prot_M-pyrifera_M_contig124424.4961.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig124424.4961.1
Unique Nameprot_M-pyrifera_M_contig124424.4961.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length87
Homology
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S3PGN0_9STRA (AP complex subunit sigma n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGN0_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.470e-35
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 85
            + PEENEL+TLE IHHFVEVLD+YFGNVCELDIIFNFHKA+YI+DE+ + G L E SKREVLR  AA+DE+M++ +ER+ K G
Sbjct:   73 ISPEENELITLEAIHHFVEVLDKYFGNVCELDIIFNFHKAYYILDEIFLGGELEETSKREVLRVAAAQDELMEEEKERENKFG 155          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S1CCD6_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCD6_9STRA)

HSP 1 Score: 119 bits (299), Expect = 9.780e-33
Identity = 55/85 (64.71%), Postives = 74/85 (87.06%), Query Frame = 0
Query:    1 MSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 85
            ++V P++NEL+TLET+HHFVEVLDRYFGNVCELDIIFNFHKA+Y++DE+L++G L E +K  +L ACAA+D MM++++E  GK G
Sbjct:   69 VAVDPDDNELITLETVHHFVEVLDRYFGNVCELDIIFNFHKAYYLLDEVLLNGHLQEANKMTILDACAAQDAMMEESKE--GKPG 151          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.380e-31
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 85
            V  E+NEL+TLE IH +VEVLDRYFGNVCELDIIFNFHKA+YI+DE+ V G LCE SK+EVL  CA  DE+M++  E K  SG
Sbjct:   71 VDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASG 153          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 116 bits (290), Expect = 4.200e-31
Identity = 58/85 (68.24%), Postives = 69/85 (81.18%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARER-KGKSGR 86
            V  E+NEL+TLE IH FVEVLDRYFGNVCELDIIFNFHKA+YI+DE+ ++G L E SK+EVL  CA  DEMMD+++E   GK GR
Sbjct:   90 VDSEDNELITLEMIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELFIAGELEESSKKEVLSICAQMDEMMDESKEEGNGKGGR 174          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A024THD2_9STRA (AP complex subunit sigma n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024THD2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.260e-31
Identity = 51/77 (66.23%), Postives = 66/77 (85.71%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 79
            +  EENEL+TLE IH FVEVLDRYFGNVCELDIIFNFHKA+YI+DE+L+ G L EPSK+E+LR C  +++ M++++E
Sbjct:   71 ISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKE 147          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 115 bits (288), Expect = 6.400e-31
Identity = 57/84 (67.86%), Postives = 67/84 (79.76%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSGR 86
            V  E+NEL+TLE IH FVEVLDRYFGNVCELDIIFNFHKA+YI+DE+ + G L E SK EVLR CAA DEMMD++++     GR
Sbjct:   70 VDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDEGTTPGR 153          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A1Y1IM11_KLENI (AP complex subunit sigma n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IM11_KLENI)

HSP 1 Score: 115 bits (287), Expect = 8.340e-31
Identity = 51/82 (62.20%), Postives = 70/82 (85.37%), Query Frame = 0
Query:    1 MSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKG 82
            M + P +NEL TLETIHHFVE+LDRYFGNVCELD+IFNFHKA++I+DE+L++G L E SK+ V R  AA+D++++ A+E++G
Sbjct:   69 MCIDPSDNELATLETIHHFVEILDRYFGNVCELDLIFNFHKAYFILDEVLMAGELQESSKKSVARVIAAQDQLVESAKEQQG 150          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A0G4FK91_VITBC (AP complex subunit sigma n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FK91_VITBC)

HSP 1 Score: 114 bits (286), Expect = 1.060e-30
Identity = 51/77 (66.23%), Postives = 67/77 (87.01%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 79
            V  ++NEL+TLE IHHFVE+LDRYFGNVCELD+IFNFHKA+YI+DE+L+SG L E SK+ VLR  AA+D+MM++ ++
Sbjct:   72 VDKDDNELITLEVIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELLISGELQESSKKTVLRVVAAQDQMMEEGKD 148          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: K3X664_GLOUD (AP complex subunit sigma n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X664_GLOUD)

HSP 1 Score: 114 bits (284), Expect = 2.580e-30
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 0
Query:    3 VKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 79
            +  +ENEL+TLETIH FVEVLDRYFGNVCELDIIFNFHKA+YI+DEM + G   E SK+EVLR C A+++ MD+++E
Sbjct:   78 ISKDENELITLETIHMFVEVLDRYFGNVCELDIIFNFHKAYYILDEMFIGGFQVESSKKEVLRICTAQEDYMDESKE 154          
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A8J2ADV2_9DINO (AP complex subunit sigma n=2 Tax=unclassified Amoebophrya TaxID=2558461 RepID=A0A8J2ADV2_9DINO)

HSP 1 Score: 113 bits (283), Expect = 3.010e-30
Identity = 52/80 (65.00%), Postives = 66/80 (82.50%), Query Frame = 0
Query:    2 SVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERK 81
            +V PE+NELL LE IHHFVE LDRYFGNVCELD+IFNFHKA+YI DE+ ++G L E SK++VLR  A +D MM+D +++K
Sbjct:   70 AVDPEDNELLVLEVIHHFVECLDRYFGNVCELDLIFNFHKAYYIFDELFINGELQETSKKQVLRLIAEQDAMMEDKKDQK 149          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PGN0_9STRA8.470e-3569.88AP complex subunit sigma n=1 Tax=Aplanochytrium st... [more]
A0A7S1CCD6_9STRA9.780e-3364.71AP complex subunit sigma n=1 Tax=Bicosoecida sp. C... [more]
A0A7S4A8C4_9STRA1.380e-3167.47AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
F0Y8T1_AURAN4.200e-3168.24AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A024THD2_9STRA5.260e-3166.23AP complex subunit sigma n=12 Tax=Saprolegniaceae ... [more]
A0A812YG65_SYMMI6.400e-3167.86AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
A0A1Y1IM11_KLENI8.340e-3162.20AP complex subunit sigma n=1 Tax=Klebsormidium nit... [more]
A0A0G4FK91_VITBC1.060e-3066.23AP complex subunit sigma n=1 Tax=Vitrella brassica... [more]
K3X664_GLOUD2.580e-3067.53AP complex subunit sigma n=1 Tax=Globisporangium u... [more]
A0A8J2ADV2_9DINO3.010e-3065.00AP complex subunit sigma n=2 Tax=unclassified Amoe... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.60coord: 1..84
e-value: 2.5E-27
score: 97.4
NoneNo IPR availablePANTHERPTHR11753:SF5AP COMPLEX SUBUNIT SIGMAcoord: 1..81
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 2..72
e-value: 1.3E-23
score: 83.5
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 1..81
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 3..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124424contigM-pyrifera_M_contig124424:42..302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124424.4961.1mRNA_M-pyrifera_M_contig124424.4961.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig124424 18..302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig124424.4961.1 ID=prot_M-pyrifera_M_contig124424.4961.1|Name=mRNA_M-pyrifera_M_contig124424.4961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEML
VSGRLCEPSKREVLRACAAEDEMMDDARERKGKSGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf