mRNA_M-pyrifera_M_contig124260.4942.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: UPI00037273A4 (ABC transporter permease n=1 Tax=Candidatus Microthrix parvicella TaxID=41950 RepID=UPI00037273A4) HSP 1 Score: 125 bits (314), Expect = 1.130e-33 Identity = 68/97 (70.10%), Postives = 80/97 (82.47%), Query Frame = 1
Query: 7 AAAFAGATGAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGTAAIAALGMWALIPAMIGLVAVQRRDVV 297
AAAFAGA GAV GAG I+RSVGGAV TT+ L+I PPL+VQ+A++T SWMP++LANVLAG GTDVS AA+AAL WAL+PA IGL AV+RRDVV
Sbjct: 152 AAAFAGAAGAVFGAGFGSIVRSVGGAVTGTTIALIIAPPLIVQMANDTASWMPNILANVLAGAGTDVSTPAALAALAAWALVPAAIGLWAVERRDVV 248
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: A0A351ESW7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ESW7_9ACTN) HSP 1 Score: 100 bits (249), Expect = 1.090e-25 Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 31 GAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGTAAIAALGMWALIPAMIGLVAVQRRDV 294
GAV G G+ ++R+VGGAV + L++ PPL+VQLA+ T SWMP+ LA VLAGV TDVSG AA+AAL WAL+ +GLVAVQRRDV
Sbjct: 3 GAVFGVGIGAVVRNVGGAVTGVVLMLIVAPPLIVQLANSTASWMPNSLALVLAGVTTDVSGPAAVAALSAWALVSTGVGLVAVQRRDV 90
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: A0A4Q2T474_9ACTN (Uncharacterized protein n=1 Tax=Nocardioides zhouii TaxID=1168729 RepID=A0A4Q2T474_9ACTN) HSP 1 Score: 98.6 bits (244), Expect = 3.260e-23 Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 1 VAAAAFAGATGAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGTAAIAALGMWALIPAMIGLVAVQRRDVV 297
+AA FAGA GAVLGAGL IIR+VGGAV + L ++PPL QL +E GSW+P L V++GV VS AA+ A+ WAL+PA +GLVAVQRRDVV
Sbjct: 150 LAATTFAGAIGAVLGAGLGSIIRNVGGAVTVAVLVLFVIPPLAAQLVAEAGSWIPPTLFAVISGVDAAVSLGAALVAITAWALVPAGLGLVAVQRRDVV 248
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: UPI000B4C0712 (hypothetical protein n=1 Tax=Kineosporia sp. A_224 TaxID=1962180 RepID=UPI000B4C0712) HSP 1 Score: 95.1 bits (235), Expect = 6.910e-22 Identity = 56/96 (58.33%), Postives = 71/96 (73.96%), Query Frame = 1
Query: 7 AAAFAGATGAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGTAAIAALGMWALIPAMIGLVAVQRRDV 294
A+A AGA GAVLGAGL +IR+ GGAV A + + + PPLVVQLA SW+P+ L VL+GV +DVS AA+ A+ WAL+PA+ GLV+VQRRDV
Sbjct: 152 ASAAAGAIGAVLGAGLGTVIRNTGGAVTAAVLVVFLAPPLVVQLAGAAVSWIPTALLAVLSGVSSDVSIWAALLAVAAWALVPAVAGLVSVQRRDV 247
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: UPI001E4B3DCB (hypothetical protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E4B3DCB) HSP 1 Score: 94.4 bits (233), Expect = 1.390e-21 Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 1 VAAAAFAGATGAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGTAAIAALGMWALIPAMIGLVAVQRRDVV 297
+AA+ GA GAVLGAG+ ++R+ GGAV + L++ PPLVVQLAS T SWMP+ LA+VL+GV T+V +A AA+ WA +PA + ++AV+RRDVV
Sbjct: 150 LAASTLCGAAGAVLGAGIGTLVRNTGGAVTGAVLVLLVAPPLVVQLASGTASWMPATLASVLSGVTTEVGIASAAAAICGWAAVPAALAILAVRRRDVV 248
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Match: A0A7X5WLK0_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WLK0_9ACTN) HSP 1 Score: 94.4 bits (233), Expect = 1.450e-21 Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 VAAAAFAGATGAVLGAGLXXIIRSVGGAVAATTVGLVIVPPLVVQLASETGSWMPSVLANVLAGVGTDVSGT-------AAIAALGMWALIPAMIGLVAVQRRDVV 297
+AA+AFAGA G VLGAG+ ++R+ GGAV T + L++ PPL+VQL S+ SW+P+ LA +AGV D + AA L +WAL+PA+IGL++V+RRDVV
Sbjct: 145 LAASAFAGAAGGVLGAGIGAVVRNAGGAVTGTVLVLIVAPPLIVQLISDASSWVPAPLAIAMAGVDPDAANVPTQANAVAATVVLAVWALVPALIGLLSVERRDVV 250 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124260.4942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124260.4942.1 >prot_M-pyrifera_M_contig124260.4942.1 ID=prot_M-pyrifera_M_contig124260.4942.1|Name=mRNA_M-pyrifera_M_contig124260.4942.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp VAAAAFAGATGAVLGAGLGAIIRSVGGAVAATTVGLVIVPPLVVQLASETback to top mRNA from alignment at M-pyrifera_M_contig124260:2..301+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124260.4942.1 ID=mRNA_M-pyrifera_M_contig124260.4942.1|Name=mRNA_M-pyrifera_M_contig124260.4942.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig124260:2..301+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124260:2..301+ >mRNA_M-pyrifera_M_contig124260.4942.1 ID=mRNA_M-pyrifera_M_contig124260.4942.1|Name=mRNA_M-pyrifera_M_contig124260.4942.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig124260:2..301+ (Macrocystis pyrifera P11B4 male)back to top |