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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 61.2 |
| Seed ortholog evalue | 3.6e-07 |
| Seed eggNOG ortholog | 583355.Caka_2799 |
| EggNOG free text desc. | PFAM peptidase S8 and S53 subtilisin kexin sedolisin |
| EggNOG OGs | 3K8IM@414999,46VP5@74201,COG1404@1,COG1404@2,COG3391@1,COG3391@2 |
| COG Functional cat. | O |
| Best tax level | Opitutae |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 351 |
| Cds size | 351 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815575.149295-CDS-P-canaliculata_contig100216:345..696 | 1622815575.149295-CDS-P-canaliculata_contig100216:345..696 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100216 346..696 - |
| 1693494145.6417868-CDS-P-canaliculata_contig100216:345..696 | 1693494145.6417868-CDS-P-canaliculata_contig100216:345..696 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100216 346..696 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100216.77.1 >prot_P-canaliculata_contig100216.77.1 ID=prot_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
TSVTRPVSVTNPGAETVTISSVQTSPPFSFTGALPITIPGRSSRSFPLVF
SPITTGSSTVNLKLSTEELGDPPTIVTLSGTGTPAPSISISQSGFNETVA
LGTGEFTRTITLTNTGA back to topmRNA from alignment at P-canaliculata_contig100216:346..696- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100216.77.1 ID=mRNA_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at P-canaliculata_contig100216:346..696- (Pelvetia canaliculata dioecious)
ACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGGT
TACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCGC
TACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTTC
TCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTGA
GGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACTC
CAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGCA
CTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAGC
C back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100216:346..696- >mRNA_P-canaliculata_contig100216.77.1 ID=mRNA_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig100216:346..696- (Pelvetia canaliculata dioecious)
ACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGGT
TACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCGC
TACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTTC
TCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTGA
GGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACTC
CAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGCA
CTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAGC
CACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGG
TTACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCG
CTACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTT
CTCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTG
AGGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACT
CCAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGC
ACTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAG
CC back to top
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