Homology
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Match:
D8LG66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG66_ECTSI)
HSP 1 Score: 193 bits (491), Expect = 3.750e-55
Identity = 99/168 (58.93%), Postives = 124/168 (73.81%), Query Frame = 1
Query: 124 VEEVEEEERKAALAWKDDGRKGRVLVRRREVPLPERDPVSVCQLVLQSLKINDDPMLNYGAAVAIKHASSRNPMRKMTPKDLGAFLQNDPEMVMLIANSDCRPAERAKISPDGTRVLQKVELVGSRTMQDDGWVKYGGGMERVVEVQLVKE-DGCWMIDAFFFQPAVE 624
VE EEEE++A W+DDGRKGRVLVRR+E+P P DP SVCQLV +SL+ NDDPML+YGAAVA+K ASS++ +R MTP + GAFL+NDP+ V+L+ N+ C PAERAK+S DG +VLQKVE+VG +Y + R+VEVQL KE D CW +DA F P VE
Sbjct: 101 VETEEEEEQRAVREWQDDGRKGRVLVRRKEIPSPAMDPASVCQLVFESLQNNDDPMLDYGAAVAVKFASSKSAVRNMTPAEYGAFLRNDPDQVLLVDNASCAPAERAKVSADGKQVLQKVEVVG----------RYPDVVRRIVEVQLTKEEDDCWRVDAMTFGPNVE 258
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Match:
A0A7S1K9A5_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1K9A5_9ALVE)
HSP 1 Score: 67.4 bits (163), Expect = 7.560e-10
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 193 VLVRRREVPLPERDPVSVCQLVLQSLKINDDPMLNYGAAVAIKHASSRNPMRKMTPKDLGAFLQNDPEMVMLIANSDCRPAERAKISPDGTRVLQKVELVGS----RTMQDDGWVKYGGGMERVVEVQLVKEDGCWMIDAFF 606
VL RR ++P P D V + VL +L+ NDDP L++GAAV IKHAS N + P G++L+N E +L+ + + +Q+V L G ++ D + + + V+ +L GCWMID F
Sbjct: 3 VLERRGDLPQPGEDARVVIEKVLDALQTNDDPQLDHGAAVTIKHASRDNIISNFNPAQYGSYLRNS-EYRVLLNRDTFEFVGPPQYDSNKEHCVQRVVLEGHHPNFQSWSDREFFR------KEVDFRLSLHRGCWMIDGVF 137
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Match:
A0A0G4GLI9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GLI9_VITBC)
HSP 1 Score: 67.4 bits (163), Expect = 3.770e-9
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 193 VLVRRREVPLPERDPVSVCQLVLQSLKINDDPMLNYGAAVAIKHASSRNPMRKMTPKDLGAFLQNDPEMVMLIANSDCRPAERAKISPDGTRVLQKVELVGS----RTMQDDGWVKYGGGMERVVEVQLVKEDGCWMIDAFF 606
VL RR ++P P D V + VL +L+ NDDP L++GAAV IKHAS N + P G++L+N E +L+ + + +Q+V L G ++ D + + + V+ +L GCWMID F
Sbjct: 86 VLERRGDLPQPGEDARVVIEKVLDALQTNDDPQLDHGAAVTIKHASRDNIISNFNPAQYGSYLRNS-EYRVLLNRDTFEFVGPPQYDSNKEHCVQRVVLEGHHPNFQSWSDREFFR------KEVDFRLSLHRGCWMIDGVF 220
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Match:
A0A6H5KJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ37_9PHAE)
HSP 1 Score: 65.5 bits (158), Expect = 8.620e-8
Identity = 52/159 (32.70%), Postives = 72/159 (45.28%), Query Frame = 1
Query: 217 PLPERDPVSVCQLVLQSLKINDDPMLNYGAAVAIKHASSRNPMRKMTPKDLGAFLQNDPEMVMLIANSD---CRPAERAKIS---PDGTRVLQKVELVGSRTMQDDGWVKYGGGMERVVEVQLVKEDGCWMIDAFFFQP-AVEGTLAG*SLADRPQDPA 672
P PE P V + LQ+L+ D P N+G +AI+ +S+ NP TP + ++ +DP M SD P A+I PD R Q+V + R D W V + LVKEDGCW+I+ + +V G AG P PA
