mRNA_M-pyrifera_M_contig100218.50.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100218.50.1
Unique NamemRNA_M-pyrifera_M_contig100218.50.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: D8M8Z2_BLAHO (60S ribosomal protein L13 n=2 Tax=Blastocystis hominis TaxID=12968 RepID=D8M8Z2_BLAHO)

HSP 1 Score: 85.5 bits (210), Expect = 5.340e-19
Identity = 57/113 (50.44%), Postives = 71/113 (62.83%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRKKPTSVDLPAQLAGPILPIENAKLA-SVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAE 336
            G++  EA TIGIAVDHRR NR  E  QANVERLNAYK++L++ PR +  +     QL G ILPIE  K+A  V+F  VT EL   S    LR A+   H +G+  K+A  AAE
Sbjct:   18 GINPREALTIGIAVDHRRVNRCVESLQANVERLNAYKSKLILFPRGEMAAAT---QLNGTILPIE--KVAPKVEFMEVTPELKKRSAFMGLRQALCDAHNFGKRAKRAAKAAE 125          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A7R9TYK1_9VIRI (60S ribosomal protein L13 n=2 Tax=Viridiplantae TaxID=33090 RepID=A0A7R9TYK1_9VIRI)

HSP 1 Score: 86.3 bits (212), Expect = 2.820e-18
Identity = 61/128 (47.66%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPR--KKPTSVDLPA-------QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAELKAAKKK 357
            G+    A+TIGIAVDHRR+N+S E  QANV RL  Y ++LV+ PR  K P + D  A       QL G ILP+   K A V+FAPVTDEL A S   +LR  +  K   G   KKA++ A  +A KKK
Sbjct:  103 GIGAKYAQTIGIAVDHRRRNKSLETMQANVNRLKTYMSKLVLFPRNAKAPKAGDATANEVATAEQLEGKILPLAKEKFA-VEFAPVTDELKAASAYGKLRLEMMNKRQVGPRFKKAQEEAAKEAEKKK 229          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A8J5LB35_ZINOF (Uncharacterized protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LB35_ZINOF)

HSP 1 Score: 84.7 bits (208), Expect = 6.920e-18
Identity = 55/119 (46.22%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRKK-------PTSVDLPA--QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDA 330
            G+S+  A TIGIAVDHRRKNRS EG QANV+RL  YKA+LV+ PR+         T+ +L    Q+ GP+LPI   K  SV+   VTDE+ + +   +LR     +   G  LKKA +A
Sbjct:   84 GISKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRAHKFKNGDSTAEELATATQVQGPVLPIVRNKPRSVELVKVTDEMKSFAAYAKLRVERMNQRQVGARLKKAAEA 202          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A7R9WAC9_9STRA (60S ribosomal protein L13 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WAC9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.550e-18
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPR---KKPTSVDLPA-------QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAE 336
            G+S+  ARTIGIAVDHRR N+S    Q NV+RLNAYKA+LVV PR    KP + D          QL GP+ PI  AK  S +F  +TD+L A +  + LR     +   G  +K+AK+AAE
Sbjct:   84 GISKRVARTIGIAVDHRRSNKSTATLQENVQRLNAYKAKLVVFPRGSNAKPKTGDASVEETSAATQLTGPLFPI-TAKPVSTEFVALTDDLKAKNAYRTLRIERCNRRMNGLRIKRAKEAAE 204          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A1X2IR22_9FUNG (60S ribosomal protein L13 n=7 Tax=Absidia TaxID=4828 RepID=A0A1X2IR22_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 1.330e-17
Identity = 57/126 (45.24%), Postives = 74/126 (58.73%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRK--KPTSVDLPA-------QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAELKAAK 351
            GL+   ART+GIAVDHRR+NRS+E  + NV+RL AY+A+L+V PRK   P   D  A       Q  GPILPI+    A  +   +T E  AG+   +LR A   K T G   K+A+D AE +A K
Sbjct:   85 GLTPKYARTVGIAVDHRRRNRSQESLELNVQRLKAYQAKLIVFPRKAGSPKKGDSEAAEVASAVQFKGPILPIQQVA-AGPEARAITAEEKAGNAYMKLRYARSAKRTLGAREKRARDKAEEEANK 209          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A6S7FL07_PARCT (60S ribosomal protein L13 n=2 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7FL07_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 1.450e-17
Identity = 60/128 (46.88%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRK--KPTSVDLPA-------QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAELKAAKKK 357
            G+SR  A TIGIAVDHRRKNRS+E  QANV+RL  YK++L++ PRK  KP   D  A       QL G +LPI+   +  +    +TDE    SV   +R A   K   G   K+AKD AE  A KKK
Sbjct:   85 GISRKVAPTIGIAVDHRRKNRSQESLQANVQRLKEYKSKLIIFPRKASKPKQGDSEASELEMVKQLQGDVLPIQRMTMP-IKARQITDEERNVSVFTTMRMARANKRLLGIRAKRAKDKAEEAALKKK 211          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A1D1YWJ6_9ARAE (60S ribosomal protein L13 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YWJ6_9ARAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.740e-17
Identity = 53/120 (44.17%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRKK---------PTSVDLPAQLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAA 333
            G+ +  AR IGIAVDHRRKNRS EG QANV+RL  YKA+LV+ PR+          P  +   +Q+ G  +PI   K  SVD   VTDE+ + +   ++R     K  +G  LKKA++AA
Sbjct:   84 GILQKVARKIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVIFPRRPHKFKAGDSAPEDLAAVSQVQGEFMPIVREK-PSVDLVKVTDEMKSFNAYAKIRVERMNKRHFGARLKKAEEAA 202          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: D8QUC7_SELML (60S ribosomal protein L13 n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QUC7_SELML)

