mRNA_P-canaliculata_contig100100.59.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	531
Cds size	336
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100100.59.1	prot_P-canaliculata_contig100100.59.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100100 436..815 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815573.8577046-UTR-P-canaliculata_contig100100:248..435	1622815573.8577046-UTR-P-canaliculata_contig100100:248..435	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100100 249..435 -
1693494144.8062937-UTR-P-canaliculata_contig100100:248..435	1693494144.8062937-UTR-P-canaliculata_contig100100:248..435	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100100 249..435 -
1622815573.888759-UTR-P-canaliculata_contig100100:815..823	1622815573.888759-UTR-P-canaliculata_contig100100:815..823	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100100 816..823 -
1693494144.8408654-UTR-P-canaliculata_contig100100:815..823	1693494144.8408654-UTR-P-canaliculata_contig100100:815..823	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100100 816..823 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815573.868128-CDS-P-canaliculata_contig100100:435..598	1622815573.868128-CDS-P-canaliculata_contig100100:435..598	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100100 436..598 -
1693494144.8164074-CDS-P-canaliculata_contig100100:435..598	1693494144.8164074-CDS-P-canaliculata_contig100100:435..598	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100100 436..598 -
1622815573.877995-CDS-P-canaliculata_contig100100:642..815	1622815573.877995-CDS-P-canaliculata_contig100100:642..815	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100100 643..815 -
1693494144.8279314-CDS-P-canaliculata_contig100100:642..815	1693494144.8279314-CDS-P-canaliculata_contig100100:642..815	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100100 643..815 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig100100:249..823-
coding sequence from alignment at P-canaliculata_contig100100:249..823-

protein sequence of mRNA_P-canaliculata_contig100100.59.1

>prot_P-canaliculata_contig100100.59.1 ID=prot_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
MAARVKEEEKASGYRQRNRDTEEADKVEVSPGVTVASLRRFRSALIGPTQ
GSPKRRQLCYAFGCMVVIRGGYRMACGWHYTKLSLSSALLQFFSGMCFVF
DTVPLFLSFFV*

mRNA from alignment at P-canaliculata_contig100100:249..823-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=575bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
GTAGGTTTATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATAC
CGGCAGAGGAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACC
TGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGAC
CAACCCAAGGATCCCCTAAGCGACGTCAACTGTGCCGATAGAGAAACTTG
AAACCCTGAGGGTACGGAGTTGTAGATGCTACGCGTTTGGGTGCATGGTT
GTGATCCGGGGAGGGTACCGGATGGCTTGCGGCTGGCACTATACCAAACT
CTCTCTATCGAGTGCCCTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTT
TTGATACTGTTCCTCTATTTTTATCGTTTTTTGTTTAATTTTTGTTTTCA
TGCTTTCGTTGGAGCTTTGTAGATGTTTCTCGGATCTCTTTCTGCCCAGC
AGACCACGTATCGGATTGGCAACCACTTATATTACTGGGTATAGTTCAGG
CCCGATCGGTTAATGTTAAAAGACACAACATGATCATGTTACTGTAGTCC
TGATCCCTTACTCGAAATACATTCT

Coding sequence (CDS) from alignment at P-canaliculata_contig100100:249..823-

>mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
ATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATACCGGCAGAG
GAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACCTGGGGTGA
CTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGACCAACCCAA
GGATCCCCTAAGCGACGTCAACTATGGCCGCGCGGGTGAAGGAAGAGGAA
AAGGCGTCCGGATACCGGCAGAGGAATAGAGACACGGAAGAGGCGGACAA
GGTTGAGGTTTCACCTGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGAT
CCGCGTTGATTGGACCAACCCAAGGATCCCCTAAGCGACGTCAACTATGC
TACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGTACCGGATGGCTTG
CGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCCCTCCTTCAATTTT
TTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCTATTTTTATCGTTT
TTTGTTTAAATGCTACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGT
ACCGGATGGCTTGCGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCC
CTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCT
ATTTTTATCGTTTTTTGTTTAA

mRNA_P-canaliculata_contig100100.59.1 (mRNA) Pelvetia canaliculata dioecious

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