mRNA_M-pyrifera_M_contig124467.4976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124467.4976.1
Unique NamemRNA_M-pyrifera_M_contig124467.4976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A2E7KEY5_9PLAN (HlyD_D23 domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEY5_9PLAN)

HSP 1 Score: 242 bits (618), Expect = 4.200e-74
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = 1
Query:    1 QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRLEE 369
            QHELEHFLN+P NT+LAHLPHH AIPCPVQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVISLAS+QSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRLEE
Sbjct:  596 QHELEHFLNTPANTVLAHLPHHSAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVISLASDQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRLEE 718          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A6I6AKG5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AKG5_9PLAN)

HSP 1 Score: 177 bits (449), Expect = 9.830e-56
Identity = 86/92 (93.48%), Postives = 92/92 (100.00%), Query Frame = 1
Query:   94 VVPRASVTLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRLEE 369
            +VPRASV+LTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLV+SLAS+QSLELYAGQRIDVTCRPQH+SVGRHLY+QVSSWLNKRLEE
Sbjct:    1 MVPRASVSLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVVSLASDQSLELYAGQRIDVTCRPQHHSVGRHLYHQVSSWLNKRLEE 92          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A518AA63_9PLAN (Peptidase family M50 n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AA63_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 1.610e-43
Identity = 73/122 (59.84%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    1 QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRLE 366
            Q ELEHFLN+P + ++AH+P  P + CPV+KVVPRA+VTL+HPALAAA GG LPVKP +S     EYELL+PRFNL++S+A+++S  L+AGQR+DVTCRP  YS+G+HLY+  ++W+ +RL+
Sbjct:  590 QDELEHFLNTPDHHVMAHVPQFPLLSCPVKKVVPRATVTLSHPALAAACGGPLPVKPIASADTKSEYELLEPRFNLIVSIAADKSEVLHAGQRVDVTCRPSDYSIGQHLYHSFTNWMYQRLD 711          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A3C0APK6_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0APK6_9PLAN)

HSP 1 Score: 139 bits (351), Expect = 8.930e-40
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKP-ASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRL 363
            Q++LEHFL + G  +  H+PH P + C ++KVVPRASVTL HPALAA+YGG LPVKP AS+ +   E+ELL PRFNL++SLA+  S EL AGQR+ VT RP  YS G++L   VS W + +L
Sbjct:   47 QNDLEHFLKTSGQPVTVHIPHKPLLSCAIEKVVPRASVTLNHPALAASYGGDLPVKPVASTSETQSEFELLKPRFNLIVSLAAHSSSELNAGQRVAVTSRPTGYSTGQYLKQSVSEWFHNKL 168          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A2E2CAM8_9PLAN (HlyD_D23 domain-containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CAM8_9PLAN)

HSP 1 Score: 139 bits (351), Expect = 4.990e-36
Identity = 69/122 (56.56%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    1 QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKP-ASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRL 363
            Q++LEHFL + G  +  H+PH P + C ++KVVPRASVTL HPALAA+YGG LPVKP AS+ +   E+ELL PRFNL++SLA+  S EL AGQR+ VT RP  YS G++L   VS W + +L
Sbjct:  590 QNDLEHFLKTSGQPVTVHIPHKPLLSCAIEKVVPRASVTLNHPALAASYGGDLPVKPVASTSETQSEFELLKPRFNLIVSLAAHSSSELNAGQRVAVTSRPTGYSTGQYLKQSVSEWFHNKL 711          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A518E4L7_9BACT (Peptidase family M50 n=1 Tax=Lignipirellula cremea TaxID=2528010 RepID=A0A518E4L7_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 3.110e-21
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 1
Query:   82 PVQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQG---DEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRL 363
            P++KV+PRA++T  HPA AAA+GG LPVKP ++   G   D YELL+PRF   + L   +S +L  GQR+ V+ R  H S+G+HLY+  ++W+ +RL
Sbjct:  622 PLEKVIPRATLTPPHPAFAAAHGGPLPVKPTAARSDGSPQDAYELLEPRFTATVRLTPAESRQLRTGQRVVVSHRALHESIGQHLYHAAAAWIRERL 718          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A2D5SCR9_9PLAN (HlyD_D23 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5SCR9_9PLAN)