HSP 1 Score: 82.8 bits (203), Expect = 3.810e-17
Identity = 54/119 (45.38%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRK---------KPTSVDLPAQLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDA 330
            G+S+  ARTIGIA+DHRRKNRS E  Q NV+RLN YK +L+V PRK         +P  +    Q  GP+LPI   K   V    VTDE+ A    Q+LR     K   G   KKA +A
Sbjct:   84 GISKKLARTIGIALDHRRKNRSLESLQTNVQRLNTYKTKLIVFPRKAKKTKMGDSQPEVLSTATQFQGPVLPIVPKK-PEVGIVTVTDEMKAVKAYQKLRIEQTNKRLVGIRAKKAAEA 201          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A1C7N135_9FUNG (60S ribosomal protein L13 n=3 Tax=Mucorineae TaxID=1344963 RepID=A0A1C7N135_9FUNG)

HSP 1 Score: 82.8 bits (203), Expect = 4.040e-17
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRK---------KPTSVDLPAQLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDAAELKAAKKK 357
            G+ R EARTIGIAVD RR+NRS E  + NV+RL AYKA+L+V PRK         +PT V    QL  P+ P+E    A+ +   +T E    +   +LR A     T G   K+A+D AE +A KKK
Sbjct:   85 GIRRKEARTIGIAVDFRRRNRSNESLELNVQRLKAYKAKLIVFPRKATSPKKGDSEPTEVATAVQLRTPLFPVEQVA-AAPEARAITAEEKNVNAYMKLRYARSAARTLGAREKRARDKAEEEANKKK 211          
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Match: A0A498IM06_MALDO (60S ribosomal protein L13 n=7 Tax=Maleae TaxID=721813 RepID=A0A498IM06_MALDO)

HSP 1 Score: 82.4 bits (202), Expect = 5.260e-17
Identity = 59/119 (49.58%), Postives = 70/119 (58.82%), Query Frame = 1
Query:    1 GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPR--KKPTSVDLPA-------QLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTWGRELKKAKDA 330
            G+ +  A TIGIAVDHRRKNRS EG QANV+RL  YKA+LVV PR  K+  + D PA       QL GP LPI   K  +V+   VTDEL +     +LR     K   G  LKKA +A
Sbjct:   84 GIPKKLAPTIGIAVDHRRKNRSLEGLQANVQRLKTYKAKLVVFPRRAKQFKAGDSPAEELANATQLHGPYLPIAREK-PTVELVKVTDELKSFKAYDKLRVERMNKRHVGARLKKAAEA 201          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100218.50.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8M8Z2_BLAHO5.340e-1950.4460S ribosomal protein L13 n=2 Tax=Blastocystis hom... [more]
A0A7R9TYK1_9VIRI2.820e-1847.6660S ribosomal protein L13 n=2 Tax=Viridiplantae Ta... [more]
A0A8J5LB35_ZINOF6.920e-1846.22Uncharacterized protein n=2 Tax=Zingiber officinal... [more]
A0A7R9WAC9_9STRA9.550e-1846.7260S ribosomal protein L13 n=1 Tax=Pseudictyota dub... [more]
A0A1X2IR22_9FUNG1.330e-1745.2460S ribosomal protein L13 n=7 Tax=Absidia TaxID=48... [more]
A0A6S7FL07_PARCT1.450e-1746.8860S ribosomal protein L13 n=2 Tax=Alcyonacea TaxID... [more]
A0A1D1YWJ6_9ARAE3.740e-1744.1760S ribosomal protein L13 n=1 Tax=Anthurium amnico... [more]
D8QUC7_SELML3.810e-1745.3860S ribosomal protein L13 n=3 Tax=Selaginella moel... [more]
A0A1C7N135_9FUNG4.040e-1743.7560S ribosomal protein L13 n=3 Tax=Mucorineae TaxID... [more]
A0A498IM06_MALDO5.260e-1749.5860S ribosomal protein L13 n=7 Tax=Maleae TaxID=721... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100218contigM-pyrifera_M_contig100218:320..682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score86.3
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog225117.XP_009348808.1
Preferred nameRPL13
KEGG koko:K02873
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eL13 family
EggNOG OGs37NMZ@33090,3G8XH@35493,4JI40@91835,COG4352@1,KOG3295@2759
Ec32 ortholog descriptionRibosomal protein L13e
Ec32 orthologEc-22_002060.1
COG Functional cat.J
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815497.5170724-CDS-M-pyrifera_M_contig100218:319..6821622815497.5170724-CDS-M-pyrifera_M_contig100218:319..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100218 320..682 -
1692277438.5563056-CDS-M-pyrifera_M_contig100218:319..6821692277438.5563056-CDS-M-pyrifera_M_contig100218:319..682Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100218 320..682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100218.50.1prot_M-pyrifera_M_contig100218.50.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100218 320..682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100218.50.1

