mRNA_P-canaliculata_contig10050.112.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 2.300e-135 Identity = 318/651 (48.85%), Postives = 368/651 (56.53%), Query Frame = 3 Query: 3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA-EEDRAAGGEVTASTASDGGTPFSGTTATTFSEFVPESLTDAATEIEVMGTGGPGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVALSVSSSDLRPASVLSSPSASRANETRELLARGEYRDENGTRSLSSSAGPGSRATSSTMILNERSPEASGSGTEVIVNGGE---APHSPLRRAK-------------------------------------------------------------------------------------------------------------------QASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVPNNEGLTPKQGLCEKYCPPRLRGRMLQLLKEATLARAKEKARKERAAEGQLNIEAVYHQLAMLRSKLAATAAAQTEVSPSEAAAAAQTENSLLTLVEANVRVVECQRDALQDLETTAARLERMMRRLHMRLDTMSLEDMRY 1598
RKLL+KGC D+NRGDK+GQTPLHIACHREGLL CL+LLAAH+ANL+ALDANGN+ALH+AAGSGAAAAA+FLLGRGLSV+DRNKDGHTPMDIC LHCP DK+ +MQ+LL G K EEDRAA ++ XXXXXXXXXXXXXXXXXXXXXX + +V+ D +V ++ A + SS+ I RS SG T GG+ AP +P R K + SLQELH AIFQGDTAKVE+VV RGD AL++AD++GQTPLHLACYKGSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV N +GLTP Q LCE+YCPPRL+ RMLQLLKE LA+AK ARK + AE Q+NIEAVYHQLAMLRSKLAATAAA T++ SEAA AQ EN+LLTLVEANVRVVE QR AL+++E T R+ERM RRLHMRLD + D+ +
Sbjct: 33 ARKLLQKGCPDVNRGDKFGQTPLHIACHREGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPMDICMLHCPADKKRTMQLLLEGGVKVGEEDRAAXXXXX--------------------XXXXXXXXXNRYDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATNVPETGPMTKAVAGHDAGAGAVAAADVAVPHTPSTXXXXXXXXXXXXXXXXX---XXXXXXXXSSSSIAEPRSANPSGRAT--TTGGGDDRVAPTTPARTKKSTRGAFLSAVYRGVSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTSLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTP-QRLCEQYCPPRLKERMLQLLKEGALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHALENMEKTVDRMERMFRRLHMRLDLVHPGDVSF 657
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI) HSP 1 Score: 311 bits (797), Expect = 9.330e-95 Identity = 174/239 (72.80%), Postives = 195/239 (81.59%), Query Frame = 3 Query: 882 QASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAILIDNGADVTVPNNEGLTPKQGLCEKYCPPRLRGRMLQLLKEATLARAKEKARKERAAEGQLNIEAVYHQLAMLRSKLAATAAAQTEVSPSEAAAAAQTENSLLTLVEANVRVVECQRDALQDLETTAARLERMMRRLHMRLDTMSLEDMRY 1598
+ASLQELH AIFQGDTAKVE+VV RGD AL++AD++GQTPLHLACYKGSR MTRLLVEGGA+L+AVDVNGNGVVHAAVCDSPAVLAILID+GADVTV N +GLTP Q LCE+YCPPRL+ RMLQLLKEA LA+AK ARK + AE Q+NIEAVYHQLAMLRSKLAATAAA T++ SEAA AQ EN+LLTLVEANVRVVE QR M RRLHMRLD + D+ +
Sbjct: 47 RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTP-QRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSF 284
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: D7FI33_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI33_ECTSI) HSP 1 Score: 140 bits (353), Expect = 2.500e-34 Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 3 Query: 87 REGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA-EEDRA 362
REGLL CL+LLAAH+ANL+ALDANGN+ALH+AAGSGAAAAA+FLLG GLSV+D+NKDGHTPMDIC LHCP DK+ +MQ+LL G K EEDRA
Sbjct: 13 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGCGLSVADKNKDGHTPMDICTLHCPADKKRTMQLLLEGGVKVGEEDRA 105
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A0B6Z005_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z005_9EUPU) HSP 1 Score: 66.6 bits (161), Expect = 2.910e-9 Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 3 Query: 891 LQELHFAIFQ----GDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAV-CDSPAVLAILIDNGADVTVPNNEGLTP 1199
LQ+ IF+ G+ +V +++ + D L+ + GQ PLH+A KG + ++VE A LDAVD GN V+H A+ +SP ++ +L+ +GA+V+V NN + P
Sbjct: 22 LQDSPLRIFKCAQNGNAKEVARII-KSDPTRLHARNPQGQMPLHVAASKGHLVVVEVIVEAKADLDAVDNQGNTVLHLAIIAESPDIVTLLMKSGANVSVRNNAHMMP 128
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A812WRB4_9DINO (AKR2B protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A812WRB4_9DINO) HSP 1 Score: 62.4 bits (150), Expect = 9.340e-7 Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDICNLHCPEDKRTSMQMLLARGAKA 347
V++ L+K ++ D G T L A ++ +KLL +AN A+D+NGNS LH AAG G E+LL G++V+ RN G TP+ + L+ E S+Q+L+A GA+A
