mRNA_M-pyrifera_M_contig12441.4956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12441.4956.1
Unique NamemRNA_M-pyrifera_M_contig12441.4956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: D7G9C6_ECTSI (Homologue of a Golgi anti-apoptotic protein identified from vaccinia virus. Transmembrane BAX inhi n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9C6_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 1.950e-75
Identity = 124/168 (73.81%), Postives = 136/168 (80.95%), Query Frame = 1
Query:    1 DKGEDYEILEAGQRFNDDASAGLAERP----WASGEDVEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            D+ +DYEILEAG   N +             W S  ++EK LRLGFIRKVYGILS+QLLLT AV +VCVLND VRTGIL N WTVWVG   S+ LL+CL+CYRDKYP NMYLLGAWTFVEAYT+GVVCAAYASQGQGTIV+QAAGLTMAVFLGLTLFTFQTKIDFSFL
Sbjct:   26 DQQQDYEILEAGLVHNVNPGGXXXXXXXXXGWGSTAEIEKALRLGFIRKVYGILSIQLLLTAAVAAVCVLNDNVRTGILGNLWTVWVGFFFSIGLLLCLMCYRDKYPLNMYLLGAWTFVEAYTVGVVCAAYASQGQGTIVVQAAGLTMAVFLGLTLFTFQTKIDFSFL 193          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A7S2UZ05_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ05_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.330e-41
Identity = 82/164 (50.00%), Postives = 108/164 (65.85%), Query Frame = 1
Query:    1 DKGEDYEILEAGQRFNDDASAGLAERPWASGEDVEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            DK   Y+ LEAG+  ++           +S E +E  LR GFIRKVYGILS QL LT A+ ++ +L       +L N W  WV ++LS VLL  L C++DK+P NMYLL AWT   +Y +G++CAAY + GQG IV++A GLT+ VFLGLT+FT Q+K DFSFL
Sbjct:   17 DKQTPYQDLEAGKPSDE-----------SSQERMEAVLRKGFIRKVYGILSFQLFLTTALSALFMLYQPALHWVLTNTWMYWVTLVLSFVLLFALFCFKDKHPTNMYLLTAWTACMSYGVGLICAAYQATGQGKIVLEAVGLTLTVFLGLTVFTMQSKWDFSFL 169          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A7S4HCX1_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HCX1_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 3.300e-34
Identity = 64/127 (50.39%), Postives = 90/127 (70.87%), Query Frame = 1
Query:  112 LRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            +R GFIRKVY IL++QL++T    ++C+L+D +R  +L  P   +  + L L L+  L+CY+DK+P N+ LLG +T  EAYT+GV+CA Y + G G +V+QA  LT AVF+GLT +TF TK DFSFL
Sbjct:   26 IRAGFIRKVYSILAIQLIVTVGGAALCMLHDGIRETVLHTPSMFYAAMFLPLGLIFALMCYKDKHPTNIILLGCFTVCEAYTVGVICAMYYASGMGMLVLQALMLTAAVFVGLTAYTFTTKKDFSFL 152          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A835ZDG7_9STRA (Inhibitor of apoptosis-promoting Bax1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDG7_9STRA)

