Homology
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match:
D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI)
HSP 1 Score: 322 bits (825), Expect = 3.290e-104
Identity = 154/199 (77.39%), Postives = 168/199 (84.42%), Query Frame = 1
Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIA 591
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR GN+DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKD VV +LQPLAPS T FTIA
Sbjct: 77 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGNRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match:
A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE)
HSP 1 Score: 335 bits (860), Expect = 9.480e-101
Identity = 160/209 (76.56%), Postives = 176/209 (84.21%), Query Frame = 1
Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIAAHKRHRHKQQ 621
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR G++DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKDEVV +LQPLAPS T FTIAAH+RHR Q
Sbjct: 788 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVSQ 996
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match:
A0A835YL10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL10_9STRA)
HSP 1 Score: 67.4 bits (163), Expect = 4.870e-8
Identity = 60/223 (26.91%), Postives = 86/223 (38.57%), Query Frame = 1
Query: 34 HKFKFLPQLDRVCALCGKDFVRICTACGKCMECFR---VGNKDCVDGADT---SVPERPRSP------------------------PPPETSEERDWPEYPKTMTRNADGTN-----------------------VLQKRMERAIYDAIRTGDTHP----IVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGK 531
H+F++ C LC VRIC+AC +C+ C+R G C G ++ S P S P PE + + W K G N LQ R++RAIY A + ++ L+R N++R GET LHAAAY G + + ++ +D DSHGN P+DLA G+
Sbjct: 700 HRFRYRNVTAPGCTLCELTHVRICSACSRCVCCYREERFGPACCETGDESGRWSPPTDASSXXXXXXXXXXXXXXXXXXXXXILRKPKPEIAGDA-WRPGGKRDAGGGGGGNDXXXXXXXXXXXXXXPAGAPKLHTLQGRVDRAIYAAFTSDGKEERFAALLALLRHSGLHNYRRQTGETALHAAAYHGALRAARAMLDGGADADASDSHGNTPLDLARQHGR 921
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match:
A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA)
HSP 1 Score: 56.2 bits (134), Expect = 4.640e-6
Identity = 32/91 (35.16%), Postives = 46/91 (50.55%), Query Frame = 1
Query: 292 RMERAIYDAIRTGDTHPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPL 561
R R + G T L++ G PN R G T LH AA G +D V+ L+ +DP +D ++P DLAA G ++V ++LQ L
Sbjct: 36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match:
A0A2E6T4H9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T4H9_9BACT)
HSP 1 Score: 59.7 bits (143), Expect = 8.030e-6
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 271 GTNVLQKRMER--AIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDP--TVK--DSHGNLPVDLAAMQGKDEVVAYL 552
G NV K ++ A+ +AI+ G+T L+ G SPN G TCLH AAY G++D+ K L+ N+D TVK G P+D AAM GK + + L
Sbjct: 398 GANVHAKGVKERDALMEAIKIGNTEVAALLLDNGASPNSVDEDGVTCLHIAAYRGQVDICKKLLAGNADKDATVKVGPKKGFKPID-AAMDGKHQEIINL 496
