mRNA_P-canaliculata_contig100556.120.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100556.120.1
Unique NamemRNA_P-canaliculata_contig100556.120.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100556.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100556contigP-canaliculata_contig100556:50..1024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.5
Seed ortholog evalue1e-35
Seed eggNOG ortholog502025.Hoch_4437
KEGG koko:K02035
KEGG TC3.A.1.5
KEGG Pathwayko02024,map02024
KEGG ModuleM00239
EggNOG free text desc.dipeptide transport
EggNOG OGsCOG0747@1,COG0747@2
COG Functional cat.E
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Hectar predicted targeting categoryother localisation
Exons1
Model size975
Cds size975
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.2301767-CDS-P-canaliculata_contig100556:49..10241622815579.2301767-CDS-P-canaliculata_contig100556:49..1024Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100556 50..1024 +
1693494148.2134295-CDS-P-canaliculata_contig100556:49..10241693494148.2134295-CDS-P-canaliculata_contig100556:49..1024Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100556 50..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100556.120.1prot_P-canaliculata_contig100556.120.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100556 50..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100556.120.1

>prot_P-canaliculata_contig100556.120.1 ID=prot_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=325bp
KQLAQVLCLHQFSVVREGAQPGFDNIDGTGAFRVVRSRKKRREIRFRRFE
NHFAGPPYLESMRLRWYTGTDSEARAYQSGRAQFSQAGDVAFAGHRAKYR
TQVAEGPATILKFVGFGKNLADNLEFKRQFVVALGKNSFVNVGSGEQVLA
PAAPFSIPLSSDNASSNYKSLSSTAPETNRKSLDVVFDITRPGDRAVAEK
IVAAVFQLGWNAKIVALPTESFAERIGRQSASLFIGELVLPPSISLQNEL
LRKLTGGTLAASPFELGAEQAQPLLLSRMHFIPLFRRSVRVHYQSNLRGL
RFGPFGNLNLGDLFVFGGAQRNPS*
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mRNA from alignment at P-canaliculata_contig100556:50..1024+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100556.120.1 ID=mRNA_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at P-canaliculata_contig100556:50..1024+ (Pelvetia canaliculata dioecious)
AAGCAGCTCGCGCAAGTACTATGTCTGCATCAGTTCTCAGTGGTGCGAGA
AGGGGCTCAGCCTGGATTTGATAATATCGATGGGACAGGGGCATTTCGGG
TAGTCCGTTCCAGGAAAAAACGTCGCGAAATACGGTTTCGTCGTTTCGAG
AATCATTTTGCAGGGCCACCGTATCTAGAGTCCATGCGACTGCGTTGGTA
CACGGGAACGGATTCCGAAGCTCGGGCGTATCAAAGCGGAAGAGCGCAGT
TCTCTCAGGCTGGAGACGTAGCGTTTGCTGGTCACAGGGCTAAATACAGG
ACGCAGGTGGCGGAGGGGCCTGCTACAATTTTAAAGTTTGTCGGATTTGG
CAAAAACTTGGCGGACAATTTAGAGTTTAAAAGACAATTTGTCGTGGCGC
TGGGGAAAAACTCTTTTGTAAATGTAGGGTCGGGCGAGCAAGTACTCGCC
CCGGCTGCCCCTTTCTCAATACCCTTAAGCTCCGATAACGCTTCGTCAAA
CTATAAAAGCCTCTCAAGTACGGCTCCGGAAACAAATCGAAAATCCCTCG