Sbjct: 116 PNPEHPPSHVAAVTLQALRRTDVPYTNFGCEIAIRFSSTSNPASGFTPGGMRTYI-DDPSMPFYRVLSDWDEMAPVGGAEIDVAEPD--RANQQVRV---RKEGDPAW--------STVSLDLVKEDGCWLIERLWIDDRSVAGGRAGGGREASPXXPA 260
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Match:
A0A0G4G2B9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G2B9_9ALVE)
HSP 1 Score: 60.1 bits (144), Expect = 1.470e-6
Identity = 43/145 (29.66%), Postives = 69/145 (47.59%), Query Frame = 1
Query: 163 AWKDDGRKGRVLVRRREVPLPERDPVSVCQLVLQSLKINDDPMLNYGAAVAIKHASSRNPMRKMTPKDLGAFLQNDPEMVML-IANSDCRPAERAKISPDGTRVLQKVELVGSRTMQDDGWVKYGGGMERVVEVQLVKEDGCWMI 594
AW+ D ++ R + P P V V++ L++NDDP L++GAAV I+H++ + +R +TP G FL+ +L A D E ++ D T + Q V + G D + + V+ + KEDG W I
Sbjct: 103 AWEGDWE---IMRRTDQEPEEGEHPYKVIVKVMEGLQVNDDPQLDHGAAVVIRHSAKGSILRNLTPSQYGRFLRRTRYKCLLNFAEFDI--LEEPVLNEDKTELQQVVAIEGYLPNFQDYFARKH--FRENVKFDMKKEDGHWRI 240
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10020.75.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 3.75e-55 / Id = 58.93 Expect = 7.56e-10 / Id = 32.39 Expect = 3.77e-9 / Id = 32.39 Expect = 8.62e-8 / Id = 32.70 Expect = 1.47e-6 / Id = 29.66 Sequence D8LG66_ECTSI A0A7S1K9A5_9ALVE A0A0G4GLI9_VITBC A0A6H5KJ37_9PHAE A0A0G4G2B9_9ALVE back to top
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815574.9736238-UTR-P-canaliculata_contig10020:3591..4319 1622815574.9736238-UTR-P-canaliculata_contig10020:3591..4319 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10020 3592..4319 - 1693494145.5260382-UTR-P-canaliculata_contig10020:3591..4319 1693494145.5260382-UTR-P-canaliculata_contig10020:3591..4319 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10020 3592..4319 - 1622815575.064167-UTR-P-canaliculata_contig10020:8853..8931 1622815575.064167-UTR-P-canaliculata_contig10020:8853..8931 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10020 8854..8931 - 1693494145.6163478-UTR-P-canaliculata_contig10020:8853..8931 1693494145.6163478-UTR-P-canaliculata_contig10020:8853..8931 Pelvetia canaliculata dioecious UTR P-canaliculata_contig10020 8854..8931 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815575.0006814-CDS-P-canaliculata_contig10020:4319..4514 1622815575.0006814-CDS-P-canaliculata_contig10020:4319..4514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 4320..4514 - 1693494145.5385919-CDS-P-canaliculata_contig10020:4319..4514 1693494145.5385919-CDS-P-canaliculata_contig10020:4319..4514 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 4320..4514 - 1622815575.0148091-CDS-P-canaliculata_contig10020:5017..5191 1622815575.0148091-CDS-P-canaliculata_contig10020:5017..5191 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 