mRNA_P-canaliculata_contig100344.93.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.430e-11
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T       CI RTD  GEF+G+F     R  I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:   52 RWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAAL 137

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.740e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD  A     +ADY   +  ++ C     RTD  GEF+G+F     R  I  E TPP+TP+YNGVAERALGLL + A+
Sbjct:   21 RWTRVFFLKHKSDAAAAFEPYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSAL 106

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.890e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD  A     +ADY   +  ++ C     RTD  GEF+G+F     R  I  E TPP+TP+YNGVAERALGLL + A+
Sbjct:  225 RWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSAL 310

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.440e-11
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        + DY T +    +   RTDD GEF+G+F     R  I  E TPP TP+YN VAERALGL+ + A+
Sbjct:  246 RWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAAL 331

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.980e-10
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITP-QKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T      +   RTD  GEF+G+F     R  I  E TPP T +YNGVAERALGL+ + A+
Sbjct:  225 RWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAAL 310

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.940e-10
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLL 502
            RW +  F+K KSD    L   +ADY T      +   RTD  GEF+G+F     R  I  E TPP TP+YNGVAERALG L
Sbjct:  676 RWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.070e-10
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +   +K KSD        +ADY T   P K+ I  +RTD  GEF+G+F        I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:   52 RWTRAFLLKHKSDAAVGFEKFLADYRTKGVPCKVYI--VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAAL 137

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-9
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T     I C     RTD  GEF+G+F     R  I  E TPP TP+YN VAERALGL+ + A+
Sbjct:  222 RWTRGFFLKHKSDAAIGFEKFLADYRTK---GIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAAL 307

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-9
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T      + I R D  GEF+G+F     R  I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:  731 RWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAAL 816

[Close]

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.910e-8
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 2

Query:  269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T   P K+ I   RTD  GEF+G+F     R  I  E TPP TP Y  VAERALGL+ + A+
Sbjct:  512 RWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIA--RTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAAL 597

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A6H5KAM7_9PHAE	3.430e-11	47.67	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KKB4_9PHAE	3.740e-11	46.07	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LL52_9PHAE	3.890e-11	46.07	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KGJ8_9PHAE	6.440e-11	44.19	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZ88_9PHAE	4.980e-10	44.19	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5JM30_9PHAE	5.940e-10	48.15	Integrase catalytic domain-containing protein (Fra...	[more]
A0A6H5K2T3_9PHAE	9.070e-10	45.45	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L1A7_9PHAE	1.350e-9	44.94	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JAQ2_9PHAE	1.500e-9	45.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KPZ8_9PHAE	2.910e-8	45.45	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100344.93.1	prot_P-canaliculata_contig100344.93.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100344 463..750 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815576.8649297-UTR-P-canaliculata_contig100344:450..462	1622815576.8649297-UTR-P-canaliculata_contig100344:450..462	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100344 451..462 +
1693494146.7173104-UTR-P-canaliculata_contig100344:450..462	1693494146.7173104-UTR-P-canaliculata_contig100344:450..462	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100344 451..462 +
1622815576.8888586-UTR-P-canaliculata_contig100344:750..992	1622815576.8888586-UTR-P-canaliculata_contig100344:750..992	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100344 751..992 +
1693494146.7564473-UTR-P-canaliculata_contig100344:750..992	1693494146.7564473-UTR-P-canaliculata_contig100344:750..992	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100344 751..992 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815576.877901-CDS-P-canaliculata_contig100344:462..750	1622815576.877901-CDS-P-canaliculata_contig100344:462..750	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100344 463..750 +
1693494146.7450235-CDS-P-canaliculata_contig100344:462..750	1693494146.7450235-CDS-P-canaliculata_contig100344:462..750	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100344 463..750 +