mRNA_P-canaliculata_contig10033.91.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10033.91.1 vs. uniprot
Match: A0A6H5KHY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY3_9PHAE) HSP 1 Score: 405 bits (1040), Expect = 5.000e-130 Identity = 278/588 (47.28%), Postives = 335/588 (56.97%), Query Frame = 1 Query: 439 YDEVVLTTDWEADDFLSACVIFAVFTAEARRAHADGGGNERPYPLRTVIVGEGNSFEKACRVREALAAMRREGVVPPGCSIEVLEGSPTLPPSCEWKSSRPAARRTQAGRRGGGEDEEHGVRFWEPFFGSFAVVLRGAVIAMLRRGWRRPWNREAGLARKRLRELLVVARRQRKRALVIALKPPRDLIEVFLDRDRVEW------RGQGDEKKQEFDHVDLLVSGAFGGVFVGSGEG---------EKSLFQPRPTGQGVDGLEAVLSTGDVVEVMGKVNRVFVVQLDDLVGSYNFPRAISPDRTPVLAAAVAGARGALPSALRRVVAASNKRALMGFPDKVAAVISAGRYANEDLQSKAETIAAAAAAP----AAARLAELGACMADLIATDFEALDTAGLSPGIHQAMFRSLDVRVSLSNAAAAWALACPDAVCWERFPFVGLDPPSGRVVPLEAKGPGGHK---------RRGELISSCDICEVRRGYNRESRTATVSEVRSS---RSNGKLTACVGNSGFREGGGGVAVV----------GTAGVAASAFFATGFARWFERLEDQEAGYMEFVGFLVRVLDQMP 2079
YD+VVLTT+WEAD L+AC++F+V TAE +RA G +RPYPLR +IVGEG KA + REAL AMRR ++PP C ++VLE +++ R+ G E+E G W F GS +V+L +LR R + R GLAR +LRE+ R+ +R LVIALKPPRDL+EV L+ R W RG G + H+D+ VSG F G F G EG + RP+ G + LS DV E + +VNRV VVQL+DLV Y FP AI+PDRTP LAAAVAGARG LPS LRR +AASN AL FPDKVA+ I AGRYANE+L+ A +IAAAA A R+AELGACMADLIA+DFEAL+ AGLSPG QA+FRSLDV ++LS+ AAAWAL DAVCWE P VGL GR++ L G G + RRG SS E G R +SE R R+ GK G G RE G G F ATGFA FERLEDQEAGY F F+VRVLDQMP
Sbjct: 3 YDQVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTKRPYPLRNLIVGEG----KANQAREALEAMRRTNLIPPDCRVDVLEAGEG--------AAKGEKRQEDRGIEAEEEEEGGGDGVWRSFLGSCSVLL------LLRSTLRWLFGRRRGLARTKLREVFNATRKDNQRVLVIALKPPRDLVEVLLESGRASWWGRAMGRGGGRRGCSRYKHIDMFVSGGFSGAFRGQREGGECSAPGHSPREQRHRRPSAGG----DEELSRDDVEEALARVNRVLVVQLEDLVRPYGFPTAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIEAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGLSPGTQQAVFRSLDVGMALSDVAAAWALVRQDAVCWESCPGVGLGHSGGRLISL---GDGARREETEDSRSGRRGRRNSSSGSVEGPAGRPRGD-DGDISEDRGDSRRRTRGKKGDSRG--GKREXXXXXXXXXKILVHRTGDGMCGSCVGGFLATGFADGFERLEDQEAGYGAFAVFIVRVLDQMP 562
BLAST of mRNA_P-canaliculata_contig10033.91.1 vs. uniprot
Match: D8LJK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK4_ECTSI) HSP 1 Score: 382 bits (982), Expect = 3.500e-120 Identity = 301/758 (39.71%), Postives = 363/758 (47.89%), Query Frame = 1 Query: 1 ILETCLVLSIGILSRFWLPRPLVEARYSLASWRRRV--LASGQDDGDSSDQVPTRTVLIHTRSGSWGVNGIVLSQPPFLPYRFPQGRDVNATAGAED-LPDLAGRYLDLIAQAQAQGRSAASNG-APPLQRGPLARGCCGRPRA-FVDASAYDEVVLTTDWEADDFLSACVIFAVFTAEARRAHADGGGNERPYPLRTVIVGEGNSFEKACRVREALAAMRREGVVPPGCSIEVLEGSPTLPPSCEWKSSRPAARRTQAGRRGGGEDEEHGVRF------------------WEPFFGSFAVVLRGAVIAMLRRGWRRPWNREAGLARKRLRELLVVARRQRKRALVIALKPPRDLIEVFLDRDRVEWRGQGDEKKQEFDHVDLLVSGAFGGVFVGSGEGEKSLFQPRPTGQGVDGLEAVLSTGDVVEVMGKVNRVFVVQLDDLVGSYNFPRAISPDRTPVLAAAVAGARGALPSALRRVVAASNKRALMGFPDKVAAVISAGRYANEDLQSKAETIAAAAAAP----AAARLAELGACMADLIATDFEALDTAGLSPGIHQAMFRSLDVRVSLSNAAAAWALACPDAVCWERFPFVGLDPPSGRVVPL------EAKGPGGHKRRGELISSCDICEVRRGYNRESRTATVSE--------------------------------VRSSRSNGKLTACVGNSGFREGGGGVAVVGTAGVAASAFFATGFARWFERLEDQEAGYMEFVGFLVRVLDQMP 2079