HSP 1 Score: 84.0 bits (206), Expect = 2.230e-16
Identity = 46/124 (37.10%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYGGALPVKPASS---EKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNKRL 363
            Q +L+ F    G  +   +P  P     ++KV+PRA++  T+PAL    GG+LPVKP      E   D +E L PRF  V++L+   S +L+AGQ    + RP + S+ +HLY  VS W+ ++L
Sbjct:  595 QDDLDVFTQRVGQPVRIDIPRQPPWQARLEKVIPRATLEPTYPALTTINGGSLPVKPTGKKPDESTADAFEFLTPRFTAVVALSPSTSCQLHAGQTGSGSYRPCNASIFQHLYSSVSRWIREQL 718          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A5M6D070_9BACT (HlyD family efflux transporter periplasmic adaptor subunit n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D070_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 1.810e-12
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   85 VQKVVPRASVTLTHPALAAAYGGALPVKPASSEKQ--GDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLY 330
            +++VVPRAS  + HPAL+A+ GG L VKP S+     GD+ ELL P F  ++ L S+QSL L +GQR+ V       S+G+HL+
Sbjct:  617 IERVVPRASRQVPHPALSASNGGPLAVKPVSTANHAGGDKSELLTPHFRAIVPLTSDQSLRLSSGQRVSVYRHAFDRSIGQHLW 700          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: A0A518HZE7_9BACT (Peptidase family M50 n=2 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HZE7_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 4.590e-12
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   91 KVVPRASVTLTHPALAAAYGGALPVKPASSE--KQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWL 351
            K++PRA   + +PAL A  GG LPVK  ++E  + G E+ELL P F  ++ L++ Q ++L++GQR  V+      +VG HL+  ++ W+
Sbjct:  629 KIIPRARTGIDYPALLACNGGPLPVKKVANETSQSGSEFELLVPHFEAIVPLSASQGVDLFSGQRAQVSIGSLDETVGSHLWRMLTEWM 717          
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Match: Q7UWZ3_RHOBA (Peptidase_M50 domain-containing protein n=11 Tax=Rhodopirellula TaxID=265488 RepID=Q7UWZ3_RHOBA)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-7
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query:   88 QKVVPRASVTLTHPALAAAYGGALPVKPASSEKQG-DEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRPQHYSVGRHLYYQVSSWLNK 357
            +K+ PRAS  + HPALAA   G LPV PA  + Q  D YELL PRF  ++ L+   S  + AG+   +  R Q  S+GR  +     WL++
Sbjct:  717 EKLQPRASRQIPHPALAATVDGPLPVAPAKKQSQSSDPYELLTPRFQSIVPLSPAVSDRVRAGETGQMALRDQR-SLGRRFW----DWLSE 802          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124467.4976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2E7KEY5_9PLAN4.200e-7495.93HlyD_D23 domain-containing protein n=5 Tax=Gimesia... [more]
A0A6I6AKG5_9PLAN9.830e-5693.48Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A518AA63_9PLAN1.610e-4359.84Peptidase family M50 n=2 Tax=Gimesia panareensis T... [more]
A0A3C0APK6_9PLAN8.930e-4056.56Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A2E2CAM8_9PLAN4.990e-3656.56HlyD_D23 domain-containing protein n=5 Tax=Plancto... [more]
A0A518E4L7_9BACT3.110e-2147.42Peptidase family M50 n=1 Tax=Lignipirellula cremea... [more]
A0A2D5SCR9_9PLAN2.230e-1637.10HlyD_D23 domain-containing protein n=1 Tax=Plancto... [more]
A0A5M6D070_9BACT1.810e-1246.43HlyD family efflux transporter periplasmic adaptor... [more]
A0A518HZE7_9BACT4.590e-1238.20Peptidase family M50 n=2 Tax=Stieleria neptunia Ta... [more]
Q7UWZ3_RHOBA1.770e-740.66Peptidase_M50 domain-containing protein n=11 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124467contigM-pyrifera_M_contig124467:146..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.8
Seed ortholog evalue5e-07
Seed eggNOG ortholog243090.RB1688
KEGG koko:K01993,ko:K13408,ko:K16922
KEGG TC8.A.1
KEGG Pathwayko04626,map04626
KEGG ModuleM00339
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM peptidase
EggNOG OGs2IWZT@203682,COG0845@1,COG0845@2,COG1994@1,COG1994@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01002,ko02000,ko02044
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.9807334-CDS-M-pyrifera_M_contig124467:145..5171622815761.9807334-CDS-M-pyrifera_M_contig124467:145..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124467 146..517 -
1692277557.3341274-CDS-M-pyrifera_M_contig124467:145..5171692277557.3341274-CDS-M-pyrifera_M_contig124467:145..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124467 146..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124467.4976.1prot_M-pyrifera_M_contig124467.4976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124467 146..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124467.4976.1

