Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 331 |
| Cds size | 303 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.4348335-UTR-P-canaliculata_contig10040:7975..8002 | 1622815577.4348335-UTR-P-canaliculata_contig10040:7975..8002 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10040 7976..8002 - |
| 1693494147.09472-UTR-P-canaliculata_contig10040:7975..8002 | 1693494147.09472-UTR-P-canaliculata_contig10040:7975..8002 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10040 7976..8002 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.4463084-CDS-P-canaliculata_contig10040:8002..8159 | 1622815577.4463084-CDS-P-canaliculata_contig10040:8002..8159 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10040 8003..8159 - |
| 1693494147.1059828-CDS-P-canaliculata_contig10040:8002..8159 | 1693494147.1059828-CDS-P-canaliculata_contig10040:8002..8159 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10040 8003..8159 - |
| 1622815577.458352-CDS-P-canaliculata_contig10040:8433..8579 | 1622815577.458352-CDS-P-canaliculata_contig10040:8433..8579 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10040 8434..8579 - |
| 1693494147.1173732-CDS-P-canaliculata_contig10040:8433..8579 | 1693494147.1173732-CDS-P-canaliculata_contig10040:8433..8579 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10040 8434..8579 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10040.101.1 >prot_P-canaliculata_contig10040.101.1 ID=prot_P-canaliculata_contig10040.101.1|Name=mRNA_P-canaliculata_contig10040.101.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=101bp
SVVFSNRKAEDARAELDRFQSLLTKLEDQTSDLQARARLLDADLKVINRS
NAFSRTAINLERTERLQLARAEKKALEEAISKTQKMLKEPSAPTTVTSAT
* back to topmRNA from alignment at P-canaliculata_contig10040:7976..8579- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10040.101.1 ID=mRNA_P-canaliculata_contig10040.101.1|Name=mRNA_P-canaliculata_contig10040.101.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=604bp|location=Sequence derived from alignment at P-canaliculata_contig10040:7976..8579- (Pelvetia canaliculata dioecious)
AGCGTCGTCTTCTCAAATAGAAAGGCAGAAGATGCTCGAGCAGAATTGGA
TAGATTTCAAAGTTTACTCACGAAACTTGAAGATCAAACAAGTGATCTAC
AGGCGCGAGCGAGGTTGCTTGACGCAGATCTCAAAGTCATCAATAGGTGA
AAGCCGAAGTTATACAGCATCATAGATCTGTTCAGCGATGGAATTGCACA
TCATGTGGTCGACCGTACTGTTACAATTCGCTATTGTTCGAAAGAAAACC
CGATTGCAGGTTAAGCATCGCCTTGCGAAGTGTGTCTTATACTGTTGGGG
AGAAGATTTAGCAAGAATGTTGAATACCGTCCACTCTAGTATGCTATGAT
GTAGTTTCCCGCCTGCGGTAAATTTCGAGAATGGCTCTTCATTTTATGTT
TGCTCTATTTTCTTCACCAGGAGCAATGCGTTTTCTCGGACTGCTATAAA
CCTTGAGCGCACTGAACGCCTCCAACTTGCAAGAGCAGAGAAGAAGGCGT
TAGAGGAAGCTATCTCCAAGACGCAGAAAATGCTTAAGGAACCAAGCGCC
CCCACCACCGTCACCTCCGCGACGTAAAAAAATACTAACAGAGCTAGATT
GTAC back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10040:7976..8579- >mRNA_P-canaliculata_contig10040.101.1 ID=mRNA_P-canaliculata_contig10040.101.1|Name=mRNA_P-canaliculata_contig10040.101.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at P-canaliculata_contig10040:7976..8579- (Pelvetia canaliculata dioecious)
AGCGTCGTCTTCTCAAATAGAAAGGCAGAAGATGCTCGAGCAGAATTGGA
TAGATTTCAAAGTTTACTCACGAAACTTGAAGATCAAACAAGTGATCTAC
AGGCGCGAGCGAGGTTGCTTGACGCAGATCTCAAAGTCATCAATAGAGCG
TCGTCTTCTCAAATAGAAAGGCAGAAGATGCTCGAGCAGAATTGGATAGA
TTTCAAAGTTTACTCACGAAACTTGAAGATCAAACAAGTGATCTACAGGC
GCGAGCGAGGTTGCTTGACGCAGATCTCAAAGTCATCAATAGGAGCAATG
CGTTTTCTCGGACTGCTATAAACCTTGAGCGCACTGAACGCCTCCAACTT
GCAAGAGCAGAGAAGAAGGCGTTAGAGGAAGCTATCTCCAAGACGCAGAA
AATGCTTAAGGAACCAAGCGCCCCCACCACCGTCACCTCCGCGACGTAAG
AGCAATGCGTTTTCTCGGACTGCTATAAACCTTGAGCGCACTGAACGCCT
CCAACTTGCAAGAGCAGAGAAGAAGGCGTTAGAGGAAGCTATCTCCAAGA
CGCAGAAAATGCTTAAGGAACCAAGCGCCCCCACCACCGTCACCTCCGCG
ACGTAA back to top
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