mRNA_P-canaliculata_contig10059.123.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	2272
Cds size	1779
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10059.123.1	prot_P-canaliculata_contig10059.123.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig10059 3691..5469 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815579.3535728-UTR-P-canaliculata_contig10059:3617..3690	1622815579.3535728-UTR-P-canaliculata_contig10059:3617..3690	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 3618..3690 +
1693494148.2512634-UTR-P-canaliculata_contig10059:3617..3690	1693494148.2512634-UTR-P-canaliculata_contig10059:3617..3690	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 3618..3690 +
1622815579.3754616-UTR-P-canaliculata_contig10059:5469..5473	1622815579.3754616-UTR-P-canaliculata_contig10059:5469..5473	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 5470..5473 +
1693494148.2788222-UTR-P-canaliculata_contig10059:5469..5473	1693494148.2788222-UTR-P-canaliculata_contig10059:5469..5473	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 5470..5473 +
1622815579.3856487-UTR-P-canaliculata_contig10059:5771..6187	1622815579.3856487-UTR-P-canaliculata_contig10059:5771..6187	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 5772..6187 +
1693494148.2869852-UTR-P-canaliculata_contig10059:5771..6187	1693494148.2869852-UTR-P-canaliculata_contig10059:5771..6187	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig10059 5772..6187 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815579.3652625-CDS-P-canaliculata_contig10059:3690..5469	1622815579.3652625-CDS-P-canaliculata_contig10059:3690..5469	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10059 3691..5469 +
1693494148.2703354-CDS-P-canaliculata_contig10059:3690..5469	1693494148.2703354-CDS-P-canaliculata_contig10059:3690..5469	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig10059 3691..5469 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig10059:3618..6187+
coding sequence from alignment at P-canaliculata_contig10059:3618..6187+

protein sequence of mRNA_P-canaliculata_contig10059.123.1

>prot_P-canaliculata_contig10059.123.1 ID=prot_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=593bp
MFGVIGTKTTEYCAQHAKDGMVDVKYRRTCRTEGCGKQPSFGVACTKTRE
YCAQHAPEGMVSTNNKICKIEGCGKRPSFGVAGTNTREYCAQHANEGMVD
VCSRRCRTKGCGKVSSFGVAGKKTREYCSQHAKEGMVDVRSRKCSTQGCG
KVSSFGGVGTKTREYCAQHAPDGMVNVFKIYCKIEGCRKRPSFGVAGTTK
RDYCAQHAMDGMINVNMRPCRTEGCRKQPSFGVAGTKTREYCAQHAPDGM
VIINKVMCKIEGCGKMPSFGVAGTKAREYCAQHAKEGMVNVGSSRCKTKG
CGKVSSFGLAGTKMREYCAQHAKNGMVTFENRTCRTEGCNKQPSFGVAGT
KTRAYCAQHAKEGMVRAKTRMCKTEACGKKSSFGVAGATTREYCTQHAKE
GMVEVCSKKCRTQGCGKVPFFGAAVTKMREYCALHAPDGMVNVCSRMFGN
KGGGKRSLGAENSQRHVENVVVKANSDEIVSGVYTRPICGVEGYRRREID
PHHYEEEAIGGANTQVVKRKTDGASPVQPSPPSGCRIGAYKRLRQGDIAS
TASRRGSAVESAAGAGTLPGIDEPKLPAKRYSSVKMEVQLSG*