>prot_M-pyrifera_M_contig100218.50.1 ID=prot_M-pyrifera_M_contig100218.50.1|Name=mRNA_M-pyrifera_M_contig100218.50.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
GLSRTEARTIGIAVDHRRKNRSEEGFQANVERLNAYKARLVVAPRKKPTS
VDLPAQLAGPILPIENAKLASVDFAPVTDELTAGSVAQRLRDAVKLKHTW
GRELKKAKDAAELKAAKKKK*
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mRNA from alignment at M-pyrifera_M_contig100218:320..682-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100218.50.1 ID=mRNA_M-pyrifera_M_contig100218.50.1|Name=mRNA_M-pyrifera_M_contig100218.50.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig100218:320..682- (Macrocystis pyrifera P11B4 male)
GGTCTCTCCCGTACTGAAGCCCGCACCATTGGCATCGCTGTGGACCATCG CCGCAAGAACCGATCTGAGGAAGGCTTCCAGGCCAACGTGGAGCGCCTCA ACGCCTACAAGGCGCGTCTCGTGGTGGCCCCTCGCAAGAAGCCAACCAGC GTCGACCTCCCAGCGCAACTCGCAGGGCCAATCCTCCCCATCGAAAACGC AAAACTCGCATCTGTCGACTTTGCTCCAGTCACCGACGAACTCACCGCCG GGTCAGTCGCCCAACGGCTCCGGGACGCCGTCAAGCTCAAGCACACCTGG GGAAGAGAGCTCAAGAAGGCAAAGGACGCCGCAGAGCTCAAGGCCGCAAA GAAGAAGAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100218:320..682-

>mRNA_M-pyrifera_M_contig100218.50.1 ID=mRNA_M-pyrifera_M_contig100218.50.1|Name=mRNA_M-pyrifera_M_contig100218.50.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig100218:320..682- (Macrocystis pyrifera P11B4 male)
GGTCTCTCCCGTACTGAAGCCCGCACCATTGGCATCGCTGTGGACCATCG
CCGCAAGAACCGATCTGAGGAAGGCTTCCAGGCCAACGTGGAGCGCCTCA
ACGCCTACAAGGCGCGTCTCGTGGTGGCCCCTCGCAAGAAGCCAACCAGC
GTCGACCTCCCAGCGCAACTCGCAGGGCCAATCCTCCCCATCGAAAACGC
AAAACTCGCATCTGTCGACTTTGCTCCAGTCACCGACGAACTCACCGCCG
GGTCAGTCGCCCAACGGCTCCGGGACGCCGTCAAGCTCAAGCACACCTGG
GGAAGAGAGCTCAAGAAGGCAAAGGACGCCGCAGAGCTCAAGGCCGCAAA
GAAGAAGAAGTAAGGTCTCTCCCGTACTGAAGCCCGCACCATTGGCATCG
CTGTGGACCATCGCCGCAAGAACCGATCTGAGGAAGGCTTCCAGGCCAAC
GTGGAGCGCCTCAACGCCTACAAGGCGCGTCTCGTGGTGGCCCCTCGCAA
GAAGCCAACCAGCGTCGACCTCCCAGCGCAACTCGCAGGGCCAATCCTCC
CCATCGAAAACGCAAAACTCGCATCTGTCGACTTTGCTCCAGTCACCGAC
GAACTCACCGCCGGGTCAGTCGCCCAACGGCTCCGGGACGCCGTCAAGCT
CAAGCACACCTGGGGAAGAGAGCTCAAGAAGGCAAAGGACGCCGCAGAGC
TCAAGGCCGCAAAGAAGAAGAAGTAA
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