prot_M-pyrifera_M_contig124400.4955.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig124400.4955.1
Unique Nameprot_M-pyrifera_M_contig124400.4955.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length122
Homology
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BLAST of mRNA_M-pyrifera_M_contig124400.4955.1 vs. uniprot
Match: A0A7Y3LGH0_9ACTN (Rod shape-determining protein MreD n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7Y3LGH0_9ACTN)

HSP 1 Score: 51.6 bits (122), Expect = 1.560e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 0 
Query:    1 VRIDIPLILIVAVGFVDNPSDAAILGFVTDLLLDTLQFGPFGLSALVYCLAGWL 54
            V +D+PL+L++  GF +     A++GF   LL D     PFGLSALVY L G++
Sbjct:   31 VHLDLPLLLVICAGFSEGREGGAVIGFAVGLLSDGFLITPFGLSALVYSLIGYI 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124400.4955.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y3LGH0_9ACTN1.560e-544.44Rod shape-determining protein MreD n=1 Tax=Acidimi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 122..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 103..121
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableTMHMMTMhelixcoord: 102..119
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 44..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124400contigM-pyrifera_M_contig124400:2..367 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124400.4955.1mRNA_M-pyrifera_M_contig124400.4955.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig124400 2..367 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig124400.4955.1 ID=prot_M-pyrifera_M_contig124400.4955.1|Name=mRNA_M-pyrifera_M_contig124400.4955.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
VRIDIPLILIVAVGFVDNPSDAAILGFVTDLLLDTLQFGPFGLSALVYCL
AGWLIVLARLRVLQAGASFRTVQGATIVMLVTAATWAAGMIFGLRAIPLD
PTAIARLALVGLVGAVLVHPMI
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