mRNA_M-pyrifera_M_contig12443.4964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12443.4964.1
Unique NamemRNA_M-pyrifera_M_contig12443.4964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: D7FJ05_ECTSI (Tyrosine-protein phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ05_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.130e-28
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TVVACLRKLQRWNLTSIFEEYRRFTKHKVRV++EQFIELFDTDLVHLPPEAP+++
Sbjct:  111 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVQNEQFIELFDTDLVHLPPEAPRFV 165
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A835YIK6_9STRA (Protein-tyrosine phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.990e-25
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYLL 168
            TVVACLRKLQRWNL+SIFEEYR FTKHKVRV++EQFIELFDTDLV +PP  P++L+
Sbjct:  116 TVVACLRKLQRWNLSSIFEEYRHFTKHKVRVQNEQFIELFDTDLVRIPPRPPRFLV 171
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A7S2BN42_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BN42_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.250e-21
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TVVACLRKLQRWNLTSIFEEYRRF  HK R ++EQFIELFD D VH+PP AP +L
Sbjct:  131 TVVACLRKLQRWNLTSIFEEYRRFAGHKRRPQNEQFIELFDIDQVHVPPRAPAFL 185
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: F0ZWN6_DICPU (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Dictyostelia TaxID=33083 RepID=F0ZWN6_DICPU)

HSP 1 Score: 89.0 bits (219), Expect = 5.770e-21
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TV+ CLRKLQRWNLTSIFEEYRRF   KVR+ +EQFIELFDTDLV +P  APK+L
Sbjct:  110 TVIGCLRKLQRWNLTSIFEEYRRFAGSKVRLLNEQFIELFDTDLVGIPDNAPKFL 164
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A7S2G5U2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5U2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.360e-21
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TVVACLRKLQRWNL S+FEEYRRF  +K R+++EQFIELFD DLVH+P  AP +L
Sbjct:   54 TVVACLRKLQRWNLASVFEEYRRFAGNKRRLQNEQFIELFDVDLVHVPANAPAFL 108
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A197JT71_9FUNG (Protein-tyrosine phosphatase (Fragment) n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JT71_9FUNG)

HSP 1 Score: 86.7 bits (213), Expect = 3.550e-20
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            T+V CLRKLQRWNLTSIFEEYRR+   KVRV +EQFIELFDTDLV +P + PK+L
Sbjct:  102 TIVGCLRKLQRWNLTSIFEEYRRYAGPKVRVLNEQFIELFDTDLVRVPMDHPKWL 156
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A1Y3NIN6_PIRSE (Tyrosine-protein phosphatase domain-containing protein n=4 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y3NIN6_PIRSE)

HSP 1 Score: 85.9 bits (211), Expect = 8.830e-20
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TV+ CLRKLQRWNLTSIFEEYRR+   KVR+ +EQFIELFDTDLV +PP+  K+L
Sbjct:  111 TVIGCLRKLQRWNLTSIFEEYRRYAGPKVRLLNEQFIELFDTDLVRIPPQYVKWL 165
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BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A4P9ZYM5_9FUNG (Protein-tyrosine phosphatase n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZYM5_9FUNG)

HSP 1 Score: 85.5 bits (210), Expect = 1.280e-19
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            TVV CLRKLQRWNL SIFEEYRR+   KVR+ +EQFIELFDTDLV +P + PK+L
Sbjct:  112 TVVGCLRKLQRWNLASIFEEYRRYAGQKVRLLNEQFIELFDTDLVRIPVDQPKWL 166
[Close]
BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A397U5Q8_9GLOM (Protein-tyrosine phosphatase n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U5Q8_9GLOM)

HSP 1 Score: 85.1 bits (209), Expect = 2.130e-19
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            T+V CLRKLQ+WNLTSIFEEYRR+   KVRV +EQFIELFDTDLV +P   PK+L
Sbjct:  119 TIVGCLRKLQKWNLTSIFEEYRRYAGPKVRVLNEQFIELFDTDLVRVPVNRPKWL 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Match: A0A2Z6RTS2_9GLOM (Tyrosine-protein phosphatase domain-containing protein n=12 Tax=Glomeromycetes TaxID=214506 RepID=A0A2Z6RTS2_9GLOM)