HSP 1 Score: 128 bits (321), Expect = 1.520e-33
Identity = 70/148 (47.30%), Postives = 97/148 (65.54%), Query Frame = 1
Query:   52 DASAGLAERP-WASGEDVEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            D  +GL   P + +G D EK+LR GFIRKVY +LSLQL+LT  V ++    D VR  +L++ W  +  +   L +L  + CY++ +P N+ LL AWT +E+  +G V A+YAS G G  V+ A  LT+ +F GLTLFTFQ+KIDFSFL
Sbjct:   32 DVESGLPTAPGYVAGFDREKELRRGFIRKVYTVLSLQLMLTCGVCAIFTFVDPVRNYMLSHMWPFYTSMFGGLAVLFLMFCYQNVHPTNIVLLTAWTLMESVLVGTVVASYASAGAGGAVVNALFLTLTIFAGLTLFTFQSKIDFSFL 179          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A7S3ZLV5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZLV5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.670e-31
Identity = 64/131 (48.85%), Postives = 92/131 (70.23%), Query Frame = 1
Query:  100 VEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            V++Q+RLGFIRKVYGIL+ QL LT  V SV  LN A R  ++  P  +++G+  S  +L  L+ +++++P N  LL  WT +EAYT+GVVCA+Y + GQG IV++A  LT A+F  LTL+T  +K D+SF+
Sbjct:   57 VQRQMRLGFIRKVYGILTCQLALTTIVCSVLALNGACRRFVMTTPSLMYIGMFGSFGVLFALMAFKNQHPLNAQLLFVWTLMEAYTVGVVCASYTAAGQGRIVVEALVLTAAIFASLTLYTVYSKRDWSFM 187          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A7S2GPE1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPE1_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.000e-31
Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 1
Query:   34 GQRFNDDASAGLAERPWASGEDVEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFT-FQTK--IDFSFL 492
            G  F D+ +     + +A    +E QLR GFIRKVYGILS QLL+T A  ++ + N ++ T I  N W  +V +  S  LL  L CY+  +P N++LL AWTFVEAYT+ ++CA YA+ G+G +V++A  LT + F+GL+ +  + TK  +DFS++
Sbjct:   30 GYNFLDEETGSSGMKEYA----LESQLRNGFIRKVYGILSCQLLMTCAFCTIAIYNTSINTFITTNIWLFYVAMFSSFGLLAALFCYKSIHPLNLFLLAAWTFVEAYTVAIICAMYANAGEGKLVVEALVLTGSTFIGLSTYAWYATKRGVDFSWM 181          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: B8CB69_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB69_THAPS)

HSP 1 Score: 119 bits (297), Expect = 1.540e-30
Identity = 60/123 (48.78%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  124 FIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            FIRKVY ILS+QL+LT  V +   ++   +  +L + W V + ++ S+ L+V L+CY+DK+P NMYLL  +T VEA+ +G    AY + G   +V++A  LT A+F+GLTLFTFQ+KIDFSFL
Sbjct:    6 FIRKVYSILSVQLVLTGVVSTFMAMHVPTQIYVLTHGWPVTLSMVTSIALIVALMCYKDKHPENMYLLATFTIVEAFLVGTTTTAYCAAGYEGVVLEAVFLTGAIFIGLTLFTFQSKIDFSFL 128          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: UPI000995CBD7 (protein lifeguard 4-like n=1 Tax=Pseudomyrmex gracilis TaxID=219809 RepID=UPI000995CBD7)

