mRNA_M-pyrifera_M_contig100.5.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100.5.1
Unique NamemRNA_M-pyrifera_M_contig100.5.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig100.5.1 vs. uniprot
Match: D7FR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR75_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 2.320e-43
Identity = 101/296 (34.12%), Postives = 146/296 (49.32%), Query Frame = 1 
Query:    1 LLVSVSVIGESGAGRLPDFPWSDNELKVHAGYYTDGGKYLGGIPGYNNMY-EMFDCTEYLYDFSYGNTGGIAKVCKAWVANEVSSTAYDVARCSCE--SFQDKEYCDMWTCSQIAVYTPVSCSASDAYSGKXXXXWVCLDTDSINDDXXXXXXXTEEHTCVTTSPTADFCVAWTGVIDTADSLGLSTCSCVQGSTANSVCSHWECQMRGMDKCSSAGSGWCDIGYAVGVGGLFGSLGAVFTA--VGLFRFLKNEPPLCRWSWL-DYFLGFAWMAVWSIGVVIWGGEDGATYVTLWW 870
            +L S ++  +     LPDFP +  +++V AGYY+  GKYLGG+P  + +  E++DCT++ Y     NT   A  C  W A+E     + +  C C+                + + YT   C  + A  G XXXX  C    S            E++ C   SP+  +C AW G +  +D   + +C C+     + VCS WEC+  G+  CSSAG+ WCD+G ++GVGG  G LG +     +GL   + +E      + L    LG  W   WS GVVIWGGE GATYV + W
Sbjct:   40 VLFSTAIFTDVARAELPDFPMTLADMEVLAGYYSADGKYLGGMPKAHTLSREIYDCTDFQYS-EPNNTASNATYCTGWSADESYGGGFQLGDCECKFSXXXXXXXXXXXXXQENSDYTLCQCDDTGAAEGLXXXXXSCKQICS------GGRAEFEDYRCQRPSPSGHYCEAWNGNVTASDEFEIVSCECLANWHGDQVCSFWECEELGLSTCSSAGASWCDLGVSIGVGGGIGLLGVLVICYGIGLVGRIDSEGQSDTTAGLMGIALGTVWCLSWSSGVVIWGGEAGATYVGIMW 328
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BLAST of mRNA_M-pyrifera_M_contig100.5.1 vs. uniprot
Match: D7G428_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G428_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 2.270e-40
Identity = 102/320 (31.87%), Postives = 146/320 (45.62%), Query Frame = 1 
Query:    4 LVSVSVIGESGAGRLPDFPWSDNELKVHAGYYTDGGKYLGGIPGYNNMY-EMFDCTEYLYDFSYGN------TGGI--AKVCKAWVANEVSSTAYDVARCSCESFQDKEYCDMWTCSQIAVYTPVSCSAS-----------------DAYSGKXXXXWVCLDTDSINDDXXXXXXXTEEHTCVTTSPTADFCVAWTGVIDTADSLGLSTCSCVQGSTANSVCSHWECQMRGMDKCSSAGSGWCDIGYAVGVGGLFGSLGAV-----FTAVGLFRFLKNEPPLCRWSWLDYFLGFAWMAVWSIGVVIWGGEDGATYVTLWW 870
            LV  S +G  G G  PD+P +  ++KV AGYYT+ GKYLGGIP  + +  E+++C    Y +  GN      T G   A  C  W A+E +   +    C C S  ++ YC  WTC+Q+      + S S                 D  SG     W C   DS   +        EE+ C              G +  +D + + TC CV   + + +CS+WEC+  G+  C+S   GWCD+G ++G+ G+FG  GA+     F + G F            + +    G  W  VWS+GVVIWGG DG  YV + W
Sbjct:   40 LVLSSSLGIVG-GVYPDYPMTFADMKVLAGYYTEDGKYLGGIPKADPVSKEIYECAADTYFYPSGNDTVTDSTDGKDEATACMEWRADESAGGVFQKGTCECTSIDNENYCSAWTCNQVKEEEDCNSSGSNCVVSTNTDAVLCQCDLDVPSGLYCDSWSCKQIDSDGREEF------EEYHCQREXXXXXXXXXXNGNVTASDEVEVVTCECVATWSGDRLCSYWECEEIGLSSCNST-RGWCDLGLSIGLAGVFGLAGALAAGFSFASFGCFERSTTGMRAVVCTGVG---GILWCMVWSVGVVIWGGLDGVVYVGIMW 348