5018..5191 - 1693494145.5626066-CDS-P-canaliculata_contig10020:5017..5191 1693494145.5626066-CDS-P-canaliculata_contig10020:5017..5191 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 5018..5191 - 1622815575.028735-CDS-P-canaliculata_contig10020:6957..7022 1622815575.028735-CDS-P-canaliculata_contig10020:6957..7022 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 6958..7022 - 1693494145.585521-CDS-P-canaliculata_contig10020:6957..7022 1693494145.585521-CDS-P-canaliculata_contig10020:6957..7022 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 6958..7022 - 1622815575.0408907-CDS-P-canaliculata_contig10020:7940..8028 1622815575.0408907-CDS-P-canaliculata_contig10020:7940..8028 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 7941..8028 - 1693494145.5978298-CDS-P-canaliculata_contig10020:7940..8028 1693494145.5978298-CDS-P-canaliculata_contig10020:7940..8028 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 7941..8028 - 1622815575.0519452-CDS-P-canaliculata_contig10020:8811..8853 1622815575.0519452-CDS-P-canaliculata_contig10020:8811..8853 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 8812..8853 - 1693494145.606776-CDS-P-canaliculata_contig10020:8811..8853 1693494145.606776-CDS-P-canaliculata_contig10020:8811..8853 Pelvetia canaliculata dioecious CDS P-canaliculata_contig10020 8812..8853 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10020.75.1
>prot_P-canaliculata_contig10020.75.1 ID=prot_P-canaliculata_contig10020.75.1|Name=mRNA_P-canaliculata_contig10020.75.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=188bp
MPEGMRNCVMFPPKTVEEVEEEERKAALAWKDDGRKGRVLVRRREVPLPE back to top mRNA from alignment at P-canaliculata_contig10020:3592..8931-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10020.75.1 ID=mRNA_P-canaliculata_contig10020.75.1|Name=mRNA_P-canaliculata_contig10020.75.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=5340bp|location=Sequence derived from alignment at P-canaliculata_contig10020:3592..8931- (Pelvetia canaliculata dioecious)AGACGGGCGCGTCGGGGACGAATACTCGCGGCGGGGGCACCCCGAGCGGA
CGGCCTCCCCCCGGAGGACCTCGAGTGG ATGCCCGAAGGCATGCGCAACT
GCGTCATGTTCCCTCCGAAG GTTGAGGCTTTCCATTTGTGCCTCTAACGC
CTATCTAATGGCTATGCTGCTGCCATCTAACGCTATGTAACGTCCATGTT
GTACATCTAACATCTGTGTAATGTCCTCTAATGCCCATATAATATATAGC
TCCAACGCCAACACCTAATGTATACACGGTATAACACCGTGCCTGTCTGA
TGCCTATCTGATGCATATCTAAACCTGTGTCTATCTACTGAAGTAACGCC
TATCTACTAAAGTAGACACTATCACGTCACTACTGTAGCTCTAGTATTTT
TTTATCTAAAATAGTCTACGAGCAGTAAGATTATTGCGACCACTTATTAT
TTAATCAATTGGGAACCCTTATTTTTTTAAACACTGCATAAACCAGTCGA
TTGGGAACATGTAATACTGCACAGAATCTATGCGATGTGGCGATGGGATA
