mRNA_M-pyrifera_M_contig124474.4981.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: UPI001AE033A2 (ribonuclease HII n=1 Tax=Sagittula salina TaxID=2820268 RepID=UPI001AE033A2) HSP 1 Score: 58.2 bits (139), Expect = 5.630e-9 Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAV 138
+ +EE +W RGV RVCG DE GRGPLAGPVVAA+V + +RE++
Sbjct: 3 MTFEEALWGRGVGRVCGVDEVGRGPLAGPVVAAAVVL-NRESI 44
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A849XZ74_9BACT (Ribonuclease HII n=1 Tax=Verrucomicrobiae bacterium TaxID=2499141 RepID=A0A849XZ74_9BACT) HSP 1 Score: 58.2 bits (139), Expect = 6.850e-9 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 4 SGLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
+ L +E +WARG ARVCG DEAGRGPLAGPVVAA+V +
Sbjct: 9 ASLDFERDLWARGFARVCGIDEAGRGPLAGPVVAAAVVL 47
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A7X4AD53_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4AD53_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 1.200e-8 Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAV 138
L YE +WARGVARV G DE GRGPLAGPVVAA+V + + A+
Sbjct: 2 LDYERDLWARGVARVAGVDEVGRGPLAGPVVAAAVILAEGVAI 44
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A4Y8IAY4_9BACT (Multifunctional fusion protein n=1 Tax=Candidatus Marinimicrobia bacterium MT.SAG.4 TaxID=2552981 RepID=A0A4Y8IAY4_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 4.510e-8 Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDR 129
L YE R+WA G+ R+ G DEAGRGPLAGPVVAA+V ++ +
Sbjct: 7 LYYENRLWASGIKRIAGIDEAGRGPLAGPVVAAAVILDQQ 46
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A849GU62_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A849GU62_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 4.690e-8 Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
L YEER W+RG + V G DEAGRGPLAGPVVAA+V +
Sbjct: 11 LEYEERFWSRGFSHVAGVDEAGRGPLAGPVVAAAVLL 47
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A651HR67_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651HR67_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 4.690e-8 Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query: 7 GLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIE 123
GL YEE W RG+ V G DE GRGPLAGPVVAA+V +E
Sbjct: 5 GLEYEEAFWRRGITLVAGVDEVGRGPLAGPVVAAAVVLE 43
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A6N8V659_9BACT (Ribonuclease HII n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N8V659_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 5.360e-8 Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIED 126
L YE +W RG+ARV G DE GRGPLAGPVVAA+V + +
Sbjct: 18 LEYERHLWGRGIARVAGVDEVGRGPLAGPVVAAAVVLAE 56
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A848XKG9_9BACT (Ribonuclease (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XKG9_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 6.180e-8 Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCI 120
L YE W RGV+RV G DE GRGPLAGPVVAA+V +
Sbjct: 10 LEYERGFWGRGVSRVAGVDEVGRGPLAGPVVAAAVIL 46
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A0F2NEN6_9FIRM (Ribonuclease HII n=1 Tax=Peptococcaceae bacterium BRH_c4a TaxID=1629716 RepID=A0A0F2NEN6_9FIRM) HSP 1 Score: 55.8 bits (133), Expect = 7.100e-8 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDR 129
L YE+R+WA GV V G DEAGRGPLAGPVVAA+V + R
Sbjct: 60 LCYEKRLWASGVELVAGVDEAGRGPLAGPVVAAAVILPPR 99
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Match: A0A3M2B9K6_9BACT (Ribonuclease HII n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3M2B9K6_9BACT) HSP 1 Score: 55.5 bits (132), Expect = 7.260e-8 Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 10 LAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIED 126
L YE R W+RG+ RV G DEAGRGPLAGPVVAA+V + +
Sbjct: 22 LDYERRCWSRGLFRVAGVDEAGRGPLAGPVVAAAVVLPE 60 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124474.4981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124474.4981.1 >prot_M-pyrifera_M_contig124474.4981.1 ID=prot_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp LSGLAYEERVWARGVARVCGCDEAGRGPLAGPVVAASVCIEDREAVLPLback to top mRNA from alignment at M-pyrifera_M_contig124474:3..149- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124474.4981.1 ID=mRNA_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=147bp|location=Sequence derived from alignment at M-pyrifera_M_contig124474:3..149- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124474:3..149- >mRNA_M-pyrifera_M_contig124474.4981.1 ID=mRNA_M-pyrifera_M_contig124474.4981.1|Name=mRNA_M-pyrifera_M_contig124474.4981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig124474:3..149- (Macrocystis pyrifera P11B4 male)back to top |