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FR75_ECTSI2.320e-4334.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G428_ECTSI2.270e-4031.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100contigM-pyrifera_M_contig100:202..1128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size870
Cds size870
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815494.3507943-CDS-M-pyrifera_M_contig100:201..5701622815494.3507943-CDS-M-pyrifera_M_contig100:201..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100 202..570 +
1692277436.6850874-CDS-M-pyrifera_M_contig100:201..5701692277436.6850874-CDS-M-pyrifera_M_contig100:201..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100 202..570 +
1622815494.3653796-CDS-M-pyrifera_M_contig100:627..11281622815494.3653796-CDS-M-pyrifera_M_contig100:627..1128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100 628..1128 +
1692277436.7470176-CDS-M-pyrifera_M_contig100:627..11281692277436.7470176-CDS-M-pyrifera_M_contig100:627..1128Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100 628..1128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100.5.1prot_M-pyrifera_M_contig100.5.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100 202..1128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100.5.1

>prot_M-pyrifera_M_contig100.5.1 ID=prot_M-pyrifera_M_contig100.5.1|Name=mRNA_M-pyrifera_M_contig100.5.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=290bp
LLVSVSVIGESGAGRLPDFPWSDNELKVHAGYYTDGGKYLGGIPGYNNMY
EMFDCTEYLYDFSYGNTGGIAKVCKAWVANEVSSTAYDVARCSCESFQDK
EYCDMWTCSQIAVYTPVSCSASDAYSGKFCSSWVCLDTDSINDDDGGGVV
VTEEHTCVTTSPTADFCVAWTGVIDTADSLGLSTCSCVQGSTANSVCSHW
ECQMRGMDKCSSAGSGWCDIGYAVGVGGLFGSLGAVFTAVGLFRFLKNEP
PLCRWSWLDYFLGFAWMAVWSIGVVIWGGEDGATYVTLWW
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mRNA from alignment at M-pyrifera_M_contig100:202..1128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100.5.1 ID=mRNA_M-pyrifera_M_contig100.5.1|Name=mRNA_M-pyrifera_M_contig100.5.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=927bp|location=Sequence derived from alignment at M-pyrifera_M_contig100:202..1128+ (Macrocystis pyrifera P11B4 male)
CTCCTCGTCAGTGTGTCGGTCATTGGCGAATCGGGCGCCGGCAGGTTACC
TGATTTTCCTTGGAGCGACAACGAACTCAAGGTCCACGCCGGCTACTACA
CGGACGGCGGCAAGTACCTCGGGGGGATTCCCGGCTACAACAACATGTAC
GAGATGTTCGACTGCACGGAGTATCTGTACGATTTCAGCTACGGCAACAC
AGGCGGGATTGCGAAGGTCTGCAAGGCCTGGGTCGCGAACGAGGTCAGCT
CGACCGCGTACGACGTCGCCAGGTGTTCTTGCGAGTCCTTCCAGGACAAG
GAGTACTGCGACATGTGGACCTGCAGCCAGATCGCCGTGTACACCCCCGT
CAGCTGCTCCGCCAGCGATGTATTCTGCTACGTCGAACGCGAAGTGGGAA
CCAGGCAGTGCATGTGCGAAATAGAGGCGTACTCCGGGAAGTTCTGCTCT