TATTTCTAGCCCTCATACCCATGACAGGGATGTCCTTGATGTCATTGTGA
TGAAAGCAAAGCAAAGCAAAGCACAGCACAGCACAGTCAGTTGTCGTGCG
TGCGGCGATGACGCGCTGTGCCAACTTCGACGAAAATGTGGGGGTTTCGA
TTGGTTGGTTTCGTTGGGCGAAGGGGAGGGGGAGAAGAGGGCAGAGGGGT
TCGTCCTTTCGTGTCTCTCGACTTGTGCCTTGACCTTCGAAGCATATGAT
GAAAAAGCAGCCGACATCTTAAGTAGATGTATTCGATAATCAACGAAAAC
AACCTTTTTAATGGGCAAAGAAATATTCATATTTATATGAATGTTAATGT
TAGACCGTGGAGGAGGTCGAAGAGGAGGAGCGCAAGGCGGCGTTGGCCTG
GAAGGACGACGGCCGCAAGGGGAGGGTGCTCGTGCGAAGAC GTGAGTCTG
ACCAGCTCCTTTCGATGTGCGAATCCGTTTGATTCGATGTTCTGCCACGG
AGATGGGAATTTGTTGCTTGTTAAACATTTCTCCTCTCTCCGTGCAGTAT
TGATTCGAGCCATGCTTTGTACTTGTAGTATAAATATTATCCCATTTTAG
TGTTCAATGCCTTCCACGTTGTAGAAACCTCGCGAAACAGTACATGGGCC
AGAGTACAGCAGTAGCTCCTGTTGCCGAGAGGCACGCACAGCTACACTAC
ACTATACCATACGACAACTGCACTACATTACGCTATCGATAGACGACACT
ACACTATATTACGCTATTGATAGACGCTACTACACTACACGAGGCCACAC
TATACGACACTATACTACGTTACGCTATTGATGGACGACTTTGCACTACA
CTACACCCCACGACAACTGTACTACATTACGTTGGACGACACTACCCTAC
ACTATACCACACTACGCTTCTGGTAGACGACACCACACCACACGGCGACT
ATACTACGCTACATTACGTTAGACGACACTGTACTACATTACGCTATTGA
TAGACGACACTACACTACACTATACCACATTGCGATATTGATAGACGACA
CTACACTGCACTACGCCCCACGACAACTACACGACACGACAACTATACTA
CGTTTCGCTAGACGACACGATACACTAACCGTGGAATGGCCTGCTATTCA
TATTCATATGGGGGATTGACGGTGACGTTGGACGGTCGGGTAAAAAAGCG
GCAGACAGAGCACATTGCGGATAAAAAAAATAAAACAAGCATATGCCAGA
CAATGACGACACCAATGATGCCCCTCCCCCCCCCCTCCCCCCCCCCCCAA
TCGCCAACCGCCAACCTCACCAAACCTCGGTGCCTGCACGCCTGCGCCGA
TTGTCTCAGGCGAGGTGCCGCTGCCCGAGAGAGACCCCGTGTCGGTTTGC
CAACTCGTCTTGCAGTCCTTGAAG GTAAGGCACGACAGGGACCTCCCTGA
GACATGAACTTTGAAACGAAATTTCTGCCTGTGGGATGATCTACACTATC
ATCCCGTGTGTCTGAGGACAATATGTTTGGTCATCGCTTGTACAAGAGTG
GATCAACCGGGTAAAGGTCGCAGTCCTGCTCGTGGTCAGCTGAACAGGGA
AAATGCATTTTTTTTTTCCGTGTCTCCGTTCGCGCCTGAAAATCTGGTCT
CGCGAGACGGATTCGGCCGTCCCGTCCCGCGCCAGCCCGCCCATTCTCCA
CACTCTATTAATATTATCAATATTATTAATAATATTAATACTTTTAATAG
GCTGAATCTGGTGCTTACTCACGGGATTCCTCCCACTTTCCCCTACGGCG
TTTACATATACCGTCGACCATCATCGGGTCAGTCCCGAGTATATCGGGTC
ACGCAATTGCGTACCGATGGCGTTCCCTGCCGAGAGTCCGCCGGCACAGG
GCCAGTAGTCCTTAGGGTAATTCCAGTAACGGGTGCCTCCTTTTCAGGTG
TCACCATGGACCAGTTTTCATGCGCCTCTATTTTCCCACACCCGCCCAAT
AATGGTGTGTAGTGGGCATGTGTGATACTGTACATCAAGTAAAGTCAGAG
GCGTTTACAGTCTAGAGGATATAGAGCATAGGGTATCGTTCTGCCCGCTG
CTCTTGAGAGGGATCTTTTGCTCTCAAAGACTACTACACTATGTATTAAA
TAGAGCTATACTGTCTTCCACGTCTTTCTAATATTAATACTATATACTAT
ATACTGTAGCCTAATAATAACTTTGCCTTCCCTTTTGTGTGTTCGTGTGT
TTGTATGTGTTTGTATATATCTACGTGTATGTTAAATTGCACATAACCAC
GCAATCCGCCCTTGTCATCCTATACCACACTCTCATTGGTTCTTTCAAGA
ATAGGGTATTAAGGGATCAATGATACTCGTTACGAAAAGCTCTGATCCGG
GACGAGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACG
GGGACAGGGAAAAAATCATTTTCCCTATTCAGCTGACCACGAGCAGGATT
GGCAGCCTTACTAATACCCGGTTGATCCGTACTCTTGCTAGAAGGGATGA
