Homology
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A2H4FLP2_9FLOR (Photosystem I reaction center subunit II n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FLP2_9FLOR)
HSP 1 Score: 268 bits (685), Expect = 8.220e-91
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 1
Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS IEQ+FEMPTGGAAIMR+GDNLLYLAKKEQCLALS QLK KFKI DFKIYRIFP+GEVQYLHPKDGVFPEKANPGRKG+GNINHSIGKNDN VNKKFTGKA YE
Sbjct: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKIEQFFEMPTGGAAIMRQGDNLLYLAKKEQCLALSAQLKNKFKINDFKIYRIFPTGEVQYLHPKDGVFPEKANPGRKGIGNINHSIGKNDNAVNKKFTGKANYE 138
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A7M1VJW9_SARSK (Photosystem I reaction center subunit II n=4 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A7M1VJW9_SARSK)
HSP 1 Score: 256 bits (655), Expect = 3.420e-86
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
I+LKMPSPTFGGSTGGWLR+AEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QLKK FKI DFKIYRIFP+GEVQYLHPKDG+FPEK NPGR+GVGNI+HSIGKN+NPVNKKFTG+ATYE
Sbjct: 5 INLKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLKKNFKINDFKIYRIFPNGEVQYLHPKDGMFPEKVNPGREGVGNISHSIGKNENPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A1C9CBY2_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Asparagopsis taxiformis TaxID=260499 RepID=A0A1C9CBY2_9FLOR)
HSP 1 Score: 256 bits (654), Expect = 4.860e-86
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGG+A+MRE DNLLYLAKKEQCLALSTQLK KFKI+DFKIYRIFP+GEVQYLHPKDGV PEK+NPGR GVGNI HSIG+NDNPVNKKFTGKATYE
Sbjct: 5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQIFEMPTGGSAVMREDDNLLYLAKKEQCLALSTQLKTKFKIKDFKIYRIFPNGEVQYLHPKDGVAPEKSNPGRTGVGNIQHSIGQNDNPVNKKFTGKATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A4D6WS29_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WS29_9FLOR)
HSP 1 Score: 256 bits (653), Expect = 6.910e-86
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 1
Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
+ID+ MPSP FGGSTGGWL A EIEEKYAITWTS IEQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS+QL+ KFKIRDFKIYRIFPSGE QYLHPKDGVFPEK NPGR+G+GNI HSIGKNDNPVNKKFTG+ATYE
Sbjct: 4 LIDVTMPSPIFGGSTGGWLEAGEIEEKYAITWTSKIEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSSQLRTKFKIRDFKIYRIFPSGEAQYLHPKDGVFPEKVNPGREGIGNIQHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A4D6WX20_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Hypnea pannosa TaxID=105607 RepID=A0A4D6WX20_9FLOR)
HSP 1 Score: 254 bits (650), Expect = 1.980e-85
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
I+LKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLAL TQL KKFKI DFKIYRIFPSGEVQYLHPKDGVFPEK N GR+GVGNI HSIGKN NPVNKKF+GKATYE
Sbjct: 5 INLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQCFEMPTGGAAIMREGDNLLYLAKKEQCLALGTQLTKKFKINDFKIYRIFPSGEVQYLHPKDGVFPEKVNSGREGVGNIQHSIGKNKNPVNKKFSGKATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
M5DBT5_CHOCR (Photosystem I reaction center subunit II n=1 Tax=Chondrus crispus TaxID=2769 RepID=M5DBT5_CHOCR)
HSP 1 Score: 253 bits (647), Expect = 5.680e-85
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
I+ KMPSPTFGGSTGGWLR+AEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QL+K FKIRDFKIYRIFP+GEVQYLHPKDGVFPEK NPGR+GVGNI+HSIGKN+NPVN KFTG+ TYE
Sbjct: 5 INFKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLRKSFKIRDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGREGVGNISHSIGKNENPVNTKFTGRGTYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
R9XYS9_9FLOR (Photosystem I reaction center subunit II n=6 Tax=Florideophyceae TaxID=2806 RepID=R9XYS9_9FLOR)
HSP 1 Score: 253 bits (645), Expect = 8.760e-85
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 1
Query: 16 MPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
MPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGGAAIMREG+NLLYLAKKEQCLALSTQL+ KFKI DFKIYRIFP GEVQYLHPKDGVFPEKANPGR+ VGNI HSIGKNDNPVNKKFTGKATYE
Sbjct: 1 MPSPTFGGSTGGWLRAAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGNNLLYLAKKEQCLALSTQLRAKFKITDFKIYRIFPDGEVQYLHPKDGVFPEKANPGRESVGNIQHSIGKNDNPVNKKFTGKATYE 133