HSP 1 Score: 118 bits (296), Expect = 6.140e-30
Identity = 61/128 (47.66%), Postives = 93/128 (72.66%), Query Frame = 1
Query:  109 QLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            ++R+GF+RKVYG+LS+QLL+TFA+G+V +LN +V+  +  N WT+ +    +L +L+ L+  R  +PAN+ LLGA+T  +AYT+GV+     S  + TIV++A  +T+ V LGLT +TFQ+K DFSFL
Sbjct:   41 KIRMGFLRKVYGLLSIQLLMTFAIGAVFILNSSVKLYVQENSWTIGLAFFSTLGILIALMIKRKDHPANLILLGAFTLTQAYTVGVMV----SMFEVTIVLEALFITLTVVLGLTAYTFQSKRDFSFL 164          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: A0A437BNU9_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A437BNU9_CHISP)

HSP 1 Score: 117 bits (294), Expect = 1.140e-29
Identity = 64/133 (48.12%), Postives = 92/133 (69.17%), Query Frame = 1
Query:   94 EDVEKQLRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            ++ +K++RL F+RKVYG+LS+QLL T A+ SV +L   +++ I  N W V++  ILS+V L+ L+  R  YPAN+YLL A+T V+AY+IGVV     S     +V+QA G+T +V  GLTL+T  TK DFSF+
Sbjct:   32 KNADKEIRLAFVRKVYGLLSMQLLATVAISSVFMLVKPIQSFIHTNQWMVFIAFILSIVTLIALIAKRRDYPANLYLLAAFTVVQAYSIGVVV----SFCDTLVVLQALGITFSVVFGLTLYTLNTKRDFSFI 160          
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Match: M2X7J4_GALSU (Transmembrane BAX inhibitor motif containing 4 isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X7J4_GALSU)

HSP 1 Score: 118 bits (295), Expect = 1.220e-29
Identity = 60/127 (47.24%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  112 LRLGFIRKVYGILSLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRDKYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGLTLFTFQTKIDFSFL 492
            +RLGFIRKVYGILSLQL  T  + S+ +LN ++   +L NPW +W+G++ ++  L  L+ Y++++P NMYLLG +TF E++ +  +CA + S G G IV +A  LT  VF  LT + F +K DFSFL
Sbjct:   46 VRLGFIRKVYGILSLQLGFTVFLSSLFMLNQSISMVVLRNPWLLWIGLLATMGALFALVFYKNQHPKNMYLLGIFTFGESFMVATICALFRSAGLGVIVFEAFLLTALVFTSLTAYCFYSKKDFSFL 172          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12441.4956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9C6_ECTSI1.950e-7573.81Homologue of a Golgi anti-apoptotic protein identi... [more]
A0A7S2UZ05_9STRA1.330e-4150.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4HCX1_9EUKA3.300e-3450.39Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A835ZDG7_9STRA1.520e-3347.30Inhibitor of apoptosis-promoting Bax1-domain-conta... [more]
