Homology
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match:
A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)
HSP 1 Score: 135 bits (340), Expect = 8.010e-36
Identity = 74/110 (67.27%), Postives = 80/110 (72.73%), Query Frame = 3
Query: 6 MARPSRSNARRSSYKRG-RTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
MARP RS+ARRSSYKRG + SD P R +FVYRERRSF+TYVRPMV D TF++RFRMDYTDFM LADILRPKLQRDEKMGALRNGAI VEF
Sbjct: 1 MARPPRSHARRSSYKRGQKXXXXXXXXXXXXXXXXXXXXSDAPAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEF 110
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match:
A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)
HSP 1 Score: 123 bits (309), Expect = 2.350e-31
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 3
Query: 21 RSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
R+ A R S+ RG+TK++MR L +LL IM+ + D P R FV RERRS++TY +PMV DGTF+ RFRMDYT+F LAD+LRPKL+R+E+MGALRNG I VEF
Sbjct: 3 RAPASRRSWLRGKTKKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEF 106
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match:
A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)
HSP 1 Score: 80.1 bits (196), Expect = 1.580e-15
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 3
Query: 123 DEPTPRYH--FVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
D P+ R V R RR F TY++PM+ D TF RFRM+Y DF L D LRP LQ++EKMG LRNGAI VE+
Sbjct: 39 DPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEY 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 8.01e-36 / Id = 67.27 Expect = 2.35e-31 / Id = 60.58 Expect = 1.58e-15 / Id = 56.94 Sequence A0A6H5K6M2_9PHAE A0A6H5K3F2_9PHAE A0A6H5K540_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 332 Cds size 327 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815573.7259736-UTR-P-canaliculata_contig100057:703..708 1622815573.7259736-UTR-P-canaliculata_contig100057:703..708 Pelvetia canaliculata dioecious UTR P-canaliculata_contig100057 704..708 + 1693494144.7355263-UTR-P-canaliculata_contig100057:703..708 1693494144.7355263-UTR-P-canaliculata_contig100057:703..708 Pelvetia canaliculata dioecious UTR P-canaliculata_contig100057 704..708 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815573.7374036-CDS-P-canaliculata_contig100057:708..1035 1622815573.7374036-CDS-P-canaliculata_contig100057:708..1035 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100057 709..1035 + 1693494144.7639966-CDS-P-canaliculata_contig100057:708..1035 1693494144.7639966-CDS-P-canaliculata_contig100057:708..1035 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100057 709..1035 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100057.56.1
>prot_P-canaliculata_contig100057.56.1 ID=prot_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
MARPSRSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVY back to top mRNA from alignment at P-canaliculata_contig100057:704..1035+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=332bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious)CGACC ATGGCGCGCCCTTCTCGCAGCAATGCTCGAAGGAGCTCGTACAAG
AGAGGTCGGACAAAGCAGCAGATGAGGCTGCTGACGCAGCTATTGCCCAT
CATGTTGGCGGACGAAAACAGCGATGAACCCACCCCTCGCTACCACTTCG
TGTATCGCGAGAGGAGGTCGTTCTTCACATACGTGAGACCCATGGTGGTG
GATGGCACGTTCAAGCAGCGTTTCCGCATGGACTACACCGATTTCATGGA
CTTGGCTGACATTCTACGCCCCAAGCTTCAGAGGGACGAGAAGATGGGGG
CTCTGCGCAACGGAGCTATCTCGGTAGAGTTT back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100057:704..1035+
>mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious) back to top