mRNA_P-canaliculata_contig10030.88.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: D8LD31_ECTSI (Ankyrin repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD31_ECTSI) HSP 1 Score: 322 bits (825), Expect = 3.290e-104 Identity = 154/199 (77.39%), Postives = 168/199 (84.42%), Query Frame = 1 Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIA 591
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR GN+DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKD VV +LQPLAPS T FTIA
Sbjct: 77 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGNRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDAVVGFLQPLAPSKTPFTIA 275
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A6H5KU86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU86_9PHAE) HSP 1 Score: 335 bits (860), Expect = 9.480e-101 Identity = 160/209 (76.56%), Postives = 176/209 (84.21%), Query Frame = 1 Query: 4 SAGDRRGEWPHKFKFLPQLD---RVCALCGKDFVRICTACGKCMECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGTNVLQKRMERAIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPLAPSSTAFTIAAHKRHRHKQQ 621
S D RGEWPH+FKF PQL +VCA+CGKDFVRICTACGKCMECFR G++DCV+GA + P R SPPP +ER+WPEYPKTMTRN DGT+VL+KRMERAIY+AIR GDT PIVGLIRAGVSPNFKRPAGETCLHAAAYCG +DLVKDL R +DP VKDSHGNLPVDLAAMQGKDEVV +LQPLAPS T FTIAAH+RHR Q
Sbjct: 788 SRRDTRGEWPHEFKFRPQLGGSRKVCAVCGKDFVRICTACGKCMECFRAGDRDCVEGAVNNTPPRRLSPPPEALPDEREWPEYPKTMTRNKDGTSVLEKRMERAIYEAIRLGDTEPIVGLIRAGVSPNFKRPAGETCLHAAAYCGALDLVKDLAERKADPAVKDSHGNLPVDLAAMQGKDEVVGFLQPLAPSKTPFTIAAHQRHRRVSQ 996
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A835YL10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL10_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 4.870e-8 Identity = 60/223 (26.91%), Postives = 86/223 (38.57%), Query Frame = 1 Query: 34 HKFKFLPQLDRVCALCGKDFVRICTACGKCMECFR---VGNKDCVDGADT---SVPERPRSP------------------------PPPETSEERDWPEYPKTMTRNADGTN-----------------------VLQKRMERAIYDAIRTGDTHP----IVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGK 531
H+F++ C LC VRIC+AC +C+ C+R G C G ++ S P S P PE + + W K G N LQ R++RAIY A + ++ L+R N++R GET LHAAAY G + + ++ +D DSHGN P+DLA G+
Sbjct: 700 HRFRYRNVTAPGCTLCELTHVRICSACSRCVCCYREERFGPACCETGDESGRWSPPTDASSXXXXXXXXXXXXXXXXXXXXXILRKPKPEIAGDA-WRPGGKRDAGGGGGGNDXXXXXXXXXXXXXXPAGAPKLHTLQGRVDRAIYAAFTSDGKEERFAALLALLRHSGLHNYRRQTGETALHAAAYHGALRAARAMLDGGADADASDSHGNTPLDLARQHGR 921
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A672H3I0_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672H3I0_SALFA) HSP 1 Score: 56.2 bits (134), Expect = 4.640e-6 Identity = 32/91 (35.16%), Postives = 46/91 (50.55%), Query Frame = 1 Query: 292 RMERAIYDAIRTGDTHPIVGLIRAGVSPNFK-RPAGETCLHAAAYCGEMDLVKDLMGRNSDPTVKDSHGNLPVDLAAMQGKDEVVAYLQPL 561
R R + G T L++ G PN R G T LH AA G +D V+ L+ +DP +D ++P DLAA G ++V ++LQ L
Sbjct: 36 RFGRTALQVMMMGSTPVAQVLLKHGADPNVADRSTGATPLHDAARTGFLDTVRLLVHFGADPRARDHANDVPADLAAQHGHEDVASFLQTL 126
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Match: A0A2E6T4H9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6T4H9_9BACT) HSP 1 Score: 59.7 bits (143), Expect = 8.030e-6 Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 271 GTNVLQKRMER--AIYDAIRTGDTHPIVGLIRAGVSPNFKRPAGETCLHAAAYCGEMDLVKDLMGRNSDP--TVK--DSHGNLPVDLAAMQGKDEVVAYL 552
G NV K ++ A+ +AI+ G+T L+ G SPN G TCLH AAY G++D+ K L+ N+D TVK G P+D AAM GK + + L
Sbjct: 398 GANVHAKGVKERDALMEAIKIGNTEVAALLLDNGASPNSVDEDGVTCLHIAAYRGQVDICKKLLAGNADKDATVKVGPKKGFKPID-AAMDGKHQEIINL 496 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10030.88.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10030.88.1 >prot_P-canaliculata_contig10030.88.1 ID=prot_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=333bp MECFRVGNKDCVDGADTSVPERPRSPPPPETSEERDWPEYPKTMTRNADGback to top mRNA from alignment at P-canaliculata_contig10030:843..3548- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2706bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10030:843..3548- >mRNA_P-canaliculata_contig10030.88.1 ID=mRNA_P-canaliculata_contig10030.88.1|Name=mRNA_P-canaliculata_contig10030.88.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1998bp|location=Sequence derived from alignment at P-canaliculata_contig10030:843..3548- (Pelvetia canaliculata dioecious)back to top |