A0A7S3ZLV5_9STRA1.670e-3148.85Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2GPE1_9STRA2.000e-3142.95Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8CB69_THAPS1.540e-3048.78Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
UPI000995CBD76.140e-3047.66protein lifeguard 4-like n=1 Tax=Pseudomyrmex grac... [more]
A0A437BNU9_CHISP1.140e-2948.12Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
M2X7J4_GALSU1.220e-2947.24Transmembrane BAX inhibitor motif containing 4 iso... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12441contigM-pyrifera_M_contig12441:150..7707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue5.7e-59
Seed eggNOG ortholog2880.D7G9C6
Preferred nameTMBIM4
KEGG koko:K06890
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050848,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0098588,GO:0098791,GO:0098827,GO:1902531
EggNOG free text desc.negative regulation of Fas signaling pathway
EggNOG OGsCOG0670@1,KOG2322@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons4
Model size492
Cds size492
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12441.4956.1prot_M-pyrifera_M_contig12441.4956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12441 150..7707 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.0712526-CDS-M-pyrifera_M_contig12441:149..2451622815761.0712526-CDS-M-pyrifera_M_contig12441:149..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 150..245 -
1692277556.9068625-CDS-M-pyrifera_M_contig12441:149..2451692277556.9068625-CDS-M-pyrifera_M_contig12441:149..245Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 150..245 -
1622815761.0824597-CDS-M-pyrifera_M_contig12441:1096..12021622815761.0824597-CDS-M-pyrifera_M_contig12441:1096..1202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 1097..1202 -
1692277556.9246454-CDS-M-pyrifera_M_contig12441:1096..12021692277556.9246454-CDS-M-pyrifera_M_contig12441:1096..1202Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 1097..1202 -
1622815761.0927382-CDS-M-pyrifera_M_contig12441:2660..28291622815761.0927382-CDS-M-pyrifera_M_contig12441:2660..2829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 2661..2829 -
1692277556.9346213-CDS-M-pyrifera_M_contig12441:2660..28291692277556.9346213-CDS-M-pyrifera_M_contig12441:2660..2829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 2661..2829 -
1622815761.1028411-CDS-M-pyrifera_M_contig12441:7586..77071622815761.1028411-CDS-M-pyrifera_M_contig12441:7586..7707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 7587..7707 -
