mRNA_M-pyrifera_M_contig124281.4947.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124281.4947.1
Unique NamemRNA_M-pyrifera_M_contig124281.4947.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7K1Z813_9ACTN (Branched-chain amino acid ABC transporter permease n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z813_9ACTN)

HSP 1 Score: 125 bits (313), Expect = 1.550e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPD-GLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            +YGSIIGAL+ITA+PRFI+G       I  D G+PGVA K++D GLV+ +SLNVIIYGFLIALFLLVE RGLAGIW RIR+YFSTWPFSY
Sbjct:  296 IYGSIIGALVITALPRFIDG-------ISADYGVPGVAAKSTDSGLVSVASLNVIIYGFLIALFLLVEHRGLAGIWVRIRNYFSTWPFSY 378          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A2E6VLG1_9ACTN (Branched-chain amino acid ABC transporter permease n=10 Tax=root TaxID=1 RepID=A0A2E6VLG1_9ACTN)

HSP 1 Score: 89.7 bits (221), Expect = 3.020e-19
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSD-PGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            ++GSIIGA ++ ++PRF+E      D      LPGV+       G+++ SSLN IIYG LIA FLL+E RG+AGIW R+++YF TWPFSY
Sbjct:  296 IHGSIIGAFVLGSLPRFVENISRDYD------LPGVSGDQGGIGGMISISSLNHIIYGILIAAFLLLEPRGIAGIWMRVKTYFKTWPFSY 379          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A076MH80_AMYME (Branched chain amino acid ABC superfamily ATP binding cassette transporter, membrane protein n=8 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A076MH80_AMYME)

HSP 1 Score: 85.9 bits (211), Expect = 7.050e-18
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            ++GS++GAL + A+P  I+         + D +PGV     D G ++  +LN  I+G LI LFL++E RGLAGIW RI++YF  WPFSY
Sbjct:  285 IFGSVLGALFVGALPALIDR--------YSDVIPGVQTSVGDSGFISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRIKTYFKAWPFSY 365          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A2E8E9P9_9BACT (Branched-chain amino acid ABC transporter permease n=3 Tax=Bacteria TaxID=2 RepID=A0A2E8E9P9_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 2.850e-17
Identity = 47/90 (52.22%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAV-KNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            V+GSIIGAL + A+PR I+G     D      LPGV   K    G+++ SSLN +I+G LIA FLL+E RG+AGI  R+R+YF  WPFSY
Sbjct:  296 VHGSIIGALFVGALPRVIDGLAKDYD------LPGVGGDKGGLEGILSVSSLNQVIFGLLIAGFLLLEPRGIAGILARVRAYFKAWPFSY 379          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: H5XC00_9PSEU (ABC-type branched-chain amino acid transport system, permease component n=2 Tax=Saccharomonospora TaxID=1851 RepID=H5XC00_9PSEU)

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-16
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            ++G+++GA+ + A+P  I+         + D +PGV       G ++  +LN  ++G LI LFL++E RGLAGIW R+++YF TWPFSY
Sbjct:  284 IFGAVLGAVFVGALPALIDR--------YSDAIPGVRTSVGGDGFISVFALNQALFGVLIVLFLVLEPRGLAGIWLRVKTYFKTWPFSY 364          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: UPI001670DE83 (branched-chain amino acid ABC transporter permease n=1 Tax=Actinokineospora fastidiosa TaxID=1816 RepID=UPI001670DE83)

HSP 1 Score: 82.4 bits (202), Expect = 1.310e-16
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            ++G+++GA+ + A+P  I+         + D +PGV       G ++  +LN  I+G LI +FL+VE RGLAGIW RI++YF TWPFSY
Sbjct:  285 IFGAVLGAIFVGALPALIDR--------YSDVIPGVQTSVGGDGFISVFALNQAIFGVLIVVFLVVEPRGLAGIWLRIKTYFRTWPFSY 365          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A1I5TGH5_9PSEU (Branched-chain amino acid transport system permease protein n=1 Tax=Amycolatopsis arida TaxID=587909 RepID=A0A1I5TGH5_9PSEU)

HSP 1 Score: 82.0 bits (201), Expect = 1.820e-16
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            V+GS++GA+ + A+P  I+         +   +PGV       GL++  +LN  I+G LI LFL++E RGLAGIW R+++YF  WPFSY
Sbjct:  285 VFGSVLGAIFVGALPALIDR--------YSAAIPGVRTSVGGDGLISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRVKNYFKAWPFSY 365          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7G7MBZ2_9PSEU (Branched-chain amino acid ABC transporter permease n=1 Tax=Pseudonocardia sp. CGMCC 4.1532 TaxID=2761535 RepID=A0A7G7MBZ2_9PSEU)

HSP 1 Score: 82.0 bits (201), Expect = 2.190e-16
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            V G I+GAL + A+P  I+         + D +PGV+      G ++ S+LN  ++G LI +FL+VE RGLAGIW R+++YF++WPFSY
Sbjct:  319 VMGPILGALFVGALPALIDR--------YSDVIPGVSDGVGSDGFISVSALNQAVFGLLIVVFLVVEPRGLAGIWLRVKAYFTSWPFSY 399          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A4V2ERQ2_9PSEU (Amino acid/amide ABC transporter membrane protein 2 (HAAT family) n=1 Tax=Herbihabitans rhizosphaerae TaxID=1872711 RepID=A0A4V2ERQ2_9PSEU)