>prot_M-pyrifera_M_contig124467.4976.1 ID=prot_M-pyrifera_M_contig124467.4976.1|Name=mRNA_M-pyrifera_M_contig124467.4976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
QHELEHFLNSPGNTILAHLPHHPAIPCPVQKVVPRASVTLTHPALAAAYG
GALPVKPASSEKQGDEYELLDPRFNLVISLASEQSLELYAGQRIDVTCRP
QHYSVGRHLYYQVSSWLNKRLEE*
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mRNA from alignment at M-pyrifera_M_contig124467:146..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124467.4976.1 ID=mRNA_M-pyrifera_M_contig124467.4976.1|Name=mRNA_M-pyrifera_M_contig124467.4976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig124467:146..517- (Macrocystis pyrifera P11B4 male)
CAGCATGAGCTCGAGCATTTCCTGAACTCACCAGGCAACACCATCCTGGC ACATCTCCCTCACCATCCAGCGATTCCCTGTCCGGTGCAGAAGGTGGTCC CTCGTGCCAGTGTGACGTTAACTCATCCCGCACTCGCAGCAGCCTACGGC GGTGCGCTGCCTGTCAAACCAGCGTCCTCCGAAAAACAGGGAGACGAATA CGAGCTGCTCGATCCCCGGTTCAACCTCGTTATCTCGCTCGCCTCAGAGC AGTCTTTAGAGCTTTATGCAGGACAGCGGATTGATGTCACCTGTCGGCCT CAGCACTACTCCGTCGGCCGACATCTGTACTATCAGGTTTCCAGCTGGCT CAACAAACGCCTGGAAGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124467:146..517-

>mRNA_M-pyrifera_M_contig124467.4976.1 ID=mRNA_M-pyrifera_M_contig124467.4976.1|Name=mRNA_M-pyrifera_M_contig124467.4976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig124467:146..517- (Macrocystis pyrifera P11B4 male)
CAGCATGAGCTCGAGCATTTCCTGAACTCACCAGGCAACACCATCCTGGC
ACATCTCCCTCACCATCCAGCGATTCCCTGTCCGGTGCAGAAGGTGGTCC
CTCGTGCCAGTGTGACGTTAACTCATCCCGCACTCGCAGCAGCCTACGGC
GGTGCGCTGCCTGTCAAACCAGCGTCCTCCGAAAAACAGGGAGACGAATA
CGAGCTGCTCGATCCCCGGTTCAACCTCGTTATCTCGCTCGCCTCAGAGC
AGTCTTTAGAGCTTTATGCAGGACAGCGGATTGATGTCACCTGTCGGCCT
CAGCACTACTCCGTCGGCCGACATCTGTACTATCAGGTTTCCAGCTGGCT
CAACAAACGCCTGGAAGAGTAACAGCATGAGCTCGAGCATTTCCTGAACT
CACCAGGCAACACCATCCTGGCACATCTCCCTCACCATCCAGCGATTCCC
TGTCCGGTGCAGAAGGTGGTCCCTCGTGCCAGTGTGACGTTAACTCATCC
CGCACTCGCAGCAGCCTACGGCGGTGCGCTGCCTGTCAAACCAGCGTCCT
CCGAAAAACAGGGAGACGAATACGAGCTGCTCGATCCCCGGTTCAACCTC
GTTATCTCGCTCGCCTCAGAGCAGTCTTTAGAGCTTTATGCAGGACAGCG
GATTGATGTCACCTGTCGGCCTCAGCACTACTCCGTCGGCCGACATCTGT
ACTATCAGGTTTCCAGCTGGCTCAACAAACGCCTGGAAGAGTAA
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