mRNA_P-canaliculata_contig10042.105.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 192 bits (489), Expect = 1.430e-50 Identity = 125/321 (38.94%), Postives = 173/321 (53.89%), Query Frame = 1 Query: 1195 DLYGTCPEGSIGDNDIPPCYVCPNGKTSREGSSTCFSTALRYVRASDELLEAMEGDATGGFAGPGNAEIDGAEHIWKRITLDEEDHGVLEVTGTFEREVNGDASLPSSTALFVYLEPFDGP--FFRGVGTIDSSTGVFTARVTGVPDGFSKIFYSFVVLNPEDAVEIDSDSAESVFDADVISFSCPSPLTITLEWNTDASDFDMEITEPDGSI-WFAWDVGTYGFGSGDVANGFGPETWTVF----PGNSQSVGTYT--VRLYTLNAPEDTEWTLTARVKGEVAWIETGVYEPPAPGFSYSYYMDSSRQSDLFSVTLGSVD 2130
++ G C S PPC CP+G+ S G++ C L + + + AM DA GGFAGPG+ A I L EED G + ++GTF R+ A+LPSST++F+Y E P F RG +D STG F+ VT +P G S++ SFVV++P +A +D+ A++ F DV + +C LTITLEW + SD D+ + EP G + +F+ G GF D GFGPE + + P SQ +G Y V+LY+ +A +T W LTARV GEV WIE G + SS QSD F+V+L D
Sbjct: 135 EVAGLCASNSFSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAG----TIQLTEEDGGSVSLSGTFVRDDG--AALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEA--LDTAGADTAFALDVSNSACVPSLTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFI-------------SSTQSDTFAVSLSVYD 433
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 186 bits (472), Expect = 3.930e-47 Identity = 122/305 (40.00%), Postives = 168/305 (55.08%), Query Frame = 1 Query: 1243 PPCYVCPNGKTSREGSSTCFSTALRYVRASDELLEAMEGDATGGFAGPGNAEIDGAEHIWKRITLDEEDHGVLEVTGTFEREVNGDASLPSSTALFVYLEPFDGP--FFRGVGTIDSSTGVFTARVTGVPDGFSKIFYSFVVLNPEDAVEIDSDSAESVFDADVISFSCPSPLTITLEWNTDASDFDMEITEPDGSI-WFAWDVGTYGFGSGDVANGFGPETWTVF----PGNSQSVGTYT--VRLYTLNAPEDTEWTLTARVKGEVAWIETGVYEPPAPGFSYSYYMDSSRQSDLFSVTLGSVD 2130
PPC CP+G+ S G++ C L + + + AM DA GGFAGPG+ A I L EED G + ++GTF R+ A+LPSST++F+Y E P F RG +D STG F+ VT +P G S++ SFVV++P +A +D+ A++ F DV + +C LTITLEW + SD D+ + EP G + +F+ G GF D GFGPE + + P SQ +G Y V+LY+ +A +T W LTARV GEV WIE G + SS QSD F+V+L D
Sbjct: 277 PPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAG----TIQLTEEDGGSVSLSGTFVRDDG--AALPSSTSVFIYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEA--LDTAGADTAFALDVSNSACVPSLTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATET-WRLTARVSGEVVWIEEGDFI-------------SSTQSDTFAVSLSVYD 559
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: A0A6H5JLL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL4_9PHAE) HSP 1 Score: 128 bits (322), Expect = 8.140e-27 Identity = 110/356 (30.90%), Postives = 159/356 (44.66%), Query Frame = 1 Query: 1171 YSEGTCAIDLYGTCPEGSIGDNDIPPCYVCPNGKTSREGSSTCFSTALRYVRA-SDELLEAMEGDATGGFAGPGNAEIDGAE-----------HIWKRITLDEEDHGVLEVTGTFEREVNGDASLPSSTALFVYLEPFDGP--FFRGVGTIDSSTGVFTARVTGVPDGFSKIFYSFVVLNPEDAVEIDSD--SAESVFDADVISFSCPSPLTITLEWNTDASDFDMEITEPDGSIWFAWDVGTYGFGSGDVANGFG--PETWT----------VFPG----NSQSVGTYTVRLYTLNAPEDTE--WTLTARVKGEVAWIETGVYEPPAPGFSYSYYMDSSRQSDLFSVTLGSVDAD 2136
Y EG L G C + PPC CP G+ S G+ C + V S+ ++ AM DATGGFAGPG+ IDG W I L + + G + V+G F R + A LP S+A+F Y+E D P RG I ++G F+ V VP G S++F SFV+ +P +A+ + ++ A S+F + + +C LTIT EW + EITEPD + T G G+ + G G + W ++ G SQ +G Y R + P +T W +TARV GE+ ++ Y + QSD+ T+ D D
