Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 531 |
| Cds size | 336 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815573.8577046-UTR-P-canaliculata_contig100100:248..435 | 1622815573.8577046-UTR-P-canaliculata_contig100100:248..435 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig100100 249..435 - |
| 1693494144.8062937-UTR-P-canaliculata_contig100100:248..435 | 1693494144.8062937-UTR-P-canaliculata_contig100100:248..435 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig100100 249..435 - |
| 1622815573.888759-UTR-P-canaliculata_contig100100:815..823 | 1622815573.888759-UTR-P-canaliculata_contig100100:815..823 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig100100 816..823 - |
| 1693494144.8408654-UTR-P-canaliculata_contig100100:815..823 | 1693494144.8408654-UTR-P-canaliculata_contig100100:815..823 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig100100 816..823 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815573.868128-CDS-P-canaliculata_contig100100:435..598 | 1622815573.868128-CDS-P-canaliculata_contig100100:435..598 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100100 436..598 - |
| 1693494144.8164074-CDS-P-canaliculata_contig100100:435..598 | 1693494144.8164074-CDS-P-canaliculata_contig100100:435..598 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100100 436..598 - |
| 1622815573.877995-CDS-P-canaliculata_contig100100:642..815 | 1622815573.877995-CDS-P-canaliculata_contig100100:642..815 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100100 643..815 - |
| 1693494144.8279314-CDS-P-canaliculata_contig100100:642..815 | 1693494144.8279314-CDS-P-canaliculata_contig100100:642..815 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig100100 643..815 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100100.59.1 >prot_P-canaliculata_contig100100.59.1 ID=prot_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
MAARVKEEEKASGYRQRNRDTEEADKVEVSPGVTVASLRRFRSALIGPTQ
GSPKRRQLCYAFGCMVVIRGGYRMACGWHYTKLSLSSALLQFFSGMCFVF
DTVPLFLSFFV* back to topmRNA from alignment at P-canaliculata_contig100100:249..823- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=575bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
GTAGGTTTATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATAC
CGGCAGAGGAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACC
TGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGAC
CAACCCAAGGATCCCCTAAGCGACGTCAACTGTGCCGATAGAGAAACTTG
AAACCCTGAGGGTACGGAGTTGTAGATGCTACGCGTTTGGGTGCATGGTT
GTGATCCGGGGAGGGTACCGGATGGCTTGCGGCTGGCACTATACCAAACT
CTCTCTATCGAGTGCCCTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTT
TTGATACTGTTCCTCTATTTTTATCGTTTTTTGTTTAATTTTTGTTTTCA
TGCTTTCGTTGGAGCTTTGTAGATGTTTCTCGGATCTCTTTCTGCCCAGC
AGACCACGTATCGGATTGGCAACCACTTATATTACTGGGTATAGTTCAGG
CCCGATCGGTTAATGTTAAAAGACACAACATGATCATGTTACTGTAGTCC
TGATCCCTTACTCGAAATACATTCT back to topCoding sequence (CDS) from alignment at P-canaliculata_contig100100:249..823- >mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
ATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATACCGGCAGAG
GAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACCTGGGGTGA
CTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGACCAACCCAA
GGATCCCCTAAGCGACGTCAACTATGGCCGCGCGGGTGAAGGAAGAGGAA
AAGGCGTCCGGATACCGGCAGAGGAATAGAGACACGGAAGAGGCGGACAA
GGTTGAGGTTTCACCTGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGAT
CCGCGTTGATTGGACCAACCCAAGGATCCCCTAAGCGACGTCAACTATGC
TACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGTACCGGATGGCTTG
CGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCCCTCCTTCAATTTT
TTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCTATTTTTATCGTTT
TTTGTTTAAATGCTACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGT
ACCGGATGGCTTGCGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCC
CTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCT
ATTTTTATCGTTTTTTGTTTAA back to top
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