1692277556.9455316-CDS-M-pyrifera_M_contig12441:7586..77071692277556.9455316-CDS-M-pyrifera_M_contig12441:7586..7707Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12441 7587..7707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12441.4956.1

>prot_M-pyrifera_M_contig12441.4956.1 ID=prot_M-pyrifera_M_contig12441.4956.1|Name=mRNA_M-pyrifera_M_contig12441.4956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
DKGEDYEILEAGQRFNDDASAGLAERPWASGEDVEKQLRLGFIRKVYGIL
SLQLLLTFAVGSVCVLNDAVRTGILANPWTVWVGVILSLVLLVCLLCYRD
KYPANMYLLGAWTFVEAYTIGVVCAAYASQGQGTIVIQAAGLTMAVFLGL
TLFTFQTKIDFSFL
back to top

mRNA from alignment at M-pyrifera_M_contig12441:150..7707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12441.4956.1 ID=mRNA_M-pyrifera_M_contig12441.4956.1|Name=mRNA_M-pyrifera_M_contig12441.4956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7558bp|location=Sequence derived from alignment at M-pyrifera_M_contig12441:150..7707- (Macrocystis pyrifera P11B4 male)
GATAAAGGCGAAGACTACGAGATACTCGAGGCGGGTCAGAGGTTCAACGA CGATGCAAGCGCGGGACTCGCGGAAAGGCCGTGGGCATCCGGCGAAGACG TGGAGAAGCAGCTACGCCTGGGTGAGTTTAGTTTCGACCTGAAAACTCAG CAAGGTACTCGTATACTCCTACGATGTCATACTGTTTTGTACGTAAATAT AAGCACTTTATTGGTATAGTAATTAATATAAACGGTCATTATATATCGGT ACAGGTTTTAGTGCAAACCTCAGTAACGTACACTTGGGACCAAACTACTT GGAGTTAGAGGTGAATGTGTTGATGGTGCGGGGGAATGTGTTTGGTACGT TCCTGTGTGGTACAAGGGATCAGGTACACCAGGTATGCCAGGTATTTCCG TTTCTGCTGACTTCTGCCCACTTCGATTTGGGAGCAACGATGCTCTCGCT TGTTGCAGGGACGGAAGACCGCGGCTTGGTGACGCCTTGACTAACCGCCA ACCCCCCCTGCATAACGCAACTATTTATACTTCCGTCGCAGTCTGAATAC GTGCTTGACATACCAAGGACGGGACACCATATCGGTATGCATGAAGGACA GGACACGTGGTGCATAAGAAATCGAGCGATAAGAGCACACAACACGAAAT TGGAACGTGGAAGTGTATTTTTACCAATCCGCCCGAGAATGAAAAAAAAA AAAAAAGCGAAAAAAAATAAGCAAAGGCAGGCTAATATTATTAATGGAGT GTCTGCGCATAATAGAGTGTTGGTACGAAGCGCTTTGTGAAAATTTGACT ATAACGACCACTTGTATTCCCCCGTTACCGACGGATAGCAAATAACTATT TCCGAATTTACTCAAATATGGCCGCGTTATGTATATTTGAAAGGCAAATA TACATAGAGCCAGAAAAATATACATAGAGCCGAATACGACAACGACCACG TGTGACGGTTGGTCTACATCTCCCCGAGCGTCCGTGGTTGGTCAAGCATA CCCGACGAATACTGTGTAGGCGCGACCAAATGGAGCTGGCTGACCATATG AGGCATCTGACCACACGCGCTTGCGTCGTTGCCTCGCGACATCGTTTGAC CTCCGTGTGAAACGGCACGTGTCGAGACGGCCCCCGTGCGATAGGCGTGC GGTCTGAGCCATATGTCACGATGGGGGACTGGGCTGGTGATGTGGAAACG GCGGATTCCCTGCGCTTTTGCGCCTTTTTTGTTCGTTGACCTTGCTGTTT ACAAGACCCGTAGCAACAGCAGCAGCAGCAGCAGCTATAGTTGTGCGCAG AGATGTGGCTGCGGAAAACTCTTCCTCGGCCAGCTCCGGCGAGACAGGCG ACGCACGTCTAGCTGTGGTCGCCGGGTGCAGCTCCTCTGAGGATCAAGTA CGCTTGTCATTCTCTCTGGTGGTTCTCTGTCTCGTTTTCTCGTGCGTAGT