Sbjct: 754 YQEG-----LGGLCTTNTFSSTGTPPCTDCPAGEVSGRGAKVCVPQGVPAVALPSEAIVAAMLADATGGFAGPGSL-IDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVR--HDSAPLPFSSAVFFYIENADQPDDIARGSSKIRGTSGDFSMVVMDVPPGNSRLFLSFVIKDPAEALNVAAEVVPATSIFSLQISNMACVPSLTITHEW-IGGNFAPYEITEPD--------LTTIHSGHGNYSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRKFLPILPSETPPTWRITARVSGEIVYM----------------YKEEQVQSDIVEFTVLLTDYD 1076
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: D8LKE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE7_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.800e-19 Identity = 92/291 (31.62%), Postives = 132/291 (45.36%), Query Frame = 1 Query: 1363 ATGGFAGPGNAEIDGAE-----------HIWKRITLDEEDHGVLEVTGTFEREVNGDASLPSSTALFVYLEPFDGP--FFRGVGTIDSSTGVFTARVTGVPDGFSKIFYSFVVLNPEDAVEIDSD--SAESVFDADVISFSCPSPLTITLEWNTDASDFDMEITEPDGSIWFAWDVGTYGFGSGDVANGFG--PETWT----------VFPG----NSQSVGTYTVRLYTLNAPEDTE--WTLTARVKGEVAWIETGVYEPPAPGFSYSYYMDSSRQSDLFSVTLGSVDAD 2136
ATGGFAGPG+ IDG W I L + + G + V+G F R + A+LP S+A+F Y+E D P F RG I ++G + VT VP G S++F SFV+ +P +A+ + ++ A S+F D+ + C LTIT EW + EITEPD + T GDV+ G G + W ++ G SQ +G Y R++ +T W TARV GE+ ++ Y + QSD T+ D D
Sbjct: 10 ATGGFAGPGSL-IDGGVMGGFGVTEVDIQPWGEIELTDANLGSVYVSGKFVR--HDSAALPFSSAVFFYIENADQPDDFARGSFKIRGASGDLSMLVTDVPPGNSRLFLSFVIEDPAEALNVAAEVVPATSIFSLDISNMGCVPSLTITHEW-IGGNFAPYEITEPD--------LNTINSDHGDVSGGVGVFQDNWAGSSPAAKRYILYSGLDVDTSQVLGEYKGRMFLPFVTSETPPTWRSTARVSGEIVYM----------------YKEEQVQSDTVEFTVLLTDYD 272
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 8.990e-17 Identity = 64/182 (35.16%), Postives = 98/182 (53.85%), Query Frame = 1 Query: 16 VTNMTASTNGWDERSS-GYGCVPSSCHAGLAIDGLTDGQSRWSCKSSV-LSVDACKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELTAIQASSVMVQAVEPLPDNGWLSIIEIKLMVESDVVVEEIPAFATNDDTYIGCFADTPKNRIMSIVTTMDDL 555
V ++T + +D RS+ YGC P C A DG +SRWSC+ S+ S C +T TL++ + L ++RI L+KG R R+++++ DG +TT SSG T GFE+ L +V+ V L D+ WLSI+E+++ V+ +V +DDT + D + M VT DL
Sbjct: 30 VMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLL---MDQGQVVELVGDLNDDEWLSILEVEIDVDDGIV---------DDDTVV--VLDVVEAAEMGTVTATADL 197
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.720e-15 Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1 Query: 70 GCVPSSCHAGLAIDGLTDGQSRWSCKSSVLSVDACKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELTAIQASSVMVQAVEPLPDNGWLSIIEIKLMVESDVVV 450
GC P+ C A L DG SRWSC S+ C ++ L DL E+R+ L+KG R+R++++ DG+L TT SSG T GFE +L+ V V V L D+ W+SI E +MV SD VV
Sbjct: 210 GCDPAGCTAELTRDGDVSDGSRWSCAPSLGGT--CSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGV--LDDSEWVSITETDIMVLSDSVV 332
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.720e-15 Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 70 GCVPSSCHAGLAIDGLTDGQSRWSCKSSVLSVDACKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELTAIQASSVMVQAVEPLPDNGWLSIIEIKLMVESDVVVEEIPA 465
GC P+ C L DG SRW+C S+ V C ++ L L E+R+ L+ G R+R++N+F DGALVTT SSG T GFE+ L AS +V+ L D+ WLSIIE ++MV VV PA