+LE LVL IG+LS FWLP PL R ++ RRR+ L ++ G D V + I G NG V Q G+D + A A D PDL RYLD +AQA Q SAA+ A P +R L R G P FVD SAYDEVVLTT+WEAD L+AC++F+V TAE +RA G +RPYPLRT+IVGEG KA + REAL AMRR +VPP C ++VLE + +G E+ G+ W F GS +++L +LR R R GLA RGQG+ G SG + + RP+ G + LS DV E + +VNRV VVQL+DLV Y FPRAI+PDRTP LAAAVAGARG LPS LRR +AASN AL FPDKVA+ I AGRYANE+L+ A +IAAAA A R+AELGACMADLIA+DFEAL+ AGLSPG QA+FRSLDV ++LS+ AAAWAL DAVCWE P VGLD +GR++ L E G RR D E G V + V +G +CVG F ATGFA FE+LEDQEAGY F F+VRVLDQMP
Sbjct: 12 VLEGVLVLLIGVLSTFWLPLPLYRLREAVTCRRRRLRLLRQSEESGGKVD-VGADSKAIRPVGGRGAGNGGVDGQTTEGAAESLTGQDPKSAAAASDGFPDLGRRYLDFLAQALGQSHSAAAAAIAAPDRRTGLPRNGGGHPEGCFVDVSAYDEVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTKRPYPLRTLIVGEG----KASQAREALEAMRRTKLVPPDCRVDVLEPG-------------------EGAAKGEKRREDRGIEXXXXXXXXXXXXXXXXDGVWRSFLGSCSMLL-----LLLRSTLRWLSGRRRGLA-----------------------------------------RGQGE-----------------GXXXXXSGHSLRRQWHRRPSAGG----DEELSREDVEEALARVNRVLVVQLEDLVRPYGFPRAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIKAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGLSPGTQQAVFRSLDVGMALSDVAAAWALVRQDAVCWESCPRVGLDHSAGRLISLGDGARGEETGENSSGRRXXXXXXXDSIEGSAGRAXXXXXDIVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVRRTGDGLCGSCVGG----------------------FLATGFADGFEKLEDQEAGYGAFAVFIVRVLDQMP 656 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10033.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10033.91.1 >prot_P-canaliculata_contig10033.91.1 ID=prot_P-canaliculata_contig10033.91.1|Name=mRNA_P-canaliculata_contig10033.91.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=694bp ILETCLVLSIGILSRFWLPRPLVEARYSLASWRRRVLASGQDDGDSSDQVback to top mRNA from alignment at P-canaliculata_contig10033:1200..9749- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10033.91.1 ID=mRNA_P-canaliculata_contig10033.91.1|Name=mRNA_P-canaliculata_contig10033.91.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=8550bp|location=Sequence derived from alignment at P-canaliculata_contig10033:1200..9749- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10033:1200..9749- >mRNA_P-canaliculata_contig10033.91.1 ID=mRNA_P-canaliculata_contig10033.91.1|Name=mRNA_P-canaliculata_contig10033.91.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4164bp|location=Sequence derived from alignment at P-canaliculata_contig10033:1200..9749- (Pelvetia canaliculata dioecious)back to top |