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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 157.5 |
| Seed ortholog evalue | 1e-35 |
| Seed eggNOG ortholog | 502025.Hoch_4437 |
| KEGG ko | ko:K02035 |
| KEGG TC | 3.A.1.5 |
| KEGG Pathway | ko02024,map02024 |
| KEGG Module | M00239 |
| EggNOG free text desc. | dipeptide transport |
| EggNOG OGs | COG0747@1,COG0747@2 |
| COG Functional cat. | E |
| Best tax level | Bacteria |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko02000 |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 975 |
| Cds size | 975 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815579.2301767-CDS-P-canaliculata_contig100556:49..1024 | 1622815579.2301767-CDS-P-canaliculata_contig100556:49..1024 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100556 50..1024 + |
| 1693494148.2134295-CDS-P-canaliculata_contig100556:49..1024 | 1693494148.2134295-CDS-P-canaliculata_contig100556:49..1024 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100556 50..1024 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100556.120.1 >prot_P-canaliculata_contig100556.120.1 ID=prot_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=325bp
KQLAQVLCLHQFSVVREGAQPGFDNIDGTGAFRVVRSRKKRREIRFRRFE
NHFAGPPYLESMRLRWYTGTDSEARAYQSGRAQFSQAGDVAFAGHRAKYR
TQVAEGPATILKFVGFGKNLADNLEFKRQFVVALGKNSFVNVGSGEQVLA
PAAPFSIPLSSDNASSNYKSLSSTAPETNRKSLDVVFDITRPGDRAVAEK
IVAAVFQLGWNAKIVALPTESFAERIGRQSASLFIGELVLPPSISLQNEL
LRKLTGGTLAASPFELGAEQAQPLLLSRMHFIPLFRRSVRVHYQSNLRGL
RFGPFGNLNLGDLFVFGGAQRNPS* back to topmRNA from alignment at P-canaliculata_contig100556:50..1024+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100556.120.1 ID=mRNA_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=975bp|location=Sequence derived from alignment at P-canaliculata_contig100556:50..1024+ (Pelvetia canaliculata dioecious)
AAGCAGCTCGCGCAAGTACTATGTCTGCATCAGTTCTCAGTGGTGCGAGA
AGGGGCTCAGCCTGGATTTGATAATATCGATGGGACAGGGGCATTTCGGG
TAGTCCGTTCCAGGAAAAAACGTCGCGAAATACGGTTTCGTCGTTTCGAG
AATCATTTTGCAGGGCCACCGTATCTAGAGTCCATGCGACTGCGTTGGTA
CACGGGAACGGATTCCGAAGCTCGGGCGTATCAAAGCGGAAGAGCGCAGT
TCTCTCAGGCTGGAGACGTAGCGTTTGCTGGTCACAGGGCTAAATACAGG
ACGCAGGTGGCGGAGGGGCCTGCTACAATTTTAAAGTTTGTCGGATTTGG
CAAAAACTTGGCGGACAATTTAGAGTTTAAAAGACAATTTGTCGTGGCGC
TGGGGAAAAACTCTTTTGTAAATGTAGGGTCGGGCGAGCAAGTACTCGCC
CCGGCTGCCCCTTTCTCAATACCCTTAAGCTCCGATAACGCTTCGTCAAA
CTATAAAAGCCTCTCAAGTACGGCTCCGGAAACAAATCGAAAATCCCTCG
ACGTCGTATTTGACATCACCCGACCCGGGGATAGAGCTGTAGCAGAAAAA
ATAGTTGCAGCAGTTTTTCAGCTGGGTTGGAATGCAAAAATTGTAGCGCT
CCCCACGGAAAGCTTTGCAGAAAGAATCGGCAGACAAAGTGCATCTCTTT
TCATCGGAGAGTTGGTTTTGCCTCCATCCATTTCACTTCAAAATGAATTG