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A1C9C7E3_RHOPU (Photosystem I reaction center subunit II n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7E3_RHOPU)
HSP 1 Score: 253 bits (645), Expect = 1.150e-84
Identity = 120/138 (86.96%), Postives = 130/138 (94.20%), Query Frame = 1
Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
+I+L+MPSPTFGGSTGGWLRAAEIEEK+AITWTS E FEMPTGGAAIMREG+NLLYLAKKEQCLALS QLK KFKI+DFKIYR+FP+GEVQYLHPKDGVFPEK NPGR+GVGNI HSIGKNDNPVNKKFTG+ATYE
Sbjct: 4 IINLEMPSPTFGGSTGGWLRAAEIEEKHAITWTSKEETVFEMPTGGAAIMREGNNLLYLAKKEQCLALSAQLKSKFKIKDFKIYRVFPNGEVQYLHPKDGVFPEKVNPGREGVGNIEHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A4D6X164_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Spermothamnion repens TaxID=31383 RepID=A0A4D6X164_9FLOR)
HSP 1 Score: 252 bits (644), Expect = 1.630e-84
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
ID KMPSPTFGGSTGGWLRAAEIEEKYAITW S EQ FEMPTGG+AIM EGDNLLYLAKKEQCLALS+QLK FKI++FKIYRIFP+GEVQYLHPKDGVFPEKAN GR+GVGNINHSIGKNDNPVNKKFTG+ATYE
Sbjct: 5 IDFKMPSPTFGGSTGGWLRAAEIEEKYAITWISKAEQIFEMPTGGSAIMTEGDNLLYLAKKEQCLALSSQLKTAFKIKNFKIYRIFPNGEVQYLHPKDGVFPEKANQGREGVGNINHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match:
A0A342RZJ1_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Mastocarpus papillatus TaxID=31436 RepID=A0A342RZJ1_9FLOR)
HSP 1 Score: 251 bits (640), Expect = 6.630e-84
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 1
Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGG+AIMRE DNLLYLAKKEQCLALSTQLK FKI DFKIYRIFP+GEVQYLHPKDGVFPEK NPGRK +G I HSIGKN+NP++KKFTG+ATYE
Sbjct: 5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKTEQIFEMPTGGSAIMREDDNLLYLAKKEQCLALSTQLKTSFKINDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGRKSIGKIEHSIGKNENPISKKFTGEATYE 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 8.22e-91 / Id = 92.75 Expect = 3.42e-86 / Id = 89.05 Expect = 4.86e-86 / Id = 89.78 Expect = 6.91e-86 / Id = 87.68 Expect = 1.98e-85 / Id = 90.51 Expect = 5.68e-85 / Id = 87.59 Expect = 8.76e-85 / Id = 91.73 Expect = 1.15e-84 / Id = 86.96 Expect = 1.63e-84 / Id = 88.32 Expect = 6.63e-84 / Id = 86.86 Sequence A0A2H4FLP2_9FLOR A0A7M1VJW9_SARSK A0A1C9CBY2_9FLOR A0A4D6WS29_9FLOR A0A4D6WX20_9FLOR M5DBT5_CHOCR R9XYS9_9FLOR A0A1C9C7E3_RHOPU A0A4D6X164_9FLOR A0A342RZJ1_9FLOR Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 226.1 Seed ortholog evalue 1e-56 Seed eggNOG ortholog 55529.AAC35693 Preferred name psaD KEGG ko ko:K02692 KEGG Pathway ko00195,ko01100,map00195,map01100 KEGG Module M00163 GOs GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035 EggNOG free text desc. photosynthesis EggNOG OGs 28I81@1,2QQIC@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko00001,ko00002,ko00194 Hectar predicted targeting category other localisation Exons 1 Model size 417 Cds size 417 Stop 1 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815580.5354903-CDS-P-canaliculata_contig100650:263..680 1622815580.5354903-CDS-P-canaliculata_contig100650:263..680 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100650 264..680 + 1693494148.8526988-CDS-P-canaliculata_contig100650:263..680 1693494148.8526988-CDS-P-canaliculata_contig100650:263..680 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100650 264..680 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100650.140.1
>prot_P-canaliculata_contig100650.140.1 ID=prot_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=139bp
MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIM back to top mRNA from alignment at P-canaliculata_contig100650:264..680+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious)ATGATAGATTTAAAAATGCCATCTCCAACATTTGGAGGAAGCACTGGCGG
ATGGTTAAGAGCAGCTGAAATAGAAGAAAAATATGCTATTACATGGACCA
GTACAATAGAACAGTATTTTGAAATGCCAACTGGTGGAGCCGCTATAATG
CGTGAAGGAGATAACTTATTGTACTTAGCTAAAAAGGAACAATGTTTAGC
ATTAAGTACTCAATTAAAAAAGAAATTTAAAATTCGTGATTTTAAAATAT
ATAGAATTTTTCCAAGCGGAGAGGTGCAATACTTGCATCCTAAAGATGGA
GTATTCCCAGAAAAAGCAAATCCAGGACGTAAAGGAGTAGGAAATATAAA
CCATTCTATAGGGAAAAATGATAATCCAGTAAATAAAAAGTTTACTGGTA
AAGCAACTTATGAATAG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100650:264..680+
>mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious) back to top