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 3.29e-104 / Id = 77.39 Expect = 9.48e-101 / Id = 76.56 Expect = 4.87e-8 / Id = 26.91 Expect = 4.64e-6 / Id = 35.16 Expect = 8.03e-6 / Id = 40.00 Sequence D8LD31_ECTSI A0A6H5KU86_9PHAE A0A835YL10_9STRA A0A672H3I0_SALFA A0A2E6T4H9_9BACT back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria Seed ortholog score 62.8 Seed ortholog evalue 3.6e-07 Seed eggNOG ortholog 471857.Svir_21100 KEGG ko ko:K06867 EggNOG free text desc. Ankyrin repeat-containing protein EggNOG OGs 2IIAC@201174,4E4DI@85010,COG0666@1,COG0666@2 COG Functional cat. S Best tax level Pseudonocardiales Best eggNOG OG NA|NA|NA BRITE ko00000 Hectar predicted targeting category other localisation Ec32 ortholog description Ankyrin repeat-containing domain Ec32 ortholog Ec-11_000240.1 Exons 2 Model size 1530 Cds size 999 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815576.5022268-UTR-P-canaliculata_contig10030:842..1250 1622815576.5022268-UTR-P-canaliculata_contig10030:842..1250 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10030 843..1250 - 1693494146.463256-UTR-P-canaliculata_contig10030:842..1250 1693494146.463256-UTR-P-canaliculata_contig10030:842..1250 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10030 843..1250 - 1622815576.5474644-UTR-P-canaliculata_contig10030:3425..3548 1622815576.5474644-UTR-P-canaliculata_contig10030:3425..3548 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10030 3426..3548 - 1693494146.5121179-UTR-P-canaliculata_contig10030:3425..3548 1693494146.5121179-UTR-P-canaliculata_contig10030:3425..3548 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10030 3426..3548 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815576.519489-CDS-P-canaliculata_contig10030:1250..2112 1622815576.519489-CDS-P-canaliculata_contig10030:1250..2112 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10030 1251..2112 - 1693494146.484542-CDS-P-canaliculata_contig10030:1250..2112 1693494146.484542-CDS-P-canaliculata_contig10030:1250..2112 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10030 1251..2112 - 1622815576.5335424-CDS-P-canaliculata_contig10030:3288..3425 1622815576.5335424-CDS-P-canaliculata_contig10030:3288..3425 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10030 3289..3425 - 1693494146.4984515-CDS-P-canaliculata_contig10030:3288..3425 1693494146.4984515-CDS-P-canaliculata_contig10030:3288..3425 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10030 3289..3425 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10030.88.1
>prot_P-canaliculata_contig10030.88.1 ID=prot_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp
MECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADG back to top mRNA from alignment at P-canaliculata_contig10030:843..3548-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2706bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious)GGGAGTGCAGGCGATAGACGGGGCGAGTGGCCCCACAAGTTCAAATTTTT
