDGSAKMS+++VPLYG DVTW RG+P
Sbjct:    1 MQKFFGFLVVALILS----ACG--GKDEVGEFKNDWLGNEIKIRQLTDRKVEGVVCHLAYFDRGVWDRIGKGNWFENPSNSSISCLQSGPITVGNIDLDKSGEEVFDQSQSLVFKQLAVRRIYDENTDSLMYVSFTRKPVDGSAKMSLSTVPLYGADVTWTRGKP 159          
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Match: A0A2D9RG70_9PROT (CREA protein n=1 Tax=Ponticaulis sp. TaxID=2020902 RepID=A0A2D9RG70_9PROT)

HSP 1 Score: 206 bits (524), Expect = 1.950e-65
Identity = 97/161 (60.25%), Postives = 123/161 (76.40%), Query Frame = 1
Query:   13 LSWMLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCHMAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFRQRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDDVTWKRGEP 495
            L+ M TA +L+    ACG     EV E  NDW GNEIKI   TD KV G+ CH+A FDRGV+DR+ KG+WFENPSN SI+C+Q+GPI +G+ID+D SGEEVF Q QS VFK+L VRR+YD   D+L+Y+ ++R+ VDGSAKMS+++VPLYG DVTW RG+P
Sbjct:    7 LTLMFTALMLA----ACG--GKDEVGEFKNDWLGNEIKIRQLTDRKVEGIVCHLAFFDRGVWDRIGKGNWFENPSNSSISCLQSGPITIGNIDLDKSGEEVFDQSQSLVFKQLAVRRIYDAGTDSLMYVSFTRKPVDGSAKMSLSTVPLYGQDVTWTRGKP 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100651.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00167BA7B41.180e-9383.54CreA family protein n=1 Tax=Litorimonas cladophora... [more]
A0A8J3G3I3_9PROT3.350e-9184.25Uncharacterized protein n=1 Tax=Algimonas arctica ... [more]
A0A520XTB7_9ACTN7.380e-7667.97CREA protein n=2 Tax=Bacteria TaxID=2 RepID=A0A520... [more]
UPI000428F4079.220e-7270.63CreA family protein n=1 Tax=Hellea balneolensis Ta... [more]
UPI0010AA149B1.400e-6758.90CreA family protein n=1 Tax=Nitratireductor sp. XY... [more]
A0A2E7B7E5_9PROT6.070e-6761.74CREA protein n=1 Tax=Hyphomonas sp. TaxID=87 RepID... [more]
UPI000367D3C48.330e-6768.21CreA family protein n=1 Tax=Robiginitomaculum anta... [more]
A0A059DY69_9PROT1.740e-6660.00CREA protein n=7 Tax=root TaxID=1 RepID=A0A059DY69... [more]
A0A2D7XRH4_9PROT3.270e-6658.79CREA protein n=1 Tax=Ponticaulis sp. TaxID=2020902... [more]
A0A2D9RG70_9PROT1.950e-6560.25CREA protein n=1 Tax=Ponticaulis sp. TaxID=2020902... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100651contigP-canaliculata_contig100651:466..963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score220.7
Seed ortholog evalue4.9e-55
Seed eggNOG ortholog1121948.AUAC01000002_gene1689
Preferred namecreA
KEGG koko:K05805
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.CreA protein
EggNOG OGs1RDI5@1224,2VG9B@28211,43XVG@69657,COG3045@1,COG3045@2
COG Functional cat.S
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size477
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.6374404-CDS-P-canaliculata_contig100651:465..9421622815580.6374404-CDS-P-canaliculata_contig100651:465..942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100651 466..942 -
1693494148.8994336-CDS-P-canaliculata_contig100651:465..9421693494148.8994336-CDS-P-canaliculata_contig100651:465..942Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100651 466..942 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.6530125-UTR-P-canaliculata_contig100651:942..9631622815580.6530125-UTR-P-canaliculata_contig100651:942..963Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100651 943..963 -
1693494148.9224625-UTR-P-canaliculata_contig100651:942..9631693494148.9224625-UTR-P-canaliculata_contig100651:942..963Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100651 943..963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100651.142.1prot_P-canaliculata_contig100651.142.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100651 466..942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100651.142.1

