mRNA_M-pyrifera_M_contig124424.4961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124424.4961.1
Unique NamemRNA_M-pyrifera_M_contig124424.4961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S3PGN0_9STRA (AP complex subunit sigma n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PGN0_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.140e-39
Identity = 64/93 (68.82%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 279
            RYASL+F+  + PEENEL+TLE IHHFVEVLD+YFGNVCELDIIFNFHKA+YI+DE+ + G L E SKREVLR  AA+DE+M++ +ER+ K G
Sbjct:   63 RYASLYFITIISPEENELITLEAIHHFVEVLDKYFGNVCELDIIFNFHKAYYILDEIFLGGELEETSKREVLRVAAAQDELMEEEKERENKFG 155
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S1CCD6_9STRA (AP complex subunit sigma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CCD6_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.140e-38
Identity = 63/93 (67.74%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 279
            RYASLFFV++V P++NEL+TLET+HHFVEVLDRYFGNVCELDIIFNFHKA+Y++DE+L++G L E +K  +L ACAA+D MM++++E  GK G
Sbjct:   61 RYASLFFVVAVDPDDNELITLETVHHFVEVLDRYFGNVCELDIIFNFHKAYYLLDEVLLNGHLQEANKMTILDACAAQDAMMEESKE--GKPG 151
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.300e-37
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 279
            RYASLFF++ V  E+NEL+TLE IH +VEVLDRYFGNVCELDIIFNFHKA+YI+DE+ V G LCE SK+EVL  CA  DE+M++  E K  SG
Sbjct:   61 RYASLFFIVCVDAEDNELITLEMIHLYVEVLDRYFGNVCELDIIFNFHKAYYILDEIFVGGELCESSKKEVLSVCAQMDELMEEREEDKAASG 153
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A024THD2_9STRA (AP complex subunit sigma n=12 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024THD2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 3.550e-36
Identity = 58/87 (66.67%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 261
            RYASL+FV  +  EENEL+TLE IH FVEVLDRYFGNVCELDIIFNFHKA+YI+DE+L+ G L EPSK+E+LR C  +++ M++++E
Sbjct:   61 RYASLYFVACISKEENELITLEVIHLFVEVLDRYFGNVCELDIIFNFHKAYYILDELLIGGNLQEPSKKEILRVCQQQEDFMEESKE 147
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A812YG65_SYMMI (AP complex subunit sigma (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YG65_SYMMI)

HSP 1 Score: 128 bits (322), Expect = 6.170e-36
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSGR 282
            RYASL+F+  V  E+NEL+TLE IH FVEVLDRYFGNVCELDIIFNFHKA+YI+DE+ + G L E SK EVLR CAA DEMMD++++     GR
Sbjct:   60 RYASLYFIACVDKEDNELITLEKIHLFVEVLDRYFGNVCELDIIFNFHKAYYIMDELFIGGYLQETSKAEVLRICAAMDEMMDESKDEGTTPGR 153
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A0G4FK91_VITBC (AP complex subunit sigma n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FK91_VITBC)

HSP 1 Score: 128 bits (321), Expect = 7.150e-36
Identity = 58/87 (66.67%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 261
            RYASL+FV  V  ++NEL+TLE IHHFVE+LDRYFGNVCELD+IFNFHKA+YI+DE+L+SG L E SK+ VLR  AA+D+MM++ ++
Sbjct:   62 RYASLYFVACVDKDDNELITLEVIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELLISGELQESSKKTVLRVVAAQDQMMEEGKD 148
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: K3X664_GLOUD (AP complex subunit sigma n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X664_GLOUD)

HSP 1 Score: 128 bits (321), Expect = 8.760e-36
Identity = 59/87 (67.82%), Postives = 73/87 (83.91%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARE 261
            RYASLFF+  +  +ENEL+TLETIH FVEVLDRYFGNVCELDIIFNFHKA+YI+DEM + G   E SK+EVLR C A+++ MD+++E
Sbjct:   68 RYASLFFIACISKDENELITLETIHMFVEVLDRYFGNVCELDIIFNFHKAYYILDEMFIGGFQVESSKKEVLRICTAQEDYMDESKE 154
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.130e-35
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKGKSG 279
            RYASLFFV  V  E+NEL+TLE IH FVE+LDRYFGNVCELDIIFNFHKA+YI+DE+ ++G L E SK+EVL  CA  DEMMD++++ +G SG
Sbjct:   75 RYASLFFVACVDKEDNELVTLEMIHLFVEILDRYFGNVCELDIIFNFHKAYYILDELFINGELQESSKKEVLSVCAQMDEMMDESKD-EGTSG 166
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A8J2ADV2_9DINO (AP complex subunit sigma n=2 Tax=unclassified Amoebophrya TaxID=2558461 RepID=A0A8J2ADV2_9DINO)

HSP 1 Score: 127 bits (319), Expect = 1.440e-35
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERK 267
            RYASL+F+ +V PE+NELL LE IHHFVE LDRYFGNVCELD+IFNFHKA+YI DE+ ++G L E SK++VLR  A +D MM+D +++K
Sbjct:   61 RYASLYFIFAVDPEDNELLVLEVIHHFVECLDRYFGNVCELDLIFNFHKAYYIFDELFINGELQETSKKQVLRLIAEQDAMMEDKKDQK 149
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BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Match: A0A2V0PCS4_9CHLO (AP complex subunit sigma n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PCS4_9CHLO)