Sbjct: 159 VQEFLQKK-KPLDSQDHKGITALGYAIG-SNRIAVVKLLLDSRANPFAVDSNGNSGLHYAAGYGRKELLEYLLKVGINVNQRNAQGQTPLAVAQLNKQE---ASLQLLVAHGAQA 268
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: C1MM05_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MM05_MICPC) HSP 1 Score: 60.5 bits (145), Expect = 7.710e-6 Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 3 Query: 951 ERGDLAALNQADKYGQTPLHLACYKGSRAMTRLLVEGGASLDAVDVNGNGVVHAAVCDSPAVLAI---LIDNGADVTVPNNEGLTPKQGLCE 1217
ERGD A + D++G TPL +AC + +T+L V+ G LDAV+ GN +H C S + L+ GA+ V N GLTP++ L E
Sbjct: 186 ERGDFDA-SARDRFGNTPLIVACQNNRKRITKLCVKAGIPLDAVNAQGNSALH--YCYSYGYFELGEYLVTKGANPEVTNAAGLTPRETLSE 274
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A1S3IJM5_LINUN (protein fem-1 homolog A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJM5_LINUN) HSP 1 Score: 58.9 bits (141), Expect = 3.540e-5 Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 3 Query: 867 LRRAKQASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTR-------------LLVEGGASLDAVDVNGNGVVHAAVCDSPA---VLAILIDNGADVTVPNNEGLTPKQ 1205
+ R K+ E F+ F+ K+ Q+ RG + GQTPLHLAC K + + R LL+E GASL+ VDV GN +H A + P V+ +L+++GA + + N G TP Q
Sbjct: 287 MSRMKKKLSPEQEFS-FKKSIYKLVQLKPRG---------QKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQ 405
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A0M8ZYZ1_9HYME (Transient receptor potential channel pyrexia (Fragment) n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M8ZYZ1_9HYME) HSP 1 Score: 59.3 bits (142), Expect = 4.520e-5 Identity = 38/92 (41.30%), Postives = 51/92 (55.43%), Query Frame = 3 Query: 3 VRKLLEKGCSDINRGDKYGQTPLHIACHREGLLSCLKLLAAHQANLEALDANGNSALHTAAGSGAAAAAEFLLGRGLSVSDRNKDGHTPMDI 278
V +LL ++IN+ DKYG TPLHIA E L C+ +L H A+L A LH A +GA + LL RG SV ++N G TP+ +
Sbjct: 551 VTELLITWKANINKTDKYGYTPLHIAALNE-LSQCVDVLIQHGADLSAR----TKVLHCAIRAGAVEIVKLLLERGASVVEKNHMGETPLHV 637
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A1S3IJB5_LINUN (protein fem-1 homolog C-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJB5_LINUN) HSP 1 Score: 58.9 bits (141), Expect = 4.590e-5 Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 3 Query: 867 LRRAKQASLQELHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACYKGSRAMTR-------------LLVEGGASLDAVDVNGNGVVHAAVCDSPA---VLAILIDNGADVTVPNNEGLTPKQ 1205
+ R K+ E F+ F+ K+ Q+ RG + GQTPLHLAC K + + R LL+E GASL+ VDV GN +H A + P V+ +L+++GA + + N G TP Q
Sbjct: 463 MSRMKKKLSPEQEFS-FKKSIYKLVQLKPRG---------QKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQ 581
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Match: A0A8J4PLR6_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PLR6_9MYCE) HSP 1 Score: 56.2 bits (134), Expect = 6.940e-5 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 3 Query: 900 LHFAIFQGDTAKVEQVVERGDLAALNQADKYGQTPLHLACY--KGSRAMTRLLVEGGASLDAVDVNGNGVVH-AAVCDSPAVLAILIDNGADVTVPNNEGLTPKQ 1205
LH+A +G T V+ ++ G A N+ D+ G P+H A G+ A L++ A++++ + NG+ H AA + V+ +L+ NGAD+T+ NNE TP Q
Sbjct: 116 LHYASSKGRTDIVDLLLNYG---AKNRKDETGAAPIHRAAAAPNGAAATVERLLKSDANINSTNSNGDTAAHIAAEYGNEDVMDVLLKNGADMTIENNEHKTPLQ 217 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10050.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10050.112.1 >prot_P-canaliculata_contig10050.112.1 ID=prot_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=445bp MDICNLHCPEDKRTSMQMLLARGAKAEEDRAAGGEVTASTASDGGTPFSGback to top mRNA from alignment at P-canaliculata_contig10050:1437..7306+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10050.112.1 ID=mRNA_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5870bp|location=Sequence derived from alignment at P-canaliculata_contig10050:1437..7306+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10050:1437..7306+ >mRNA_P-canaliculata_contig10050.112.1 ID=mRNA_P-canaliculata_contig10050.112.1|Name=mRNA_P-canaliculata_contig10050.112.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2670bp|location=Sequence derived from alignment at P-canaliculata_contig10050:1437..7306+ (Pelvetia canaliculata dioecious)back to top |