mRNA_M-pyrifera_M_contig124445.4970.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124445.4970.1
Unique NamemRNA_M-pyrifera_M_contig124445.4970.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124445.4970.1 vs. uniprot
Match: E4X208_OIKDI (Uncharacterized protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4X208_OIKDI)

HSP 1 Score: 91.7 bits (226), Expect = 2.970e-20
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 1 
Query:    1 SLRAHRTSLYHLNKGSETTDPTLEYLFDLIGCGDTAFPSIIRVSKYVFVIANYTSPPHLCPNWSWIEGQISPMGSAIYLAWITFE 255
            S R H  +L+ ++K     + T + L DL GCGDTAFPSIIR+S   F++ANY+SP   C +WSW +GQ+SP+G+ IY A I F 
Sbjct:  238 STRPHGVALWRMDK----LEGTFDKLLDLPGCGDTAFPSIIRISASKFIVANYSSPLSRCEDWSWFQGQVSPLGTGIYFAEIEFS 318
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BLAST of mRNA_M-pyrifera_M_contig124445.4970.1 vs. uniprot
Match: UPI000C78F3EE (uncharacterized protein LOC111702671 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78F3EE)

HSP 1 Score: 80.9 bits (198), Expect = 5.460e-16
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 SLRAHRTSLYHLNKGSETTDPTLEYLFDLIGCGDTAFPSIIRVSKYVFVIANYTSP-PHLCPNWSWIEGQISPMGSAIYLAWITFEPQ 261
            SLR H T ++ LN    T   +LE +  L GCGDTAFPSI+R S++ ++I NY+S     CP+ +WI GQISP GS IY+  I FE Q
Sbjct:  313 SLRQHGTGIWKLN----TETGSLEQVLTLAGCGDTAFPSIVRKSRHAYIIFNYSSTLEDNCPH-NWIMGQISPAGSVIYMQEIVFEVQ 395
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BLAST of mRNA_M-pyrifera_M_contig124445.4970.1 vs. uniprot
Match: A0A3C2AHN2_9FLAO (Uncharacterized protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A3C2AHN2_9FLAO)

HSP 1 Score: 65.9 bits (159), Expect = 1.290e-10
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    1 SLRAHRTSLYHLNKGSETTDPTLEYLFDLIGCGDTAFPSIIRVSKYVFVIANYTSPPHLCPNWSWIEGQISPMGSAIYLAWITFEPQA 264
            SL    T+L+ +NK +      +E++ DL G GDTAFPSI+R+ K+ F++ANYTSP +      W+ GQ+    + IYL  ITF P A
Sbjct:  328 SLSPKTTALFKINKETRK----VEWVMDLPGAGDTAFPSILRLDKHRFLVANYTSPINHQKR-DWLMGQLGK--TKIYLQLITFSPCA 408
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124445.4970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
E4X208_OIKDI2.970e-2049.41Uncharacterized protein n=2 Tax=Oikopleura dioica ... [more]
UPI000C78F3EE5.460e-1650.00uncharacterized protein LOC111702671 n=1 Tax=Euryt... [more]
A0A3C2AHN2_9FLAO1.290e-1043.18Uncharacterized protein n=1 Tax=Flavobacteriales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124445contigM-pyrifera_M_contig124445:251..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.75972-CDS-M-pyrifera_M_contig124445:250..5171622815761.75972-CDS-M-pyrifera_M_contig124445:250..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124445 251..517 -
1692277557.23754-CDS-M-pyrifera_M_contig124445:250..5171692277557.23754-CDS-M-pyrifera_M_contig124445:250..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124445 251..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124445.4970.1prot_M-pyrifera_M_contig124445.4970.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124445 251..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124445.4970.1

>prot_M-pyrifera_M_contig124445.4970.1 ID=prot_M-pyrifera_M_contig124445.4970.1|Name=mRNA_M-pyrifera_M_contig124445.4970.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
SLRAHRTSLYHLNKGSETTDPTLEYLFDLIGCGDTAFPSIIRVSKYVFVI
ANYTSPPHLCPNWSWIEGQISPMGSAIYLAWITFEPQA*
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mRNA from alignment at M-pyrifera_M_contig124445:251..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124445.4970.1 ID=mRNA_M-pyrifera_M_contig124445.4970.1|Name=mRNA_M-pyrifera_M_contig124445.4970.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig124445:251..517- (Macrocystis pyrifera P11B4 male)
TCCCTCCGCGCGCACCGAACATCCCTCTACCACCTCAACAAGGGCTCCGA
GACCACAGACCCCACCTTGGAGTACCTCTTCGACCTCATCGGGTGTGGAG
ACACTGCCTTCCCTTCCATCATCCGAGTCTCAAAGTACGTCTTTGTCATC
GCCAACTACACTTCCCCGCCACACCTCTGCCCCAACTGGTCCTGGATTGA
GGGGCAAATCTCACCAATGGGATCCGCCATCTACCTCGCATGGATCACAT
TCGAGCCACAAGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124445:251..517-

>mRNA_M-pyrifera_M_contig124445.4970.1 ID=mRNA_M-pyrifera_M_contig124445.4970.1|Name=mRNA_M-pyrifera_M_contig124445.4970.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig124445:251..517- (Macrocystis pyrifera P11B4 male)
TCCCTCCGCGCGCACCGAACATCCCTCTACCACCTCAACAAGGGCTCCGA
GACCACAGACCCCACCTTGGAGTACCTCTTCGACCTCATCGGGTGTGGAG
ACACTGCCTTCCCTTCCATCATCCGAGTCTCAAAGTACGTCTTTGTCATC
GCCAACTACACTTCCCCGCCACACCTCTGCCCCAACTGGTCCTGGATTGA
GGGGCAAATCTCACCAATGGGATCCGCCATCTACCTCGCATGGATCACAT
TCGAGCCACAAGCCTAGTCCCTCCGCGCGCACCGAACATCCCTCTACCAC
CTCAACAAGGGCTCCGAGACCACAGACCCCACCTTGGAGTACCTCTTCGA
CCTCATCGGGTGTGGAGACACTGCCTTCCCTTCCATCATCCGAGTCTCAA
AGTACGTCTTTGTCATCGCCAACTACACTTCCCCGCCACACCTCTGCCCC
AACTGGTCCTGGATTGAGGGGCAAATCTCACCAATGGGATCCGCCATCTA
CCTCGCATGGATCACATTCGAGCCACAAGCCTAG
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