mRNA from alignment at P-canaliculata_contig10059:3618..6187+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig10059.123.1 ID=mRNA_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2570bp|location=Sequence derived from alignment at P-canaliculata_contig10059:3618..6187+ (Pelvetia canaliculata dioecious)
GAAGCACGCGAACCACGGAATTGTTGACGCTTGCAACAGAAAATGCAGAA
CTGAAGGCTGCAGAAAAAAGCCAATGTTCGGGGTGATCGGCACAAAAACG
ACAGAATATTGCGCACAGCACGCGAAGGATGGAATGGTCGACGTGAAATA
TAGAAGAACCTGCAGAACCGAAGGCTGCGGCAAGCAACCGTCGTTCGGAG
TGGCTTGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGAGGGA
ATGGTCAGCACCAACAACAAAATATGTAAAATCGAGGGCTGTGGAAAAAG
GCCATCGTTTGGAGTGGCCGGTACAAATACGCGGGAGTACTGCGCGCAGC
ACGCGAACGAGGGGATGGTCGACGTCTGCAGCAGAAGGTGCAGAACCAAG
GGCTGCGGAAAGGTGTCATCGTTCGGAGTGGCCGGTAAGAAAACACGAGA
GTACTGCTCACAGCACGCGAAGGAGGGGATGGTCGACGTCCGCAGCAGAA
AGTGCAGCACCCAGGGCTGCGGAAAGGTGTCATCGTTTGGAGGGGTCGGT
ACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGATGGTGAA
CGTCTTCAAAATATATTGCAAAATTGAAGGCTGCAGGAAGAGGCCGTCGT
TCGGAGTGGCCGGGACGACAAAGCGGGACTATTGCGCACAGCACGCGATG
GATGGGATGATCAACGTGAACATGAGACCCTGCAGAACAGAAGGCTGCCG
CAAGCAGCCGTCGTTCGGTGTGGCCGGTACGAAAACGCGGGAGTACTGCG
CACAGCACGCCCCGGACGGGATGGTCATCATCAACAAAGTAATGTGTAAA
ATCGAGGGCTGCGGCAAAATGCCATCGTTCGGAGTGGCCGGTACGAAAGC
GCGGGAGTACTGCGCACAGCACGCGAAGGAGGGAATGGTCAACGTCGGCA
GCAGTAGGTGCAAAACCAAGGGCTGCGGCAAGGTGTCATCGTTCGGATTG
GCTGGTACGAAAATGCGAGAGTACTGCGCACAGCACGCGAAGAATGGGAT
GGTCACCTTCGAGAACAGAACCTGCAGAACCGAAGGCTGCAACAAGCAGC
CGTCGTTCGGAGTGGCCGGTACGAAAACGCGGGCGTACTGTGCACAGCAC
GCGAAGGAGGGGATGGTCCGCGCAAAAACCAGAATGTGTAAAACCGAAGC
CTGTGGCAAGAAGTCATCGTTCGGAGTGGCCGGTGCGACAACTCGGGAGT
ACTGCACACAGCACGCGAAGGAGGGGATGGTCGAAGTCTGCAGCAAAAAA
TGCAGAACCCAGGGCTGCGGCAAGGTGCCATTTTTCGGAGCAGCCGTTAC
GAAAATGCGAGAGTACTGCGCACTGCACGCCCCAGACGGAATGGTCAATG
TTTGCAGCAGAATGTTTGGGAACAAAGGCGGCGGGAAGAGGTCGCTCGGG
GCGGAGAATAGCCAACGGCACGTGGAGAACGTGGTAGTCAAAGCCAACAG
CGATGAAATCGTAAGTGGAGTCTATACCAGGCCAATATGTGGAGTCGAAG
GATACAGGAGGCGAGAGATCGACCCACACCACTACGAGGAGGAAGCCATT
GGTGGCGCAAATACGCAAGTCGTAAAACGTAAAACCGATGGTGCTTCTCC
CGTCCAGCCAAGCCCTCCTTCGGGCTGTAGGATAGGCGCTTACAAACGAT
TACGACAGGGAGACATTGCGTCTACAGCTTCGAGGCGAGGGAGCGCCGTA
GAATCGGCAGCGGGAGCGGGGACTTTGCCGGGTATCGACGAGCCAAAGTT
GCCCGCCAAGCGTTATTCTTCTGTGAAGATGGAGGTGCAGCTCTCCGGGT
AGTCAGGTACATCCCTCTGAGTCGCAAAAGGACACCCCTCTGGAGCGCAA
AACTCAATGCCTGGTATCACTGTTACTACTATTCTGGTCACCAGGGCTCC
TTCGAAGACTGCTACGTTTGGTCAGATGAAGTCGAATTTCATCTCGTTTT
CGTTTCCCGCATTGCGTTTCGTAGCGAGGCGACGAATCCAGCCCCGCCGT
TCCTCTTAGACCCCGACTATCTTGGAGTGCAACTATTACTGTATACGCTA
CTCGCCCTTACCGCCACGACCGTTTTCTGTCGTTCATCCGTCTTTCGAAC
TCAGGTGGTCAGTCAAGAGCATGATATCGATACTGTAGTCGCCGAGACGT
CGTTAGGTCTGGTGAGGGTCCTACCGTGCTTGCATCCGGAATAACTTACG
TTAGCTGCCCCTGTATAATTTCGCGTACAGACAGGAGAGCCTTTCTCTTC
GTATGTTTTGGAAGTGTTCCTTCTCTTGCCAGACGCACGTATACCGTTCC
ATCCTTGAATTGCCGGTACGGTGACACGGGACCTGAGGACGACGCCACGA
AGGGCTGTTGTGGGTAAAGGTCTGAACAGCCGTCATCACGATTCTCATCG
GGTGTCGGAGGGGGTATTTTAGGGGAAGCAAGTAGGGCGGTATCCGTTGG
ACACGTACTTCATGTCGGCCCCGCTGTATTGAGCGTTAGGTAACGCCTCG
GGGGGAAATATTTAACTGGC