GCCGCAGCTCGACCGAGTGTGTGCCTTGTGTGGCAAGGATTTTGTGCGGA
TATGCACCGCTTGCGGGAAATGC ATGGAATGCTTCCGTGTGGGAAACAAG
GACTGCGTCGATGGTGCGGACACGAGTGTCCCGGAGCGACCGCGCTCGCC
ACCGCCTCCCGAAACTTCGGAAGAGCGCGATTGGCCGGAGTATCCCAAGA
CGATGACAAG GTTAGCTCCTCCGTAGCCCTACGCACATTATTAATAGGTT
CAAGGTATTTGGCACCGCGAGCTGGTGAAGAATGACGGTGCAAACGTTGC
GATTTTGATCCCCCAGCTCCCGAGATTATTTCAACTTGTTTCATACTGTG
CTTGTGTAGAGCATAATCATTTTCCACCCTCCCTCTTGCGATTGTCTCAA
CTTGCTTCGAAGATACCATTTCTCTCGAGATATCTTCTTAGGAAGTCAAA
GCCTCGAAGTTACAGACTAGGGTTTTTACATTGGAGCCTATCCATGCATA
CACGCCAACATCTCTTAGGAAAAAAAGTGTTACCAGAGGTATACTCCGTT
TTCTTTTTTTCTTCTTAAATGTTGTGTTTTTTTTTTTTCTCACTCTCCCT
TTCGCGCATGTTGTGTGCCCCCCCCCCTCCGCGTCTTTTTCTCGTCTTGC
TTCGCGCCTGGAAATGATCCCCGCGACACAATGAAAGTACGAGTTTACGG
TTACGAAATGCGTCCATCTAGCGCGCTACCGAGATTCGTATATCATTGTA
CAGTATTAATGGTAAAGCCCGTGAAAATGAACGTCGAAGAACTAAACGCG
AGTTGTTGATAGAGCTTTTAGTGCAGCGAAAGCCTTTTTGACCGCCACCC
GTCTCGCGTGATCGCGGTTGTCGAGTAGCCCCTTTCAAATAGCAGATGCA
AAGAGCAAACCTTTGTAAATAGTTGGAACCAACGACCCCCCTCCCCCCTC
ACCTTCAAAGTATTGATGCAATTTTTGTCAATCTTTTTGTCTAGAAAAAA
CATACCGATAACATTGAGGGTTATTGAGTATTTCTTTCATTACGAACTAA
GAAGTGTTCTTGTTTTCCGGTTTCCCCACAAGTGTGTACGTACTATCATT
ACTGTTCGAGCTAATACTGTATTGTACCTAATGGGTAGTGTAGTGTAGTG
TAAGCCATTCAGTTAACATTGCTGTCGAGATTTGTGTGCGAATTGAAATG
AGATCAGAGATCCGACTTAATTACTCGGGTAACAATGTACTAGTGTACAG
CTGAAAATATAACATGTTCGCGGCCTCCGTCTCTCTAGAGACCCAAACCT
GATCTAACTACTCCCCGGCGTCCTCTGTTTCTCCCCCTTCATTTCTCCTG
TACTTTTTTTTTTTTTTTTCCCTTCTCCTTTGCCAGGAATGCGGACGGCA
CGAATGTGCTCCAGAAGCGCATGGAGCGGGCCATTTACGACGCCATTCGC
ACGGGCGACACTCATCCCATTGTCGGCCTCATTAGAGCAGGCGTGTCGCC
GAATTTCAAACGCCCGGCGGGAGAGACCTGTCTCCACGCCGCTGCATACT
GCGGCGAGATGGACCTCGTGAAGGACCTCATGGGGCGGAACTCGGATCCG
ACAGTGAAGGACTCGCACGGAAATCTGCCCGTGGATCTCGCGGCGATGCA
GGGGAAGGATGAAGTCGTGGCGTATTTACAACCTCTCGCTCCATCTTCTA
CAGCTTTCACGATCGCGGCGCACAAGCGACATCGCCATAAGCAGCAGCTC
AAGCAACAGAAGCAGCAGAAGGAGTATCAGCAGCAGCAGCAGCAGTTGCA
GCAGCAGCAGCAGTTGCAGCAGCAGCAAGAACAGGAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAATTCCAGCTACGACAGCAGCAGCTACAACTGCAG
CAGCAGCAACGGCAACATCAGCAGCAACATCATCTACAGCAGCAGCAGCA
GCAGCAGTACCTGGCACCTGGTCATCCTCAACCGCACCAAGCGCGCCAGG
GGTTTCTGCCGCTCCTTCCTCAGCATCTACGGCAGCAGCATCAACGACAG
CCGCAGCCTTTTCAGCTGCAGCAGCCGCCACCCCTCTTTGCCCCCCACAA
CCCCCACGGTTCTCTCCCCCCCCCTTCTGCTCAGTTTCGTGCGCAAAATT
CTCTGCAGCAGCTTCAGCCGCACCAGCAGCAGCAACCCCCTCATCAGCCG
CCGCAGCAGCAGCAACAACAGCAGCAATCCCACCCTGGGAGGGGGTAG TA
ATAGTAATAGTAGGTTTTCGTATGTCAATCGATTGCGACCATGACAGACA
CAATAATCGTTAAATTCAGCGTGCGATGGCGGGAGGCAAAACGGAATGTA
GCGCGACTGTGTCCATTTTAATACAGGAATCCTATCTTTGTGGCTTTGGG
AGATAAGGTAACGATTGGTGGGAAAGTGGAAAGTAATTCCTTCCTATGTC
TGTCTGTTTGCGGCTGATGTACCTTGAATCATGACGTGCACGTAGAATTG
AAGTAAATAATAAAGCGGTGGGCTCGGTAACATACATCCTTCTGAAAGCC
GTCCGTTTGAAAGAGTATGGTCGATGGACTATTTTCTGGACTCAAGTCGT
TTTTATGTGCGATACGGTACGTTTCTTTGTGTACAAGACTTCGCTGTATT
CTGTTG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10030:843..3548-
>mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious) back to top