ACGTCGTATTTGACATCACCCGACCCGGGGATAGAGCTGTAGCAGAAAAA
ATAGTTGCAGCAGTTTTTCAGCTGGGTTGGAATGCAAAAATTGTAGCGCT
CCCCACGGAAAGCTTTGCAGAAAGAATCGGCAGACAAAGTGCATCTCTTT
TCATCGGAGAGTTGGTTTTGCCTCCATCCATTTCACTTCAAAATGAATTG
CTAAGAAAATTAACCGGTGGGACACTTGCAGCCTCGCCTTTTGAGCTGGG
GGCCGAACAGGCTCAACCCCTCTTACTTTCTCGAATGCATTTCATTCCGC
TATTTCGCCGTTCTGTGAGAGTTCATTATCAAAGCAACCTGCGTGGATTG
AGATTTGGACCGTTCGGGAACCTCAATTTGGGTGATCTCTTCGTCTTCGG
CGGGGCCCAGAGGAATCCGTCGTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100556:50..1024+

>mRNA_P-canaliculata_contig100556.120.1 ID=mRNA_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at P-canaliculata_contig100556:50..1024+ (Pelvetia canaliculata dioecious)
AAGCAGCTCGCGCAAGTACTATGTCTGCATCAGTTCTCAGTGGTGCGAGA
AGGGGCTCAGCCTGGATTTGATAATATCGATGGGACAGGGGCATTTCGGG
TAGTCCGTTCCAGGAAAAAACGTCGCGAAATACGGTTTCGTCGTTTCGAG
AATCATTTTGCAGGGCCACCGTATCTAGAGTCCATGCGACTGCGTTGGTA
CACGGGAACGGATTCCGAAGCTCGGGCGTATCAAAGCGGAAGAGCGCAGT
TCTCTCAGGCTGGAGACGTAGCGTTTGCTGGTCACAGGGCTAAATACAGG
ACGCAGGTGGCGGAGGGGCCTGCTACAATTTTAAAGTTTGTCGGATTTGG
CAAAAACTTGGCGGACAATTTAGAGTTTAAAAGACAATTTGTCGTGGCGC
TGGGGAAAAACTCTTTTGTAAATGTAGGGTCGGGCGAGCAAGTACTCGCC
CCGGCTGCCCCTTTCTCAATACCCTTAAGCTCCGATAACGCTTCGTCAAA
CTATAAAAGCCTCTCAAGTACGGCTCCGGAAACAAATCGAAAATCCCTCG
ACGTCGTATTTGACATCACCCGACCCGGGGATAGAGCTGTAGCAGAAAAA
ATAGTTGCAGCAGTTTTTCAGCTGGGTTGGAATGCAAAAATTGTAGCGCT
CCCCACGGAAAGCTTTGCAGAAAGAATCGGCAGACAAAGTGCATCTCTTT
TCATCGGAGAGTTGGTTTTGCCTCCATCCATTTCACTTCAAAATGAATTG
CTAAGAAAATTAACCGGTGGGACACTTGCAGCCTCGCCTTTTGAGCTGGG
GGCCGAACAGGCTCAACCCCTCTTACTTTCTCGAATGCATTTCATTCCGC
TATTTCGCCGTTCTGTGAGAGTTCATTATCAAAGCAACCTGCGTGGATTG
AGATTTGGACCGTTCGGGAACCTCAATTTGGGTGATCTCTTCGTCTTCGG
CGGGGCCCAGAGGAATCCGTCGTGAAAGCAGCTCGCGCAAGTACTATGTC
TGCATCAGTTCTCAGTGGTGCGAGAAGGGGCTCAGCCTGGATTTGATAAT
ATCGATGGGACAGGGGCATTTCGGGTAGTCCGTTCCAGGAAAAAACGTCG
CGAAATACGGTTTCGTCGTTTCGAGAATCATTTTGCAGGGCCACCGTATC
TAGAGTCCATGCGACTGCGTTGGTACACGGGAACGGATTCCGAAGCTCGG
GCGTATCAAAGCGGAAGAGCGCAGTTCTCTCAGGCTGGAGACGTAGCGTT
TGCTGGTCACAGGGCTAAATACAGGACGCAGGTGGCGGAGGGGCCTGCTA
CAATTTTAAAGTTTGTCGGATTTGGCAAAAACTTGGCGGACAATTTAGAG
TTTAAAAGACAATTTGTCGTGGCGCTGGGGAAAAACTCTTTTGTAAATGT
AGGGTCGGGCGAGCAAGTACTCGCCCCGGCTGCCCCTTTCTCAATACCCT
TAAGCTCCGATAACGCTTCGTCAAACTATAAAAGCCTCTCAAGTACGGCT
CCGGAAACAAATCGAAAATCCCTCGACGTCGTATTTGACATCACCCGACC
CGGGGATAGAGCTGTAGCAGAAAAAATAGTTGCAGCAGTTTTTCAGCTGG
GTTGGAATGCAAAAATTGTAGCGCTCCCCACGGAAAGCTTTGCAGAAAGA
ATCGGCAGACAAAGTGCATCTCTTTTCATCGGAGAGTTGGTTTTGCCTCC
ATCCATTTCACTTCAAAATGAATTGCTAAGAAAATTAACCGGTGGGACAC
TTGCAGCCTCGCCTTTTGAGCTGGGGGCCGAACAGGCTCAACCCCTCTTA
CTTTCTCGAATGCATTTCATTCCGCTATTTCGCCGTTCTGTGAGAGTTCA
TTATCAAAGCAACCTGCGTGGATTGAGATTTGGACCGTTCGGGAACCTCA
ATTTGGGTGATCTCTTCGTCTTCGGCGGGGCCCAGAGGAATCCGTCGTGA
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