HSP 1 Score: 80.9 bits (198), Expect = 4.920e-16
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            ++GS++GA+ + A+P  I+         + + LPGV       G ++  +LN  I+G LI LFL++E RGLAGIW RI++YF  WPFSY
Sbjct:  289 IFGSVLGAIFVGALPALIDR--------YSEYLPGVQTGVGGEGFISVFALNQAIFGLLIVLFLVLEPRGLAGIWLRIKAYFKAWPFSY 369          
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Match: A0A7X7S5C2_9ACTO (Branched-chain amino acid ABC transporter permease n=1 Tax=Actinomycetales bacterium TaxID=1911520 RepID=A0A7X7S5C2_9ACTO)

HSP 1 Score: 78.6 bits (192), Expect = 1.280e-15
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSSLNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY 267
            + GS+IGA  +  MPR +E   P L            V     GL+T   L  I++G LI LFL++E RGL G+W RIR+YF+TWPFSY
Sbjct:  185 ISGSLIGAAFVVLMPRLLEWLAPWLPF----------VSTGSGGLITIFQLQSILFGLLIVLFLILEPRGLFGLWHRIRTYFTTWPFSY 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124281.4947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1Z813_9ACTN1.550e-3272.22Branched-chain amino acid ABC transporter permease... [more]
A0A2E6VLG1_9ACTN3.020e-1951.11Branched-chain amino acid ABC transporter permease... [more]
A0A076MH80_AMYME7.050e-1844.94Branched chain amino acid ABC superfamily ATP bind... [more]
A0A2E8E9P9_9BACT2.850e-1752.22Branched-chain amino acid ABC transporter permease... [more]
H5XC00_9PSEU1.300e-1640.45ABC-type branched-chain amino acid transport syste... [more]
UPI001670DE831.310e-1642.70branched-chain amino acid ABC transporter permease... [more]
A0A1I5TGH5_9PSEU1.820e-1642.70Branched-chain amino acid transport system permeas... [more]
A0A7G7MBZ2_9PSEU2.190e-1643.82Branched-chain amino acid ABC transporter permease... [more]
A0A4V2ERQ2_9PSEU4.920e-1642.70Amino acid/amide ABC transporter membrane protein ... [more]
A0A7X7S5C2_9ACTO1.280e-1544.94Branched-chain amino acid ABC transporter permease... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124281contigM-pyrifera_M_contig124281:250..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.3
Seed ortholog evalue3.1e-14
Seed eggNOG ortholog1068978.AMETH_0141
KEGG koko:K01998
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the binding-protein-dependent transport system permease family
EggNOG OGs2GMGD@201174,4DYYG@85010,COG4177@1,COG4177@2
COG Functional cat.E
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons1
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815760.3936179-CDS-M-pyrifera_M_contig124281:249..5191622815760.3936179-CDS-M-pyrifera_M_contig124281:249..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124281 250..519 -
1692277556.551248-CDS-M-pyrifera_M_contig124281:249..5191692277556.551248-CDS-M-pyrifera_M_contig124281:249..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124281 250..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124281.4947.1prot_M-pyrifera_M_contig124281.4947.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124281 250..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124281.4947.1

>prot_M-pyrifera_M_contig124281.4947.1 ID=prot_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
VYGSIIGALLITAMPRFIEGGIPILDTIFPDGLPGVAVKNSDPGLVTTSS
LNVIIYGFLIALFLLVEQRGLAGIWQRIRSYFSTWPFSY*
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mRNA from alignment at M-pyrifera_M_contig124281:250..519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124281.4947.1 ID=mRNA_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig124281:250..519- (Macrocystis pyrifera P11B4 male)
GTCTACGGGTCGATCATCGGCGCTCTCCTCATCACCGCCATGCCGCGCTT CATCGAGGGTGGCATCCCGATTCTCGACACCATCTTCCCCGACGGACTCC CGGGCGTGGCGGTCAAGAACTCCGATCCCGGGCTGGTGACGACGTCATCG CTCAACGTGATCATCTACGGTTTCCTGATCGCCCTCTTCCTGCTCGTGGA GCAGCGAGGGCTCGCCGGAATCTGGCAACGCATTCGCAGCTACTTCTCGA CCTGGCCGTTCTCGTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124281:250..519-

>mRNA_M-pyrifera_M_contig124281.4947.1 ID=mRNA_M-pyrifera_M_contig124281.4947.1|Name=mRNA_M-pyrifera_M_contig124281.4947.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig124281:250..519- (Macrocystis pyrifera P11B4 male)
GTCTACGGGTCGATCATCGGCGCTCTCCTCATCACCGCCATGCCGCGCTT
CATCGAGGGTGGCATCCCGATTCTCGACACCATCTTCCCCGACGGACTCC
CGGGCGTGGCGGTCAAGAACTCCGATCCCGGGCTGGTGACGACGTCATCG
CTCAACGTGATCATCTACGGTTTCCTGATCGCCCTCTTCCTGCTCGTGGA
GCAGCGAGGGCTCGCCGGAATCTGGCAACGCATTCGCAGCTACTTCTCGA
CCTGGCCGTTCTCGTACTGAGTCTACGGGTCGATCATCGGCGCTCTCCTC
ATCACCGCCATGCCGCGCTTCATCGAGGGTGGCATCCCGATTCTCGACAC
CATCTTCCCCGACGGACTCCCGGGCGTGGCGGTCAAGAACTCCGATCCCG
GGCTGGTGACGACGTCATCGCTCAACGTGATCATCTACGGTTTCCTGATC
GCCCTCTTCCTGCTCGTGGAGCAGCGAGGGCTCGCCGGAATCTGGCAACG
CATTCGCAGCTACTTCTCGACCTGGCCGTTCTCGTACTGA
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