mRNA_P-canaliculata_contig100650.140.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A2H4FLP2_9FLOR (Photosystem I reaction center subunit II n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FLP2_9FLOR) HSP 1 Score: 268 bits (685), Expect = 8.220e-91 Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 1 Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS IEQ+FEMPTGGAAIMR+GDNLLYLAKKEQCLALS QLK KFKI DFKIYRIFP+GEVQYLHPKDGVFPEKANPGRKG+GNINHSIGKNDN VNKKFTGKA YE Sbjct: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKIEQFFEMPTGGAAIMRQGDNLLYLAKKEQCLALSAQLKNKFKINDFKIYRIFPTGEVQYLHPKDGVFPEKANPGRKGIGNINHSIGKNDNAVNKKFTGKANYE 138
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A7M1VJW9_SARSK (Photosystem I reaction center subunit II n=4 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A7M1VJW9_SARSK) HSP 1 Score: 256 bits (655), Expect = 3.420e-86 Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 I+LKMPSPTFGGSTGGWLR+AEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QLKK FKI DFKIYRIFP+GEVQYLHPKDG+FPEK NPGR+GVGNI+HSIGKN+NPVNKKFTG+ATYE Sbjct: 5 INLKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLKKNFKINDFKIYRIFPNGEVQYLHPKDGMFPEKVNPGREGVGNISHSIGKNENPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A1C9CBY2_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Asparagopsis taxiformis TaxID=260499 RepID=A0A1C9CBY2_9FLOR) HSP 1 Score: 256 bits (654), Expect = 4.860e-86 Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGG+A+MRE DNLLYLAKKEQCLALSTQLK KFKI+DFKIYRIFP+GEVQYLHPKDGV PEK+NPGR GVGNI HSIG+NDNPVNKKFTGKATYE Sbjct: 5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQIFEMPTGGSAVMREDDNLLYLAKKEQCLALSTQLKTKFKIKDFKIYRIFPNGEVQYLHPKDGVAPEKSNPGRTGVGNIQHSIGQNDNPVNKKFTGKATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6WS29_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WS29_9FLOR) HSP 1 Score: 256 bits (653), Expect = 6.910e-86 Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 1 Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 +ID+ MPSP FGGSTGGWL A EIEEKYAITWTS IEQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS+QL+ KFKIRDFKIYRIFPSGE QYLHPKDGVFPEK NPGR+G+GNI HSIGKNDNPVNKKFTG+ATYE Sbjct: 4 LIDVTMPSPIFGGSTGGWLEAGEIEEKYAITWTSKIEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSSQLRTKFKIRDFKIYRIFPSGEAQYLHPKDGVFPEKVNPGREGIGNIQHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6WX20_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Hypnea pannosa TaxID=105607 RepID=A0A4D6WX20_9FLOR) HSP 1 Score: 254 bits (650), Expect = 1.980e-85 Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 I+LKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLAL TQL KKFKI DFKIYRIFPSGEVQYLHPKDGVFPEK N GR+GVGNI HSIGKN NPVNKKF+GKATYE Sbjct: 5 INLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQCFEMPTGGAAIMREGDNLLYLAKKEQCLALGTQLTKKFKINDFKIYRIFPSGEVQYLHPKDGVFPEKVNSGREGVGNIQHSIGKNKNPVNKKFSGKATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: M5DBT5_CHOCR (Photosystem I reaction center subunit II n=1 Tax=Chondrus crispus TaxID=2769 RepID=M5DBT5_CHOCR) HSP 1 Score: 253 bits (647), Expect = 5.680e-85 Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 I+ KMPSPTFGGSTGGWLR+AEIEEKYAITWTS EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QL+K FKIRDFKIYRIFP+GEVQYLHPKDGVFPEK NPGR+GVGNI+HSIGKN+NPVN KFTG+ TYE Sbjct: 5 INFKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLRKSFKIRDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGREGVGNISHSIGKNENPVNTKFTGRGTYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: R9XYS9_9FLOR (Photosystem I reaction center subunit II n=6 Tax=Florideophyceae TaxID=2806 RepID=R9XYS9_9FLOR) HSP 1 Score: 253 bits (645), Expect = 8.760e-85 Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 1 Query: 16 MPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 MPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGGAAIMREG+NLLYLAKKEQCLALSTQL+ KFKI DFKIYRIFP GEVQYLHPKDGVFPEKANPGR+ VGNI HSIGKNDNPVNKKFTGKATYE Sbjct: 1 MPSPTFGGSTGGWLRAAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGNNLLYLAKKEQCLALSTQLRAKFKITDFKIYRIFPDGEVQYLHPKDGVFPEKANPGRESVGNIQHSIGKNDNPVNKKFTGKATYE 133
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A1C9C7E3_RHOPU (Photosystem I reaction center subunit II n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7E3_RHOPU) HSP 1 Score: 253 bits (645), Expect = 1.150e-84 Identity = 120/138 (86.96%), Postives = 130/138 (94.20%), Query Frame = 1 Query: 1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 +I+L+MPSPTFGGSTGGWLRAAEIEEK+AITWTS E FEMPTGGAAIMREG+NLLYLAKKEQCLALS QLK KFKI+DFKIYR+FP+GEVQYLHPKDGVFPEK NPGR+GVGNI HSIGKNDNPVNKKFTG+ATYE Sbjct: 4 IINLEMPSPTFGGSTGGWLRAAEIEEKHAITWTSKEETVFEMPTGGAAIMREGNNLLYLAKKEQCLALSAQLKSKFKIKDFKIYRVFPNGEVQYLHPKDGVFPEKVNPGREGVGNIEHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6X164_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Spermothamnion repens TaxID=31383 RepID=A0A4D6X164_9FLOR) HSP 1 Score: 252 bits (644), Expect = 1.630e-84 Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 ID KMPSPTFGGSTGGWLRAAEIEEKYAITW S EQ FEMPTGG+AIM EGDNLLYLAKKEQCLALS+QLK FKI++FKIYRIFP+GEVQYLHPKDGVFPEKAN GR+GVGNINHSIGKNDNPVNKKFTG+ATYE Sbjct: 5 IDFKMPSPTFGGSTGGWLRAAEIEEKYAITWISKAEQIFEMPTGGSAIMTEGDNLLYLAKKEQCLALSSQLKTAFKIKNFKIYRIFPNGEVQYLHPKDGVFPEKANQGREGVGNINHSIGKNDNPVNKKFTGQATYE 141
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A342RZJ1_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Mastocarpus papillatus TaxID=31436 RepID=A0A342RZJ1_9FLOR) HSP 1 Score: 251 bits (640), Expect = 6.630e-84 Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 1 Query: 4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS EQ FEMPTGG+AIMRE DNLLYLAKKEQCLALSTQLK FKI DFKIYRIFP+GEVQYLHPKDGVFPEK NPGRK +G I HSIGKN+NP++KKFTG+ATYE Sbjct: 5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKTEQIFEMPTGGSAIMREDDNLLYLAKKEQCLALSTQLKTSFKINDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGRKSIGKIEHSIGKNENPISKKFTGEATYE 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100650.140.1 >prot_P-canaliculata_contig100650.140.1 ID=prot_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=139bp MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMback to top mRNA from alignment at P-canaliculata_contig100650:264..680+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100650:264..680+ >mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious)back to top |