CTAAGAAAATTAACCGGTGGGACACTTGCAGCCTCGCCTTTTGAGCTGGG
GGCCGAACAGGCTCAACCCCTCTTACTTTCTCGAATGCATTTCATTCCGC
TATTTCGCCGTTCTGTGAGAGTTCATTATCAAAGCAACCTGCGTGGATTG
AGATTTGGACCGTTCGGGAACCTCAATTTGGGTGATCTCTTCGTCTTCGG
CGGGGCCCAGAGGAATCCGTCGTGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100556:50..1024+ >mRNA_P-canaliculata_contig100556.120.1 ID=mRNA_P-canaliculata_contig100556.120.1|Name=mRNA_P-canaliculata_contig100556.120.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at P-canaliculata_contig100556:50..1024+ (Pelvetia canaliculata dioecious)
AAGCAGCTCGCGCAAGTACTATGTCTGCATCAGTTCTCAGTGGTGCGAGA
AGGGGCTCAGCCTGGATTTGATAATATCGATGGGACAGGGGCATTTCGGG
TAGTCCGTTCCAGGAAAAAACGTCGCGAAATACGGTTTCGTCGTTTCGAG
AATCATTTTGCAGGGCCACCGTATCTAGAGTCCATGCGACTGCGTTGGTA
CACGGGAACGGATTCCGAAGCTCGGGCGTATCAAAGCGGAAGAGCGCAGT
TCTCTCAGGCTGGAGACGTAGCGTTTGCTGGTCACAGGGCTAAATACAGG
ACGCAGGTGGCGGAGGGGCCTGCTACAATTTTAAAGTTTGTCGGATTTGG
CAAAAACTTGGCGGACAATTTAGAGTTTAAAAGACAATTTGTCGTGGCGC
TGGGGAAAAACTCTTTTGTAAATGTAGGGTCGGGCGAGCAAGTACTCGCC
CCGGCTGCCCCTTTCTCAATACCCTTAAGCTCCGATAACGCTTCGTCAAA
CTATAAAAGCCTCTCAAGTACGGCTCCGGAAACAAATCGAAAATCCCTCG
ACGTCGTATTTGACATCACCCGACCCGGGGATAGAGCTGTAGCAGAAAAA
ATAGTTGCAGCAGTTTTTCAGCTGGGTTGGAATGCAAAAATTGTAGCGCT
CCCCACGGAAAGCTTTGCAGAAAGAATCGGCAGACAAAGTGCATCTCTTT
TCATCGGAGAGTTGGTTTTGCCTCCATCCATTTCACTTCAAAATGAATTG
CTAAGAAAATTAACCGGTGGGACACTTGCAGCCTCGCCTTTTGAGCTGGG
GGCCGAACAGGCTCAACCCCTCTTACTTTCTCGAATGCATTTCATTCCGC
TATTTCGCCGTTCTGTGAGAGTTCATTATCAAAGCAACCTGCGTGGATTG
AGATTTGGACCGTTCGGGAACCTCAATTTGGGTGATCTCTTCGTCTTCGG
CGGGGCCCAGAGGAATCCGTCGTGAAAGCAGCTCGCGCAAGTACTATGTC
TGCATCAGTTCTCAGTGGTGCGAGAAGGGGCTCAGCCTGGATTTGATAAT
ATCGATGGGACAGGGGCATTTCGGGTAGTCCGTTCCAGGAAAAAACGTCG
CGAAATACGGTTTCGTCGTTTCGAGAATCATTTTGCAGGGCCACCGTATC
TAGAGTCCATGCGACTGCGTTGGTACACGGGAACGGATTCCGAAGCTCGG
GCGTATCAAAGCGGAAGAGCGCAGTTCTCTCAGGCTGGAGACGTAGCGTT
TGCTGGTCACAGGGCTAAATACAGGACGCAGGTGGCGGAGGGGCCTGCTA
CAATTTTAAAGTTTGTCGGATTTGGCAAAAACTTGGCGGACAATTTAGAG
TTTAAAAGACAATTTGTCGTGGCGCTGGGGAAAAACTCTTTTGTAAATGT
AGGGTCGGGCGAGCAAGTACTCGCCCCGGCTGCCCCTTTCTCAATACCCT
TAAGCTCCGATAACGCTTCGTCAAACTATAAAAGCCTCTCAAGTACGGCT
CCGGAAACAAATCGAAAATCCCTCGACGTCGTATTTGACATCACCCGACC
CGGGGATAGAGCTGTAGCAGAAAAAATAGTTGCAGCAGTTTTTCAGCTGG
GTTGGAATGCAAAAATTGTAGCGCTCCCCACGGAAAGCTTTGCAGAAAGA
ATCGGCAGACAAAGTGCATCTCTTTTCATCGGAGAGTTGGTTTTGCCTCC
ATCCATTTCACTTCAAAATGAATTGCTAAGAAAATTAACCGGTGGGACAC
TTGCAGCCTCGCCTTTTGAGCTGGGGGCCGAACAGGCTCAACCCCTCTTA
CTTTCTCGAATGCATTTCATTCCGCTATTTCGCCGTTCTGTGAGAGTTCA
TTATCAAAGCAACCTGCGTGGATTGAGATTTGGACCGTTCGGGAACCTCA
ATTTGGGTGATCTCTTCGTCTTCGGCGGGGCCCAGAGGAATCCGTCGTGA back to top
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