mRNA_M-pyrifera_M_contig124396.4954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124396.4954.1
Unique NamemRNA_M-pyrifera_M_contig124396.4954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A0S7EYR1_9TELE (XPO6 n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7EYR1_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 3.320e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QPS EG+ ACLDI+   LD +
Sbjct:  148 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPSHEGYFACLDIWSVFLDFL 216
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BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A0S7EUI0_9TELE (XPO6 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A0S7EUI0_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 4.400e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QPS EG+ ACLDI+   LD +
Sbjct:  148 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPSHEGYFACLDIWSVFLDFL 216
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BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A0S7ETY1_9TELE (XPO6 n=3 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ETY1_9TELE)

HSP 1 Score: 80.1 bits (196), Expect = 5.930e-16
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QPS EG+ ACLDI+   LD +
Sbjct:  148 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPSHEGYFACLDIWSVFLDFL 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: XPO6_DANRE (Exportin-6 n=34 Tax=Otophysi TaxID=186626 RepID=XPO6_DANRE)

HSP 1 Score: 80.1 bits (196), Expect = 6.030e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + DL  S+V KFT+F  LFVS HLRR +SN  FP+  F  LL +YTF QPS EG++ACLDI+   LD +
Sbjct:  368 LQDLDESYVEKFTDFLRLFVSVHLRRIESNAQFPLVEFLALLFKYTFNQPSHEGYLACLDIWSVFLDYL 436
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BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: UPI001BF40B86 (exportin-6 isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI001BF40B86)

HSP 1 Score: 79.3 bits (194), Expect = 1.130e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +SN  FP+  F GLL +YTF QP+ EG++ACLDI+   LD M
Sbjct:  370 LQELDESYLEKFTDFLRLFVSVHLRRIESNAQFPLVEFLGLLFKYTFNQPTHEGYLACLDIWSIFLDYM 438
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A6I9MSV3_9TELE (exportin-6 n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9MSV3_9TELE)

HSP 1 Score: 79.0 bits (193), Expect = 1.530e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QP+ EG+ ACLDI+   LD +
Sbjct:  386 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPTHEGYFACLDIWSVFLDFL 454
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A8C2XSS3_CYCLU (Exportin 6 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2XSS3_CYCLU)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QP+ EG+ ACLDI+   LD +
Sbjct:  351 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPTHEGYFACLDIWSVFLDFL 419
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A672G6E0_SALFA (Importin N-terminal domain-containing protein n=47 Tax=Percomorphaceae TaxID=1489872 RepID=A0A672G6E0_SALFA)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-15
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + +L  S++ KFT+F  LFVS HLRR +S+P FP+  F GLL +YTF QP+ EG+ ACLDI+   LD +
Sbjct:  386 LQELDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLGLLFKYTFNQPTHEGYFACLDIWSVFLDFL 454
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: UPI0013F21A6B (exportin-6-like n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=UPI0013F21A6B)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-15
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   13 ACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            +CS++ KFT+F  LFVS HLRR +S   FP+  F  LL +YTF QP+ EG+ +CLDI+   LD +
Sbjct:    6 SCSYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLALLFKYTFHQPTHEGYFSCLDIWTLFLDYL 70
[Close]
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Match: A0A4W6ES94_LATCA (Exportin 6 n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6ES94_LATCA)