HSP 1 Score: 85.1 bits (209), Expect = 2.280e-19
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPEAPKYL 165
            T+V CLRKLQ+WNLTSIFEEYRR+   KVRV +EQFIELFDTDLV +P   PK+L
Sbjct:  122 TIVGCLRKLQKWNLTSIFEEYRRYAGPKVRVLNEQFIELFDTDLVRVPVNRPKWL 176
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12443.4964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ05_ECTSI1.130e-2890.91Tyrosine-protein phosphatase domain-containing pro... [more]
A0A835YIK6_9STRA7.990e-2580.36Protein-tyrosine phosphatase n=1 Tax=Tribonema min... [more]
A0A7S2BN42_9STRA2.250e-2178.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0ZWN6_DICPU5.770e-2176.36Tyrosine-protein phosphatase domain-containing pro... [more]
A0A7S2G5U2_9STRA7.360e-2172.73Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A197JT71_9FUNG3.550e-2074.55Protein-tyrosine phosphatase (Fragment) n=2 Tax=Mo... [more]
A0A1Y3NIN6_PIRSE8.830e-2072.73Tyrosine-protein phosphatase domain-containing pro... [more]
A0A4P9ZYM5_9FUNG1.280e-1972.73Protein-tyrosine phosphatase n=1 Tax=Dimargaris cr... [more]
A0A397U5Q8_9GLOM2.130e-1972.73Protein-tyrosine phosphatase n=2 Tax=Gigaspora Tax... [more]
A0A2Z6RTS2_9GLOM2.280e-1972.73Tyrosine-protein phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12443contigM-pyrifera_M_contig12443:6381..6999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue2.6e-22
Seed eggNOG ortholog2880.D7FJ05
Preferred nameOCA1
KEGG koko:K18043
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0033554,GO:0034599,GO:0035335,GO:0036211,GO:0042221,GO:0042578,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051716,GO:0070887,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine phosphatase activity
EggNOG OGsCOG2365@1,KOG1572@2759
EC3.1.3.48
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons2
Model size179
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.5266237-CDS-M-pyrifera_M_contig12443:6380..64641622815761.5266237-CDS-M-pyrifera_M_contig12443:6380..6464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12443 6381..6464 +
1692277557.1349049-CDS-M-pyrifera_M_contig12443:6380..64641692277557.1349049-CDS-M-pyrifera_M_contig12443:6380..6464Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12443 6381..6464 +
1622815761.5381448-CDS-M-pyrifera_M_contig12443:6906..69991622815761.5381448-CDS-M-pyrifera_M_contig12443:6906..6999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12443 6907..6999 +
1692277557.1478875-CDS-M-pyrifera_M_contig12443:6906..69991692277557.1478875-CDS-M-pyrifera_M_contig12443:6906..6999Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12443 6907..6999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12443.4964.1prot_M-pyrifera_M_contig12443.4964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12443 6381..6999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12443.4964.1

>prot_M-pyrifera_M_contig12443.4964.1 ID=prot_M-pyrifera_M_contig12443.4964.1|Name=mRNA_M-pyrifera_M_contig12443.4964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
TVVACLRKLQRWNLTSIFEEYRRFTKHKVRVRSEQFIELFDTDLVHLPPE
APKYLLNR*
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mRNA from alignment at M-pyrifera_M_contig12443:6381..6999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12443.4964.1 ID=mRNA_M-pyrifera_M_contig12443.4964.1|Name=mRNA_M-pyrifera_M_contig12443.4964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=619bp|location=Sequence derived from alignment at M-pyrifera_M_contig12443:6381..6999+ (Macrocystis pyrifera P11B4 male)
ACCGTGGTTGCTTGCCTTCGGAAGCTTCAACGATGGAATTTGACATCCAT
TTTTGAAGAATACCGCCGGTTCACCAAGCACAAGGTAGGTGTATTGTTTT
TGCAGTCTGTACCGAACATACGGTTGTAACCGGTTGCTGTACTCGCGCGT
AGCCGGTTCCTGTCATGTTCACGGACCCTTCACGATGCTGCGATCATTTG
TCGAAGGTTGAGATTTAGGCTACGCTGTAATATGCTCTGAAGGCGGCACT
CAACTGCGGCTCAAATAGGGTTGAAAACGCATTGTACAGAGTTTCAGACG
CTCGACATTCTCATCGCGTCGCAACTGACTGCTGTTGGCCAAATTCCAAG
AATGATATTGTACTATTGTAAGTCTTACACCTCTGGATACGTTTTGACAG
TAAACAACACCTCGTAGTGTGCTCCAGGGATACAACTGCGATTTCCCAAC
CTCTGAGATATTCTGAAGACGCACACGCTGTCCCATCTACTCCACCGCCG
TTTTAATCTGTACTTTTCCTTGCCAGGTCAGAGTGCGAAGTGAACAATTC
ATCGAGTTGTTCGATACAGACCTTGTACACCTGCCTCCAGAGGCTCCAAA
ATACCTGCTAAACCGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12443:6381..6999+

>mRNA_M-pyrifera_M_contig12443.4964.1 ID=mRNA_M-pyrifera_M_contig12443.4964.1|Name=mRNA_M-pyrifera_M_contig12443.4964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig12443:6381..6999+ (Macrocystis pyrifera P11B4 male)
ACCGTGGTTGCTTGCCTTCGGAAGCTTCAACGATGGAATTTGACATCCAT
TTTTGAAGAATACCGCCGGTTCACCAAGCACAAGACCGTGGTTGCTTGCC
TTCGGAAGCTTCAACGATGGAATTTGACATCCATTTTTGAAGAATACCGC
CGGTTCACCAAGCACAAGGTCAGAGTGCGAAGTGAACAATTCATCGAGTT
GTTCGATACAGACCTTGTACACCTGCCTCCAGAGGCTCCAAAATACCTGC
TAAACCGTTGAGTCAGAGTGCGAAGTGAACAATTCATCGAGTTGTTCGAT
ACAGACCTTGTACACCTGCCTCCAGAGGCTCCAAAATACCTGCTAAACCG
TTGA
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