Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 473 |
| Cds size | 288 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815573.4866178-CDS-P-canaliculata_contig10003:2..89 | 1622815573.4866178-CDS-P-canaliculata_contig10003:2..89 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10003 3..89 + |
| 1693494144.5359037-CDS-P-canaliculata_contig10003:2..89 | 1693494144.5359037-CDS-P-canaliculata_contig10003:2..89 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10003 3..89 + |
| 1622815573.5015633-CDS-P-canaliculata_contig10003:1330..1531 | 1622815573.5015633-CDS-P-canaliculata_contig10003:1330..1531 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10003 1331..1531 + |
| 1693494144.5664365-CDS-P-canaliculata_contig10003:1330..1531 | 1693494144.5664365-CDS-P-canaliculata_contig10003:1330..1531 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig10003 1331..1531 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815573.515418-UTR-P-canaliculata_contig10003:1531..1715 | 1622815573.515418-UTR-P-canaliculata_contig10003:1531..1715 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10003 1532..1715 + |
| 1693494144.5782096-UTR-P-canaliculata_contig10003:1531..1715 | 1693494144.5782096-UTR-P-canaliculata_contig10003:1531..1715 | Pelvetia canaliculata dioecious | UTR | P-canaliculata_contig10003 1532..1715 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10003.52.1 >prot_P-canaliculata_contig10003.52.1 ID=prot_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
DSPPSLLRFTAQQISLLALHTFPTPWRRKFKKTTSPPLSNNPLEEAVYES
SFATGVDVGRTIPNRGETPLRTVYHATSVEGEYQARDTGHGSQRY* back to topmRNA from alignment at P-canaliculata_contig10003:3..1715+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig10003.52.1 ID=mRNA_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-canaliculata_contig10003:3..1715+ (Pelvetia canaliculata dioecious)
GACTCTCCGCCGAGTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCT
AGCGCTGCACACATTCCCTACTCCGTGGAGAAGGAAGGTGACGTGAACAT
CCGAAAAAAACGTTTATTAGAAGGGAGAGGATGACCGAGACATAAATCAG
TGATAAAATGAAAAACGTGAAAGACGGCGTGCATTATTCATAGATCTATG
CTACTGCATTATTAAACGTGTCATAGTCATATAACTGTCGTCGCCGTGAT
CATATAGGCACAGTACAAAATGTTTATGGCCTCTAAAACCTTCTCCATCC
TCACAAGTGCACCATCATCCCAGAACATCCTCCGTGAACGTTCGCCACAC
AGCTATTAATACTTCACACCCCTCCTTGTGTACGGAGGGTTCGACGAAAG
TTTTCGTGATTATCGTGCTACCACGTAGTACGTACTGAAGTGCAGTCCAT
CCTTGTTTACTACAGTATTCCGTACATGCATAAATTTGACGCTGCGTGTG
AGTAACCTCCGTACTGCACCATACGGCTATCGTACATTGCACCGCTGCAT
ACACTGCTTGTACCCCAGAGACAATCAAGAGCCGAGGAAGAGTCGAGAAG
ACACGATAACTATGACGGTCTTTTGAAGATACACACATACCGCTAAGAGT
AGTATAGATCTATAGTAACACCAACACCAGCCCCTGCCCTCACGAATAAG
GCGACGAGATGTGACATCAGATATCGGGGCCACACTGACTGTACCAAATA
GCTCTATGCTTGTATTGTAGTAACGTTGCGTAATCGACGCGAAAACACTT
TTGCTCGACGGCGATACAAAGGCACTATTTAGTACTACGCTGGGATTAGT
TTTTTGTGTTGCGGCGTCCACAAGGGATGCGTGTTTTCATCGACTTCGTA
AAGCAGTATATTGGTGAGATCGGCTCTCGATTTTGAAATAGACTCCCAGT
GTGTTACCGGAACCCGGTCTGAGAGAGCCAAACCAATTAATGCCTGAAGG
GTTTAATGTCAACTTTTTGAAGGCGCCATCAAATTTGAGCGCATCTTACC
CAGGCGGTAATCAAGATATATACACCATATTTATCTGGGTCTAAGAAAGT
CTGTCAGTTCCTCGACCAATGGTGCGGTTATTTTTATGCCATTATACATG
TTTTCATGTGCCTTGCTTGGTGTTTGTTTTTCCAAGTCGCGCAATAAAAT
TCGCCATTGAAGCGCTTGTACGTACATACATACCGATACCGTGCTTTGCT
TTTTACCATTCTTTGTCTTGGTGTCGCCGCCGATGCTGTATTTTTCTCAT
TAAAACTGTCGCCATCATCAATAAATAGTTCAAGAAGACGACGTCACCCC
CCTTGAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCC
ACTGGGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACT
ACGTACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGG
ACACAGGGCATGGATCACAGAGATATTAACAAAGCGCCAAGAGCAGAGAA
GACATCGCCGGTAGCGCATCATCATCAGTAATAATGGGGCCTCAACGTTT
CGGGGGCGGCAATGATATATTGAGCGGGCGTTGCCAACAATGCATCTGAT
CGATTCACTTAGTAGAACCGTTACATAGGGAGTGGACCTCGATATATGTT
TGTTACTTCACAG back to topCoding sequence (CDS) from alignment at P-canaliculata_contig10003:3..1715+ >mRNA_P-canaliculata_contig10003.52.1 ID=mRNA_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig10003:3..1715+ (Pelvetia canaliculata dioecious)
GACTCTCCGCCGAGTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCT
AGCGCTGCACACATTCCCTACTCCGTGGAGAAGGAAGGACTCTCCGCCGA
GTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCTAGCGCTGCACACA
TTCCCTACTCCGTGGAGAAGGAAGTTCAAGAAGACGACGTCACCCCCCTT
GAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCCACTG
GGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACTACGT
ACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGGACAC
AGGGCATGGATCACAGAGATATTAATTCAAGAAGACGACGTCACCCCCCT
TGAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCCACT
GGGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACTACG
TACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGGACA
CAGGGCATGGATCACAGAGATATTAA back to top
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