GTGTCCGTAGCCGCGCTATTCTATCGTGATCATATACGGGTACCTGGAAC CTTGATACCACGAAAGCTACTTTATTGGGGTGAAAGTACGAGTACACACG TACATACAGCAGGTACAGCATCTTGCTGTGTCGTTTCTGACTGCCTGTTT TTGTTCCTTGCTGCTACGTGTTGGGAGAGAGGCAGGGCACGGAGAAGCGA TGAAACGCAGGCCGCCAGAAGGTTAATTTGCTGTATGCACTCTGTCTGCT GCTTTGCTGCGCTGATGTCGGGTTCGTCGTGGTGCGTTTTTTTGGAGGGC TCGCCGCAGCGCTGTGTATCAAGTCGGACACTCAGGAACAACACGACAAC GGCAGCAACGTTTCATTCGGGTCAAGCGCACAGCGCTCATCCATCGTATA CGAGATTGGTACAGCATACCACGTACTTGCAAATTATTGCACATCGACAC CCATCCGTTCTCGTCTTCCGAGAAGATCTTAAATTCATGCTAAATATTTA GAAATTGGGAAATAAGGGAAAACTCGCGCGGTTCACGAAGTTTGAAAAGT GGAGTATCGACCGATCTGCCAATCGGTTGAACTCACAGCTGACGTGCTTT CTTAGTTTGTTATAATTTTTTTTTTTGATAAAGCGCATGCCGGAGAGACA TCATAAAAGCATTTCGGCACGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGCTTGCTGCTGCTCCCC CCTGCTGTTGATATCGAATCAATTATAACTTGTCTGCTTGTGCTCAAAGC TCGTGATTGTCCCCAATTGTCCCCCAAACTGGACTGCAGTCCTAAAAGGG TTAGTATCTACCACCACCAGCACCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCAGCAGCGGAGGCGGCAGCAGCAGCAGCGTTGTACACGTGGCAGCA TACACATATCACACAGCAGCAGAGACCCCCAGCTCTAAAAATCGCAGGGT CCGATTAAAAAGCAACTACAGAGTAGAAACCAAAGCAAATACGCCGCGGA CAAACTACCGCACACGTGTGATGTTGCTTCCTGCTCTGCTGGCGGGCGGC AGGCGGGTACATCATATGGTTTATAGCCAGCTGGTTGTAGGACGCACCAT GCACTGATGCTCGTGTGCCGTTTGTCGTCTATAGTGTCTGTCACGCACAT AATGCGAAGACGAAAAAAAAAATAATGGGAACTATTACGTGGGTCCATAG TTAACAGGACCTATGGTATACATGAAAACCTATATATTTACCTATTTTTA CTAACAATATTTGGTCCTGTTTACTATGGTCCCCCGTAATAGACATGATC TCTGCGAGGATCAGCCTACCGTTGCAGCGCCTTCGAGTCCCCAAATCGGG CATCGTGACCATTTGACCGTGTTACGAAAGGTCCACATTATTGTTTTCAG CGGCGCGCACACCGGGCGCACACGCAAAACACAACAGAAGAGTGAGAGAG GTGGTGATGAAGGATGGCGGATGACGGATCGCAGCCTCCGATAAAGCAGC TAGCCGCGGCAGTACGCCGTACGCGCGTGGTGTTTCTGGCCGCTGCTGGT GCTTTTGGGCGGGGTTAGTAATGTCGTTGGCATTGCGTGCATTGTAGCTG TTGTCTACGGTACATAGATGTCTGCTGTGTGCTCGGGGCAAGAAACGCAA ACATCGGAAACAGAAGGACGTTTGAAGTATTCATATTCAATCCAAACGGT GCTTATATTTCCGTTAAGAGTTACCGTGGGCCTGTCACGGGCGTATAGCA GCAGCGAAGAAGACATGTAGTTGGTGGATTGCGCACCGCAGGCTCCGACG AACACAACTAGCCACCAGCAGTACAGCAGCGCAGAGGGGTGGGTCACACA CGCACGGTGTTGGCTGCTGGCGCTTTATGGGCAGCAGCGTTGTGACGTCT TGTGTACATGTTGAAGTACAGCAGTACTACGCGCTGCTGGTTCCTGATAC CAAGGTGCTCCGGGTTCGGTCGTGCGGCTTTCAAGATAGATGCTGTGCTG CTCGTACCTCCTTTCTGTTGTGGTTGTCCTTTTTACGTGTATTTCGGTGG GATTGTTTCCTTTAGATAGATACTGCACTATTAATGGATGCACTACACCG CGGAAGATGCAAGCAGATGCAGCTGCTGGACTCGGTGGGTGTTGATTAGG AGCCCGCCGGGACAGAGAGAAGCGTACAGCGAACGACCAAGCGCTGTGTA CGATGACGACGCTCGCGGCAAATAAGTGAGAACTAGATCGTCCGGTAAAA TGCAACTGTATATTTCCCCGAAACTTCCCCGAAACTTTCCGGAAACTTTC TGGAAATGTTCTATCGGATATGATGTGAACGCTATGATACTAAAATATGT TGGGTTGAAACTGCTGCTGCTTTTGCTGCCGTTTTTAAGGGGGCAAGAGC