HSP 1 Score: 127 bits (319), Expect = 1.520e-35
Identity = 60/90 (66.67%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    1 RYASLFFVMSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEMLVSGRLCEPSKREVLRACAAEDEMMDDARERKG 270
            RYASL+FV  V P +NELL LETIH FVEVLDRYFGNVCELD+IFNFHKA+YI+DE+L++G L EPSKR V RA  A+D++++ A++ +G
Sbjct:   61 RYASLYFVCGVDPGDNELLVLETIHEFVEVLDRYFGNVCELDLIFNFHKAYYILDEILIAGELQEPSKRAVARAIEAQDQLVEGAKDGEG 150
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124424.4961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PGN0_9STRA1.140e-3968.82AP complex subunit sigma n=1 Tax=Aplanochytrium st... [more]
A0A7S1CCD6_9STRA1.140e-3867.74AP complex subunit sigma n=1 Tax=Bicosoecida sp. C... [more]
A0A7S4A8C4_9STRA2.300e-3767.74AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A024THD2_9STRA3.550e-3666.67AP complex subunit sigma n=12 Tax=Saprolegniaceae ... [more]
A0A812YG65_SYMMI6.170e-3667.02AP complex subunit sigma (Fragment) n=1 Tax=Symbio... [more]
A0A0G4FK91_VITBC7.150e-3666.67AP complex subunit sigma n=1 Tax=Vitrella brassica... [more]
K3X664_GLOUD8.760e-3667.82AP complex subunit sigma n=1 Tax=Globisporangium u... [more]
A0A7S2SD76_9STRA1.130e-3567.74AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
A0A8J2ADV2_9DINO1.440e-3565.17AP complex subunit sigma n=2 Tax=unclassified Amoe... [more]
A0A2V0PCS4_9CHLO1.520e-3566.67AP complex subunit sigma n=1 Tax=Raphidocelis subc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124424contigM-pyrifera_M_contig124424:18..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog44056.XP_009036665.1
Preferred nameAP1S2
KEGG koko:K12394,ko:K12395
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size285
Cds size261
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.369725-UTR-M-pyrifera_M_contig124424:17..411622815761.369725-UTR-M-pyrifera_M_contig124424:17..41Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124424 18..41 +
1692277557.0545743-UTR-M-pyrifera_M_contig124424:17..411692277557.0545743-UTR-M-pyrifera_M_contig124424:17..41Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124424 18..41 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.3794296-CDS-M-pyrifera_M_contig124424:41..3021622815761.3794296-CDS-M-pyrifera_M_contig124424:41..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124424 42..302 +
1692277557.0697293-CDS-M-pyrifera_M_contig124424:41..3021692277557.0697293-CDS-M-pyrifera_M_contig124424:41..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124424 42..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124424.4961.1prot_M-pyrifera_M_contig124424.4961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124424 42..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124424.4961.1

>prot_M-pyrifera_M_contig124424.4961.1 ID=prot_M-pyrifera_M_contig124424.4961.1|Name=mRNA_M-pyrifera_M_contig124424.4961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MSVKPEENELLTLETIHHFVEVLDRYFGNVCELDIIFNFHKAFYIVDEML
VSGRLCEPSKREVLRACAAEDEMMDDARERKGKSGR*
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mRNA from alignment at M-pyrifera_M_contig124424:18..302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124424.4961.1 ID=mRNA_M-pyrifera_M_contig124424.4961.1|Name=mRNA_M-pyrifera_M_contig124424.4961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig124424:18..302+ (Macrocystis pyrifera P11B4 male)
AGGTATGCGTCGCTGTTTTTCGTCATGTCGGTGAAGCCTGAAGAGAACGA
GTTGCTGACGTTGGAGACGATCCATCACTTTGTGGAGGTGTTGGACCGGT
ACTTTGGCAACGTATGCGAGCTGGATATCATCTTCAACTTCCACAAAGCG
TTCTACATTGTGGATGAGATGTTAGTGTCGGGCAGGCTGTGCGAGCCGAG
CAAGCGGGAGGTGCTGCGGGCGTGCGCTGCGGAAGACGAGATGATGGACG
ATGCGCGAGAGCGCAAGGGCAAGTCGGGGCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124424:18..302+

>mRNA_M-pyrifera_M_contig124424.4961.1 ID=mRNA_M-pyrifera_M_contig124424.4961.1|Name=mRNA_M-pyrifera_M_contig124424.4961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig124424:18..302+ (Macrocystis pyrifera P11B4 male)
ATGTCGGTGAAGCCTGAAGAGAACGAGTTGCTGACGTTGGAGACGATCCA
TCACTTTGTGGAGGTGTTGGACCGGTACTTTGGCAACGTATGCGAGCTGG
ATATCATCTTCAACTTCCACAAAGCGTTCTACATTGTGGATGAGATGTTA
GTGTCGGGCAGGCTGTGCGAGCCGAGCAAGCGGGAGGTGCTGCGGGCGTG
CGCTGCGGAAGACGAGATGATGGACGATGCGCGAGAGCGCAAGGGCAAGT
CGGGGCGCTGAATGTCGGTGAAGCCTGAAGAGAACGAGTTGCTGACGTTG
GAGACGATCCATCACTTTGTGGAGGTGTTGGACCGGTACTTTGGCAACGT
ATGCGAGCTGGATATCATCTTCAACTTCCACAAAGCGTTCTACATTGTGG
ATGAGATGTTAGTGTCGGGCAGGCTGTGCGAGCCGAGCAAGCGGGAGGTG
CTGCGGGCGTGCGCTGCGGAAGACGAGATGATGGACGATGCGCGAGAGCG
CAAGGGCAAGTCGGGGCGCTGA
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