Coding sequence (CDS) from alignment at P-canaliculata_contig10059:3618..6187+

>mRNA_P-canaliculata_contig10059.123.1 ID=mRNA_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3558bp|location=Sequence derived from alignment at P-canaliculata_contig10059:3618..6187+ (Pelvetia canaliculata dioecious)
ATGTTCGGGGTGATCGGCACAAAAACGACAGAATATTGCGCACAGCACGC
GAAGGATGGAATGGTCGACGTGAAATATAGAAGAACCTGCAGAACCGAAG
GCTGCGGCAAGCAACCGTCGTTCGGAGTGGCTTGTACGAAAACGCGGGAG
TACTGCGCACAGCACGCCCCGGAGGGAATGGTCAGCACCAACAACAAAAT
ATGTAAAATCGAGGGCTGTGGAAAAAGGCCATCGTTTGGAGTGGCCGGTA
CAAATACGCGGGAGTACTGCGCGCAGCACGCGAACGAGGGGATGGTCGAC
GTCTGCAGCAGAAGGTGCAGAACCAAGGGCTGCGGAAAGGTGTCATCGTT
CGGAGTGGCCGGTAAGAAAACACGAGAGTACTGCTCACAGCACGCGAAGG
AGGGGATGGTCGACGTCCGCAGCAGAAAGTGCAGCACCCAGGGCTGCGGA
AAGGTGTCATCGTTTGGAGGGGTCGGTACGAAAACGCGGGAGTACTGCGC
ACAGCACGCCCCGGACGGGATGGTGAACGTCTTCAAAATATATTGCAAAA
TTGAAGGCTGCAGGAAGAGGCCGTCGTTCGGAGTGGCCGGGACGACAAAG
CGGGACTATTGCGCACAGCACGCGATGGATGGGATGATCAACGTGAACAT
GAGACCCTGCAGAACAGAAGGCTGCCGCAAGCAGCCGTCGTTCGGTGTGG
CCGGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGATG
GTCATCATCAACAAAGTAATGTGTAAAATCGAGGGCTGCGGCAAAATGCC
ATCGTTCGGAGTGGCCGGTACGAAAGCGCGGGAGTACTGCGCACAGCACG
CGAAGGAGGGAATGGTCAACGTCGGCAGCAGTAGGTGCAAAACCAAGGGC
TGCGGCAAGGTGTCATCGTTCGGATTGGCTGGTACGAAAATGCGAGAGTA
CTGCGCACAGCACGCGAAGAATGGGATGGTCACCTTCGAGAACAGAACCT
GCAGAACCGAAGGCTGCAACAAGCAGCCGTCGTTCGGAGTGGCCGGTACG
AAAACGCGGGCGTACTGTGCACAGCACGCGAAGGAGGGGATGGTCCGCGC
AAAAACCAGAATGTGTAAAACCGAAGCCTGTGGCAAGAAGTCATCGTTCG
GAGTGGCCGGTGCGACAACTCGGGAGTACTGCACACAGCACGCGAAGGAG
GGGATGGTCGAAGTCTGCAGCAAAAAATGCAGAACCCAGGGCTGCGGCAA
GGTGCCATTTTTCGGAGCAGCCGTTACGAAAATGCGAGAGTACTGCGCAC
TGCACGCCCCAGACGGAATGGTCAATGTTTGCAGCAGAATGTTTGGGAAC
AAAGGCGGCGGGAAGAGGTCGCTCGGGGCGGAGAATAGCCAACGGCACGT
GGAGAACGTGGTAGTCAAAGCCAACAGCGATGAAATCGTAAGTGGAGTCT
ATACCAGGCCAATATGTGGAGTCGAAGGATACAGGAGGCGAGAGATCGAC
CCACACCACTACGAGGAGGAAGCCATTGGTGGCGCAAATACGCAAGTCGT
AAAACGTAAAACCGATGGTGCTTCTCCCGTCCAGCCAAGCCCTCCTTCGG
GCTGTAGGATAGGCGCTTACAAACGATTACGACAGGGAGACATTGCGTCT
ACAGCTTCGAGGCGAGGGAGCGCCGTAGAATCGGCAGCGGGAGCGGGGAC
TTTGCCGGGTATCGACGAGCCAAAGTTGCCCGCCAAGCGTTATTCTTCTG