CCCCCCCCACACCTCAAACGCACAAACAAATAAACGAAACAGACGTCGAA CGACAAAAGACAAGAGGCACGGGGCGAACAGTCTCCCAGCTTTTCGTCGT GTAAAGCCGGACGGATACGGAATTCCGTTGGCGCTTTCAGCCTACAATAC AATACTTGGAAACTGTTTGTGAGGGGTATTGGGTGCACAGCTAGCGTATA TCTGCCCGTTCAAGAGAAGTTCTTTGGACGTGCCCAAACAAATGCTGGTC TACTCGTGCTGACGGAGGGTTTGGTAATGAAACTGTGATGGATTTTTCCC GCGATGGTGAGATTCTTTCCGGCCCCGACTGACGGCGGCCACCACCCCGA CCCGGGACTCTAATCCTCACCAGAGGCGTGCTGTGTTGGTCGTTGTCCTT GTAGCTCTGCTGTTCGGACACATGAGATGAAGCTCGTCTGAACGGGCAGA GCTACGCGAACTCGTCGGGTGCAGGGTGTGGGGTGTAGGGTCTCTTTGTT CTTTCCCGGCTCAGCCTGACTAACCATTAAAGTTTCTTGGTGCACACCTC GGCGGAGGTGTCTTTTCTCAGCTCAACCTGACCAACAATTAAGGTTTCTT GGTGCATATCTCGGCAGTAGTGAAACATTTTACGGCCTCGATTTCCCCTC GTCCTAGACTATTTCCGATGTGCGCGGAGCCGCAAGCGGGCGTCAGCCCG CTGAGTATAAGCTTTTTTTTTTTAACATGGAAATACGCACAAAATACAAT GTTTCCACGGCCTTGAAACTGTTGTGCAACGTTGGAGGTGTCTCTGTTAG AAGTACCAGCGGTGCTCCGCCTCGAAAGGGATGCGTGGTCAATCATCAGA TGGCTACAGTGAGACGGGCAACAGATGAGTCCACCCCCTCTTCCTTCCCC CCCCCCCTCCCCCATGAAACGTTATCAGGCTTTATCCGCAAGGTCTATGG AATCCTGTCGCTGCAGCTTCTGCTTACCTTTGCGGTAGGGTCGGTGTGCG TCCTCAACGACGCGGTTCGAACCGGCATCCTGGCGAACCCCTGGACCGTC TGGGTGGGCGTGATTTTGTCGCTCGTGTTGCTGGTGTGCCTCCTCTGGTG AGCTGTAAAGTTGTGATCTCTAGTGCCGGTTTGTGTGCGCCAGACCACAT GACCGCCACTAATAGCTCAACCCTACGTCGGGGTGGTTTCTATTTTTTCG GTTGGGTCGGGATACCAACCCATGACTTTGTTTCTGCTGAGGTGAGAAAG ATGAGTGAAATGTCACGGTTTCTGCCTATTATTACGGGGGACCATAGTGA GTAAGACCAAGTACTGTTATTACCGAGGTCCATAGTTAACGGGACCAAAT TTTGTTAGTAAAAATAGGCAAATATATAGGTTTTTATGTACACCATAGGT CCTGTTAACTATGGACCCCCGTAATAGTAAAAATAGGTAAATATATAGGT TTTTATAGGTTGTGTGTACCGTAGGTCCTATTTACTATGGCCCCCCGTAG TAGTAGTAAGCATTGTTGGGTTGGGTAACTCTGTGGGTTTGTTCGCAAAC GGAGCAGCTCCAGATTAACCCGTTTAACCAATCAGCTCCTCGTGTTTGTC GGTTTCAAGGAGGTTCGACCAATCAGCCCATCATGTTTGTCGGTTTCAAA TAGGTTCAACCAATCAGCTCCTCATGTTTATCGGTTTCTAATATAGGGTC GACCAATCAGCCCGTCATGTTTGTCTGTTTCAAATAGATTCAACCGATCA GCTCCTGATGTGTTGGTTTCGAATAGGTTCGACCAATCAGCTCCTCTTGT TTGTTGGCTCTTGTTTGTTGGTTTCAATTAGGTTTATACAGCCCATGCCC AATTGGATTATCCCAAACACACTATACGTGCAGTACTGTTCCCTCTATAG TGCCGACGTATATGCAGCAGACAACAACACCGGTACTACTCTTGGCCGCA TCCGGCACTAACTACTCCGCAGGCCACGGTACCGAGACTGATGAATCCCA CATGTGTCGAGCGCTTTCACTGGCAATATAGCGGGCAACCGGCACTGTAG AGGGACCACTACTTTAAGCACTAACCCTGACCCCTCCTTGTGCATGTCGC GGGGGTGGGGGTCCATGGGGTTGTGATTATGTTGTGATGTGTATGTTGAT GTTGATGTGATATGATTTGGTATAAGGTGACAGAAGATGGGGTGTTTTTT TTTGTATGATCTATGGGACCTGGTACGAAAATACATGAATTTGTTTTTTC GGTGTGGTACTTCGAAGTACAGTATGGTATGACGTGCTTACCACACATTA TTGCGGGGCTCCATATTAAAAACGACCTAAGGTACTCACAAAAGCCTATA TATTTCGTTTTTTTTGCTAACAATATTTGGTCCTATTTACTAGGGTCCCG CGTAATCGTATACATGATCCACATGTCACTTTTGTTTTTTTTTCGCGGTT