Sbjct: 389 GCDPAGCTGALTRDGDMTDTSRWACAPSLGGV--CFISYDLGREFGLDEVRVALYNGDIRVRTINVFVDGALVTTWTSSGTTNGFESIALPDT-ASGTVVELQGVLDDSEWLSIIETEIMVWPQNVVTPPPA 517
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.940e-15 Identity = 61/195 (31.28%), Postives = 98/195 (50.26%), Query Frame = 1 Query: 16 VTNMTASTNGWDERSS-GYGCVPSSCHAGLAIDGLTDGQSRWSCKSSVLSVDA-CKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELTAIQASSVMVQAVEPLPDNGWLSIIEIKLMVESDVVVEEIPAFATNDDTYIGCFADTPKNRIMSIVTTMDDLTPEACLKYCTEMG 594
+T +T +D+R++ YGC P+ C DG+T +SRWSC S+ S D+ C +T TL++ Q L ++I L++G R R+++I DG + SSG T FE+ +L +V+ V L D WLSI+E++++V+ E+ + + AD +R+ V PE C T G
Sbjct: 31 LTGVTTEAPVFDDRATLPYGCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGV---DGKVVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTV----GCDPEGCTAALTRDG 218
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 2.430e-14 Identity = 65/189 (34.39%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 70 GCVPSSCHAGLAIDGLTDGQSRWSCKSSVLSVDA-CKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELT-AIQASSVMVQAVEPLPDNGWLSIIEIKLMVESDVVVEEIPAFATNDDTYIGCFADTPKNRIMSIVTTMDDLTPEACLKYCTEMGSRFRFYALQQGN 630
GC P+ C A L DG T SRWSC +++ A C ++ L L E+R+ L+ G R+R++++ DG LV T SSG T GFE+ + + + +Q V L D+ WLSIIE ++MV VV P AT A T I T + DL P + T GS A + G+
Sbjct: 267 GCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGV--LDDSEWLSIIETEIMVWPQNVVTPPPTPATTAXXXXXQPATTSP-----IPTPVGDLQPVGLIPLATGDGSLLDRCAAKDGD 448
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 2.600e-12 Identity = 53/141 (37.59%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 22 NMTASTNGWDER-SSGYGCVPSSCHAGLAIDG-LTDGQSRWSCKSSVLSVDA-CKLTLTLDEPQDLVEMRIFLWKGKQRIRSMNIFADGALVTTVASSGKTKGFEAYELTAIQASSVMVQAVEPLPDNGWLSIIEIKLMVE 435
N+TA +D R S+ GC PS C A L DG T +SRW+CK ++ + C++T L L + I ++KG +R R++ I D TT SSG T GFE EL + + V L D+ WLSI+E+K+M++
Sbjct: 15 NVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGR---WISIVGVLADSEWLSIMEVKIMID 152 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10042.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10042.105.1 >prot_P-canaliculata_contig10042.105.1 ID=prot_P-canaliculata_contig10042.105.1|Name=mRNA_P-canaliculata_contig10042.105.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=707bp MTASTNGWDERSSGYGCVPSSCHAGLAIDGLTDGQSRWSCKSSVLSVDACback to top mRNA from alignment at P-canaliculata_contig10042:2301..8767+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10042.105.1 ID=mRNA_P-canaliculata_contig10042.105.1|Name=mRNA_P-canaliculata_contig10042.105.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6467bp|location=Sequence derived from alignment at P-canaliculata_contig10042:2301..8767+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10042:2301..8767+ >mRNA_P-canaliculata_contig10042.105.1 ID=mRNA_P-canaliculata_contig10042.105.1|Name=mRNA_P-canaliculata_contig10042.105.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4242bp|location=Sequence derived from alignment at P-canaliculata_contig10042:2301..8767+ (Pelvetia canaliculata dioecious)back to top |