TGAAGATGGAGGTGCAGCTCTCCGGGTAGATGTTCGGGGTGATCGGCACA
AAAACGACAGAATATTGCGCACAGCACGCGAAGGATGGAATGGTCGACGT
GAAATATAGAAGAACCTGCAGAACCGAAGGCTGCGGCAAGCAACCGTCGT
TCGGAGTGGCTTGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCG
GAGGGAATGGTCAGCACCAACAACAAAATATGTAAAATCGAGGGCTGTGG
AAAAAGGCCATCGTTTGGAGTGGCCGGTACAAATACGCGGGAGTACTGCG
CGCAGCACGCGAACGAGGGGATGGTCGACGTCTGCAGCAGAAGGTGCAGA
ACCAAGGGCTGCGGAAAGGTGTCATCGTTCGGAGTGGCCGGTAAGAAAAC
ACGAGAGTACTGCTCACAGCACGCGAAGGAGGGGATGGTCGACGTCCGCA
GCAGAAAGTGCAGCACCCAGGGCTGCGGAAAGGTGTCATCGTTTGGAGGG
GTCGGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGAT
GGTGAACGTCTTCAAAATATATTGCAAAATTGAAGGCTGCAGGAAGAGGC
CGTCGTTCGGAGTGGCCGGGACGACAAAGCGGGACTATTGCGCACAGCAC
GCGATGGATGGGATGATCAACGTGAACATGAGACCCTGCAGAACAGAAGG
CTGCCGCAAGCAGCCGTCGTTCGGTGTGGCCGGTACGAAAACGCGGGAGT
ACTGCGCACAGCACGCCCCGGACGGGATGGTCATCATCAACAAAGTAATG
TGTAAAATCGAGGGCTGCGGCAAAATGCCATCGTTCGGAGTGGCCGGTAC
GAAAGCGCGGGAGTACTGCGCACAGCACGCGAAGGAGGGAATGGTCAACG
TCGGCAGCAGTAGGTGCAAAACCAAGGGCTGCGGCAAGGTGTCATCGTTC
GGATTGGCTGGTACGAAAATGCGAGAGTACTGCGCACAGCACGCGAAGAA
TGGGATGGTCACCTTCGAGAACAGAACCTGCAGAACCGAAGGCTGCAACA
AGCAGCCGTCGTTCGGAGTGGCCGGTACGAAAACGCGGGCGTACTGTGCA
CAGCACGCGAAGGAGGGGATGGTCCGCGCAAAAACCAGAATGTGTAAAAC
CGAAGCCTGTGGCAAGAAGTCATCGTTCGGAGTGGCCGGTGCGACAACTC
GGGAGTACTGCACACAGCACGCGAAGGAGGGGATGGTCGAAGTCTGCAGC
AAAAAATGCAGAACCCAGGGCTGCGGCAAGGTGCCATTTTTCGGAGCAGC
CGTTACGAAAATGCGAGAGTACTGCGCACTGCACGCCCCAGACGGAATGG
TCAATGTTTGCAGCAGAATGTTTGGGAACAAAGGCGGCGGGAAGAGGTCG
CTCGGGGCGGAGAATAGCCAACGGCACGTGGAGAACGTGGTAGTCAAAGC
CAACAGCGATGAAATCGTAAGTGGAGTCTATACCAGGCCAATATGTGGAG
TCGAAGGATACAGGAGGCGAGAGATCGACCCACACCACTACGAGGAGGAA
GCCATTGGTGGCGCAAATACGCAAGTCGTAAAACGTAAAACCGATGGTGC
TTCTCCCGTCCAGCCAAGCCCTCCTTCGGGCTGTAGGATAGGCGCTTACA
AACGATTACGACAGGGAGACATTGCGTCTACAGCTTCGAGGCGAGGGAGC
GCCGTAGAATCGGCAGCGGGAGCGGGGACTTTGCCGGGTATCGACGAGCC
AAAGTTGCCCGCCAAGCGTTATTCTTCTGTGAAGATGGAGGTGCAGCTCT
CCGGGTAG

mRNA_P-canaliculata_contig10059.123.1 (mRNA) Pelvetia canaliculata dioecious

ZOOM

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POSITION

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