TTTTAAATTATTTTATTTCTTGTTGCTCTCGTTTTGGCTTATTAACCATT TCCGCCTGTTGCGGCTCTCTGCCTGTCCTCGTTCTCCTGTCCTCCGCTGC GCCAGCTACCGAGACAAGTACCCCGCCAACATGTACCTATTAGGGGCGTG GACTTTCGTTGAGGCGTACACAATCGGGGTTGTTTGCGCCGCGTACGCCA GCCAAGGACAGGTATGTCGATCTACCCCCACCCCCTTTCCCCCCCGCCCC TCCCCGCCCCCCCACCGCACCGACCTCGGTGAAAGCCCGACGTGCTCCGT TCCGTCCCCCGGCATTGTCGGGATGAGAGGGTTTATAGTTGTACGGGCAC GGCCATTCTTGAACACGAGCATCCCCCGCCCCTCTCTTACGATGGTACAA CTACGGTCGTGCATGTACAAGGAGGAACGGGATGTGTCGGAGGAGATGTG AGGGATATAGAAGAGTGTGACATGGAGAAATTTTGTACGCTAGATGGTTG GGAGAAAAATGGTCGCTATCCTAGGAGATGAGACGGTGGCCACAGGCGGC GAAACAGGGAGGGGAAGAGACTACAAGAACGTTTCTATGTAATACATGGA AACGACGTATTGAGCGCCGAACTGTTGGAGATGTCTCTTATCAGGAGTAG GAACGGTGCTCCGTCTCGAACCGGATGTTTGATCAATGATCAAATGACCG AGGCAAGCGACAAAAGAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNGAAGC TGCTCTTAGCCGGAGTAGGACGGGGGCCCCCCCCCCACCCGCATTTTTTA CCAATCACCAAAGCCCCGCGCCACCCCACAAAACCCCCCCCCCCCCCCCC CGCCCCCCTCCCCCTTTCCTCACCCACCGCCCCATTCCCATCGCTTGTTT CTATTCAATTTCTCCCCTACCCCGCCCTGCCCTCCCCTCCCCTTCGTCGA AACCCTTTATTTCGATGTGCCATGCTGTACACGCGTTCTATTGCTGTCTA TTTTATGCGCAGGGAACGATCGTCATACAGGCGGCGGGTTTAACGATGGC GGTTTTCCTTGGGCTGACGTTGTTCACCTTTCAAACGAAGATAGACTTTT CCTTCCTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12441:150..7707-

>mRNA_M-pyrifera_M_contig12441.4956.1 ID=mRNA_M-pyrifera_M_contig12441.4956.1|Name=mRNA_M-pyrifera_M_contig12441.4956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig12441:150..7707- (Macrocystis pyrifera P11B4 male)
GATAAAGGCGAAGACTACGAGATACTCGAGGCGGGTCAGAGGTTCAACGA
CGATGCAAGCGCGGGACTCGCGGAAAGGCCGTGGGCATCCGGCGAAGACG
TGGAGAAGCAGCTACGCCTGGGATAAAGGCGAAGACTACGAGATACTCGA
GGCGGGTCAGAGGTTCAACGACGATGCAAGCGCGGGACTCGCGGAAAGGC
CGTGGGCATCCGGCGAAGACGTGGAGAAGCAGCTACGCCTGGGCTTTATC
CGCAAGGTCTATGGAATCCTGTCGCTGCAGCTTCTGCTTACCTTTGCGGT
AGGGTCGGTGTGCGTCCTCAACGACGCGGTTCGAACCGGCATCCTGGCGA
ACCCCTGGACCGTCTGGGTGGGCGTGATTTTGTCGCTCGTGTTGCTGGTG
TGCCTCCTCTGGCTTTATCCGCAAGGTCTATGGAATCCTGTCGCTGCAGC
TTCTGCTTACCTTTGCGGTAGGGTCGGTGTGCGTCCTCAACGACGCGGTT
CGAACCGGCATCCTGGCGAACCCCTGGACCGTCTGGGTGGGCGTGATTTT
GTCGCTCGTGTTGCTGGTGTGCCTCCTCTGCTACCGAGACAAGTACCCCG
CCAACATGTACCTATTAGGGGCGTGGACTTTCGTTGAGGCGTACACAATC
GGGGTTGTTTGCGCCGCGTACGCCAGCCAAGGACAGCTACCGAGACAAGT
ACCCCGCCAACATGTACCTATTAGGGGCGTGGACTTTCGTTGAGGCGTAC
ACAATCGGGGTTGTTTGCGCCGCGTACGCCAGCCAAGGACAGGGAACGAT
CGTCATACAGGCGGCGGGTTTAACGATGGCGGTTTTCCTTGGGCTGACGT
TGTTCACCTTTCAAACGAAGATAGACTTTTCCTTCCTGGGAACGATCGTC
ATACAGGCGGCGGGTTTAACGATGGCGGTTTTCCTTGGGCTGACGTTGTT
CACCTTTCAAACGAAGATAGACTTTTCCTTCCTG
back to top