HSP 1 Score: 78.2 bits (191), Expect = 2.870e-15
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQPSLEGFMACLDIYDALLDIM 207
            + DL  S++ KFT+F  LFVS HLRR +S+P FP+  F  LL +YTF QP+ EG+ ACLDI+   LD +
Sbjct:  352 LQDLDESYLEKFTDFLRLFVSVHLRRIESSPQFPIVEFLALLFKYTFNQPTHEGYFACLDIWSVFLDFL 420
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124396.4954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7EYR1_9TELE3.320e-1653.62XPO6 n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A0S7EUI0_9TELE4.400e-1653.62XPO6 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A... [more]
A0A0S7ETY1_9TELE5.930e-1653.62XPO6 n=3 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
XPO6_DANRE6.030e-1655.07Exportin-6 n=34 Tax=Otophysi TaxID=186626 RepID=XP... [more]
UPI001BF40B861.130e-1553.62exportin-6 isoform X1 n=5 Tax=Alosa TaxID=34772 Re... [more]
A0A6I9MSV3_9TELE1.530e-1552.17exportin-6 n=1 Tax=Notothenia coriiceps TaxID=8208... [more]
A0A8C2XSS3_CYCLU1.540e-1552.17Exportin 6 n=1 Tax=Cyclopterus lumpus TaxID=8103 R... [more]
A0A672G6E0_SALFA1.540e-1552.17Importin N-terminal domain-containing protein n=47... [more]
UPI0013F21A6B1.840e-1550.77exportin-6-like n=1 Tax=Chelonoidis abingdonii Tax... [more]
A0A4W6ES94_LATCA2.870e-1552.17Exportin 6 n=1 Tax=Lates calcarifer TaxID=8187 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124396contigM-pyrifera_M_contig124396:60..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.6
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog7955.ENSDARP00000099636
Preferred nameXPO6
KEGG koko:K15001
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007611,GO:0007613,GO:0007614,GO:0007626,GO:0007628,GO:0007629,GO:0008104,GO:0008150,GO:0008344,GO:0008565,GO:0015031,GO:0015833,GO:0016020,GO:0016319,GO:0030534,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048036,GO:0048513,GO:0048731,GO:0048856,GO:0050877,GO:0050890,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060322,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0090659
EggNOG free text desc.Exportin 6
EggNOG OGs39RM0@33154,3BDGE@33208,3CXNJ@33213,4834I@7711,4957T@7742,49XUV@7898,COG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00199,ko01000
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.9992702-CDS-M-pyrifera_M_contig124396:59..2661622815760.9992702-CDS-M-pyrifera_M_contig124396:59..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124396 60..266 +
1692277556.884574-CDS-M-pyrifera_M_contig124396:59..2661692277556.884574-CDS-M-pyrifera_M_contig124396:59..266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124396 60..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124396.4954.1prot_M-pyrifera_M_contig124396.4954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124396 60..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124396.4954.1

>prot_M-pyrifera_M_contig124396.4954.1 ID=prot_M-pyrifera_M_contig124396.4954.1|Name=mRNA_M-pyrifera_M_contig124396.4954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
VSDLACSFVSKFTEFTLLFVSKHLRRSQSNPDFPMEAFFGLLQRYTFGQP
SLEGFMACLDIYDALLDIM
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mRNA from alignment at M-pyrifera_M_contig124396:60..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124396.4954.1 ID=mRNA_M-pyrifera_M_contig124396.4954.1|Name=mRNA_M-pyrifera_M_contig124396.4954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig124396:60..266+ (Macrocystis pyrifera P11B4 male)
GTGTCTGACCTTGCGTGTAGTTTCGTGAGCAAATTCACAGAGTTCACACT
GCTGTTTGTGTCAAAACACCTGCGACGGTCGCAGTCAAACCCCGACTTTC
CCATGGAGGCCTTCTTCGGCCTTCTCCAGCGGTATACCTTTGGGCAGCCG
TCGTTGGAAGGTTTCATGGCGTGCCTAGATATCTATGACGCACTCCTCGA
TATCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124396:60..266+

>mRNA_M-pyrifera_M_contig124396.4954.1 ID=mRNA_M-pyrifera_M_contig124396.4954.1|Name=mRNA_M-pyrifera_M_contig124396.4954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig124396:60..266+ (Macrocystis pyrifera P11B4 male)
GTGTCTGACCTTGCGTGTAGTTTCGTGAGCAAATTCACAGAGTTCACACT
GCTGTTTGTGTCAAAACACCTGCGACGGTCGCAGTCAAACCCCGACTTTC
CCATGGAGGCCTTCTTCGGCCTTCTCCAGCGGTATACCTTTGGGCAGCCG
TCGTTGGAAGGTTTCATGGCGTGCCTAGATATCTATGACGCACTCCTCGA
TATCATGGTGTCTGACCTTGCGTGTAGTTTCGTGAGCAAATTCACAGAGT
TCACACTGCTGTTTGTGTCAAAACACCTGCGACGGTCGCAGTCAAACCCC
GACTTTCCCATGGAGGCCTTCTTCGGCCTTCTCCAGCGGTATACCTTTGG
GCAGCCGTCGTTGGAAGGTTTCATGGCGTGCCTAGATATCTATGACGCAC
TCCTCGATATCATG
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