ACATGCATTACTATCTCTAGAGTTCTCATTTACAACATATTGAAGCCCTC
GGCGCCCTGCGCTTCCCCTCTCTGCTTCAAACAGTAGTTATCATCTATTG
AATAGTATCTACCAGTAGTTATTATCTAGTTATTATATATTTGCTAGTTA
TTCTCGAGATTGTCGGTGTGCGATCTGTGTCTGTGTCTCGGTGTGTTTAT
TTTATTGTGCCGGGAGAGAGAGAGAGAGAGAAAAAAAAGAGTGTCGATTG
TTATCTTGTACTGGGGAAAAGCGATTTCGCCCCCCTTACTATGAAGTGCA
GTATTATTATAGAATAGACTATAGTTATAAAGTGGTTATTACTAGTCGTG
GTTATTACTAGAATAGTGATGGTTATTACTAGTGGTGGTTATTATTACTA
GTGGTGGTTATTACTACTAGTAGTGGTTATTACAAGTGGTGGTTATTATT
ACTATTATAGTTGTAGCCAACAATAACACCAAGAGAGAGTGTATCATCTT
GCACAGTATTGATATTATAGCAGATTTTCCATCACGTTCCATCATATTCC
ATAATTTCGCACCATCCTCCCACGCCCACTGGTCTTGTCCAATAACATTC
CACGTTTTTGCTCTGTGTCGCGTTGTCGCTTGGGGGATAGATCAACGATG
ATCCCATGCTCAACTACGGCGCAGCGGTGGCGATCAAGCACGCGTCGTCG
CGGAACCCCATGAGGAAGATGACGCCCAAGGATCTGGGCGCATTTCTCCA
GAACGACCCGGAAATGGTGATGCTCATCGCAAACTCCGACTGCCGCCCTG
CCGAGAGGGCCAAG GTGCGCCACGCGTTGTCGGCTGTCACGTTTGTCTAC
TGTCAAGGCGTGATGTGTGTCGAAGGTGTTTGAAGTAAAAGGGAACCGAA
GATTCTGTATATCTATATAGATCTTTTGATACGGTATATATACTCTTAGG
GCATGCCACGCGGCTGCGGTATGCTATTAACAACCGAGAATAGGTTAGCC
CAGCAAGGGAGCGGTACATCCCGCCAGACCGATCCGACGGGGAGGAACCT
AATAATAGGATGGCCTCATGATAGAACAGTCTAAGATTTAGAATAGCTGC
CTTAATACGCTACCGTTTCCATTAGGGGGTACTAGTAATACTAATAATGC
TATAATAGTGCTACAATATACGTATATATATTAATTAATAGTTAGTGCTA
CCGTACGAGATTTATTTTTCGCTTGTAAAGCGAAATGTTTTTTGTTTTTG
TTTGCATCGGCTACTGGCGTGCCGTGTCGTGTCGTGCCGTGTCGCCCTTG
CGTGCTCGAGAGCGCAGATATCTCCGGACGGGACGCGGGTCCTCCAGAAG
GTAGAGCTGGTCGGCTCGCGGACCATGCAGGATGACGGCTGGGTCAAGTA
CGGTGGGGGCATGGAGAGGGTCGTGGAAGTGCAGCTGGTCAAGGAGGACG
GCTGCTGGATGATCGATGCCTTTTTCTTCCAGCCCGCGGTTGAGGGAACG
CTGGCCGGCTGA TCTCTCGCCGACAGACCGCAGGATCCCGCCAGTTGACC
GACTGCAAGATCTCGCCGAACGCAGAATCTCGCACACTGACCGCCAGATG
TCGTCAATCGCCGAATGTCGTCGATTGCTGGATATCGCCAGGTGTTGTCC
GAACTACCTGGTATGCCGAATGAAAAAAGATACGAGTGCCCGAATAAGAA
TTATACCGGGAATGATCAACTGAGCAGCGGAGCGAGGCGAGTTGGATAGC
GTCTTCCAGTAGATTATTTCGAGGTATTGCGGTTATTGTCGCCTTGTAGT
ACGTACAGTCTTCCAGTAGGATATTACCGCACATCGCCGTGGAATGTAAC
GTAGAAGATGGTCATTACAGTGGCTATTACAGTGACTATTACAGTGAGTA
TTGTAGTGACTATCGTATAGACTATTATAGCACGAACCTATTCTAATGAC
TATCGTATAGACTATTGTAGCACGAACCTATTATAGGGACTACCGTAGTG
ACTATCGTAGTGGTTATTAGAGTGACCACCGTAGGGACTATGTAGCGACT
TTTGTAGTGACTATCGTAGTGACTATCGTAGTGACTACCGTTATCAGTAA
TGTTAAGCGTTGTTGGAGACTTGCCGACCCGCCAGCCAATCGCTGGTACA
GGTGGTTGGGTAAAAAAACACACACACATCCATATATACCTGAACGTGCT
GACCATACAAAATGCTAAGTAATAAATAATTATCGATGCA back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10020:3592..8931-
>mRNA_P-canaliculata_contig10020.75.1 ID=mRNA_P-canaliculata_contig10020.75.1|Name=mRNA_P-canaliculata_contig10020.75.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at P-canaliculata_contig10020:3592..8931- (Pelvetia canaliculata dioecious) back to top