>prot_P-canaliculata_contig100651.142.1 ID=prot_P-canaliculata_contig100651.142.1|Name=mRNA_P-canaliculata_contig100651.142.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=159bp
MLTAFVLSPAMMACGVNNTQEVAEINNDWTGNEIKIDAFTDEKVSGVTCH
MAHFDRGVYDRLRKGSWFENPSNGSINCVQTGPIIVGDIDMDGSGEEVFR
QRQSPVFKKLTVRRVYDRPNDTLIYLVYSRQVVDGSAKMSIASVPLYGDD
VTWKRGEP*
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mRNA from alignment at P-canaliculata_contig100651:466..963-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100651.142.1 ID=mRNA_P-canaliculata_contig100651.142.1|Name=mRNA_P-canaliculata_contig100651.142.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at P-canaliculata_contig100651:466..963- (Pelvetia canaliculata dioecious)
TTGAAACGCCACTTGTCTTGGATGCTGACAGCTTTCGTCCTCTCACCCGC GATGATGGCGTGCGGCGTGAATAATACGCAGGAGGTTGCCGAGATTAATA ATGATTGGACGGGCAATGAGATTAAGATCGATGCCTTCACCGATGAAAAA GTCTCCGGCGTCACCTGCCATATGGCGCATTTTGACCGCGGTGTTTATGA CCGGTTGAGAAAAGGCTCTTGGTTTGAAAACCCGTCTAATGGGTCGATCA ACTGTGTACAAACCGGACCTATCATCGTCGGCGACATTGATATGGACGGC AGCGGTGAAGAAGTGTTCCGGCAGCGCCAATCACCGGTCTTCAAAAAATT GACCGTCCGCCGTGTCTATGATCGGCCGAATGATACGCTGATTTATCTAG TATATTCGCGCCAAGTCGTTGATGGCTCGGCCAAAATGAGCATCGCAAGC GTTCCGCTCTACGGAGACGACGTGACTTGGAAGCGAGGTGAACCTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100651:466..963-

>mRNA_P-canaliculata_contig100651.142.1 ID=mRNA_P-canaliculata_contig100651.142.1|Name=mRNA_P-canaliculata_contig100651.142.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at P-canaliculata_contig100651:466..963- (Pelvetia canaliculata dioecious)
ATGCTGACAGCTTTCGTCCTCTCACCCGCGATGATGGCGTGCGGCGTGAA
TAATACGCAGGAGGTTGCCGAGATTAATAATGATTGGACGGGCAATGAGA
TTAAGATCGATGCCTTCACCGATGAAAAAGTCTCCGGCGTCACCTGCCAT
ATGGCGCATTTTGACCGCGGTGTTTATGACCGGTTGAGAAAAGGCTCTTG
GTTTGAAAACCCGTCTAATGGGTCGATCAACTGTGTACAAACCGGACCTA
TCATCGTCGGCGACATTGATATGGACGGCAGCGGTGAAGAAGTGTTCCGG
CAGCGCCAATCACCGGTCTTCAAAAAATTGACCGTCCGCCGTGTCTATGA
TCGGCCGAATGATACGCTGATTTATCTAGTATATTCGCGCCAAGTCGTTG
ATGGCTCGGCCAAAATGAGCATCGCAAGCGTTCCGCTCTACGGAGACGAC
GTGACTTGGAAGCGAGGTGAACCTTAGATGCTGACAGCTTTCGTCCTCTC
ACCCGCGATGATGGCGTGCGGCGTGAATAATACGCAGGAGGTTGCCGAGA
TTAATAATGATTGGACGGGCAATGAGATTAAGATCGATGCCTTCACCGAT
GAAAAAGTCTCCGGCGTCACCTGCCATATGGCGCATTTTGACCGCGGTGT
TTATGACCGGTTGAGAAAAGGCTCTTGGTTTGAAAACCCGTCTAATGGGT
CGATCAACTGTGTACAAACCGGACCTATCATCGTCGGCGACATTGATATG
GACGGCAGCGGTGAAGAAGTGTTCCGGCAGCGCCAATCACCGGTCTTCAA
AAAATTGACCGTCCGCCGTGTCTATGATCGGCCGAATGATACGCTGATTT
ATCTAGTATATTCGCGCCAAGTCGTTGATGGCTCGGCCAAAATGAGCATC
GCAAGCGTTCCGCTCTACGGAGACGACGTGACTTGGAAGCGAGGTGAACC
TTAG
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