TCTTGGGTGTGCCTAGACACGGATTCTATCAACGATGACGATGGCGGCGG
GGTTGTGGTCACTGAGGAACATACGTGCGTAACCACCTCGCCGACGGCCG
ACTTCTGTGTCGCGTGGACCGGGGTGATCGACACGGCGGACTCATTGGGG
CTCTCCACTTGCTCGTGTGTCCAGGGGTCGACTGCGAACAGCGTTTGCTC
CCATTGGGAATGCCAGATGCGCGGGATGGACAAGTGCTCGAGCGCCGGGT
CCGGTTGGTGCGACATAGGATACGCTGTCGGGGTCGGGGGGCTGTTTGGG
TCTCTCGGAGCCGTGTTCACGGCCGTGGGACTCTTTCGGTTCTTGAAGAA
TGAGCCACCCCTTTGTCGGTGGTCTTGGTTGGATTACTTTTTGGGATTCG
CGTGGATGGCGGTGTGGTCCATCGGAGTTGTCATTTGGGGTGGTGAGGAC
GGGGCCACCTACGTTACGCTGTGGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100:202..1128+

>mRNA_M-pyrifera_M_contig100.5.1 ID=mRNA_M-pyrifera_M_contig100.5.1|Name=mRNA_M-pyrifera_M_contig100.5.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1740bp|location=Sequence derived from alignment at M-pyrifera_M_contig100:202..1128+ (Macrocystis pyrifera P11B4 male)
CTCCTCGTCAGTGTGTCGGTCATTGGCGAATCGGGCGCCGGCAGGTTACC
TGATTTTCCTTGGAGCGACAACGAACTCAAGGTCCACGCCGGCTACTACA
CGGACGGCGGCAAGTACCTCGGGGGGATTCCCGGCTACAACAACATGTAC
GAGATGTTCGACTGCACGGAGTATCTGTACGATTTCAGCTACGGCAACAC
AGGCGGGATTGCGAAGGTCTGCAAGGCCTGGGTCGCGAACGAGGTCAGCT
CGACCGCGTACGACGTCGCCAGGTGTTCTTGCGAGTCCTTCCAGGACAAG
GAGTACTGCGACATGTGGACCTGCAGCCAGATCGCCGTGTACACCCCCGT
CAGCTGCTCCGCCAGCGATCTCCTCGTCAGTGTGTCGGTCATTGGCGAAT
CGGGCGCCGGCAGGTTACCTGATTTTCCTTGGAGCGACAACGAACTCAAG
GTCCACGCCGGCTACTACACGGACGGCGGCAAGTACCTCGGGGGGATTCC
CGGCTACAACAACATGTACGAGATGTTCGACTGCACGGAGTATCTGTACG
ATTTCAGCTACGGCAACACAGGCGGGATTGCGAAGGTCTGCAAGGCCTGG
GTCGCGAACGAGGTCAGCTCGACCGCGTACGACGTCGCCAGGTGTTCTTG
CGAGTCCTTCCAGGACAAGGAGTACTGCGACATGTGGACCTGCAGCCAGA
TCGCCGTGTACACCCCCGTCAGCTGCTCCGCCAGCGATGCGTACTCCGGG
AAGTTCTGCTCTTCTTGGGTGTGCCTAGACACGGATTCTATCAACGATGA
CGATGGCGGCGGGGTTGTGGTCACTGAGGAACATACGTGCGTAACCACCT
CGCCGACGGCCGACTTCTGTGTCGCGTGGACCGGGGTGATCGACACGGCG
GACTCATTGGGGCTCTCCACTTGCTCGTGTGTCCAGGGGTCGACTGCGAA
CAGCGTTTGCTCCCATTGGGAATGCCAGATGCGCGGGATGGACAAGTGCT
CGAGCGCCGGGTCCGGTTGGTGCGACATAGGATACGCTGTCGGGGTCGGG
GGGCTGTTTGGGTCTCTCGGAGCCGTGTTCACGGCCGTGGGACTCTTTCG
GTTCTTGAAGAATGAGCCACCCCTTTGTCGGTGGTCTTGGTTGGATTACT
TTTTGGGATTCGCGTGGATGGCGGTGTGGTCCATCGGAGTTGTCATTTGG
GGTGGTGAGGACGGGGCCACCTACGTTACGCTGTGGTGGGCGTACTCCGG
GAAGTTCTGCTCTTCTTGGGTGTGCCTAGACACGGATTCTATCAACGATG
ACGATGGCGGCGGGGTTGTGGTCACTGAGGAACATACGTGCGTAACCACC
TCGCCGACGGCCGACTTCTGTGTCGCGTGGACCGGGGTGATCGACACGGC
GGACTCATTGGGGCTCTCCACTTGCTCGTGTGTCCAGGGGTCGACTGCGA
ACAGCGTTTGCTCCCATTGGGAATGCCAGATGCGCGGGATGGACAAGTGC
TCGAGCGCCGGGTCCGGTTGGTGCGACATAGGATACGCTGTCGGGGTCGG
GGGGCTGTTTGGGTCTCTCGGAGCCGTGTTCACGGCCGTGGGACTCTTTC
GGTTCTTGAAGAATGAGCCACCCCTTTGTCGGTGGTCTTGGTTGGATTAC
TTTTTGGGATTCGCGTGGATGGCGGTGTGGTCCATCGGAGTTGTCATTTG
GGGTGGTGAGGACGGGGCCACCTACGTTACGCTGTGGTGG
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