mRNA_M-pyrifera_M_contig12423.4937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12423.4937.1
Unique NamemRNA_M-pyrifera_M_contig12423.4937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Match: D7G8Q6_ECTSI (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q6_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 2.840e-86
Identity = 127/182 (69.78%), Postives = 156/182 (85.71%), Query Frame = 3 
Query:  240 MKFGVNVSAPFIGMKRDEGSDYPYAKHYCVRRSDRGTRVLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEA-ALATKAGLVTRLKATVDGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLPSIDEDGTFAPTSNLRDPTTFGSNPQFSVKHTALQITDLFNKVF 782
            MK GVN++APF+GMK++EG +YP+AK +C+RR+DRGTRV+VVQEMAEEP   +++PEGKL HVLEG   LEA   A +AGLVTR+KA+++GHAYRLGDFV+RVG C+KGA++RGLALEVEY PC RVADGL+MIEAF+PSID+DGTF   S+L+D   FG  PQFSVKH ALQITDLFN+VF
Sbjct:    1 MKHGVNLAAPFVGMKKEEGIEYPFAKQFCIRRNDRGTRVMVVQEMAEEPSY-AAVPEGKLTHVLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKCKKGAVFRGLALEVEYRPCNRVADGLSMIEAFIPSIDQDGTFTAVSDLQDLAMFGRGPQFSVKHNALQITDLFNEVF 181
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BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Match: A0A835Z8G4_9STRA (Mediator of RNA polymerase II transcription subunit 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G4_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.280e-35
Identity = 74/147 (50.34%), Postives = 92/147 (62.59%), Query Frame = 3 
Query:  240 MKFGVNVSAPFIGM-KRDEGSDYPYAKHYCVRRSDRGTRVLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEAALATKAGLVTRLKATVDGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLPSIDEDGTF 677
            M+FGVN +  FIG   R + + YP+ +   VRRSD   RV +VQEM +            L  VL G   LEA +A K    TRLKA ++G A+ LGDF +RVG+CRKG+ YRGLA+EVEY PC  V DG AMIEA LP++D  GTF
Sbjct:    1 MRFGVNTAVAFIGEGARQQDATYPFDRINVVRRSDEPGRVCLVQEMGKRA--------ATLEQVLVGDDALEADMAKKVPYPTRLKAVIEGSAFSLGDFTVRVGTCRKGSTYRGLAMEVEYHPCSSVRDGEAMIEALLPTLDPAGTF 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12423.4937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8Q6_ECTSI2.840e-8669.78Mediator of RNA polymerase II transcription subuni... [more]
A0A835Z8G4_9STRA8.280e-3550.34Mediator of RNA polymerase II transcription subuni... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12423contigM-pyrifera_M_contig12423:2333..6231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score64.7
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog36080.S2JML4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TATA-binding related factor (TRF) of subunit 20 of Mediator complex
EggNOG OGs1GUF4@112252,39IJY@33154,3P95H@4751,COG0076@1,KOG1383@2759
COG Functional cat.E
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons7
Model size963
Cds size735
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.8412788-UTR-M-pyrifera_M_contig12423:2332..23851622815759.8412788-UTR-M-pyrifera_M_contig12423:2332..2385Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12423 2333..2385 +
1692277556.3012748-UTR-M-pyrifera_M_contig12423:2332..23851692277556.3012748-UTR-M-pyrifera_M_contig12423:2332..2385Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12423 2333..2385 +
1622815759.9268968-UTR-M-pyrifera_M_contig12423:6056..62311622815759.9268968-UTR-M-pyrifera_M_contig12423:6056..6231Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12423 6057..6231 +
1692277556.393379-UTR-M-pyrifera_M_contig12423:6056..62311692277556.393379-UTR-M-pyrifera_M_contig12423:6056..6231Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12423 6057..6231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.8525221-CDS-M-pyrifera_M_contig12423:2385..24111622815759.8525221-CDS-M-pyrifera_M_contig12423:2385..2411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 2386..2411 +
1692277556.3116965-CDS-M-pyrifera_M_contig12423:2385..24111692277556.3116965-CDS-M-pyrifera_M_contig12423:2385..2411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 2386..2411 +
1622815759.8621166-CDS-M-pyrifera_M_contig12423:2550..26621622815759.8621166-CDS-M-pyrifera_M_contig12423:2550..2662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 2551..2662 +
1692277556.3211932-CDS-M-pyrifera_M_contig12423:2550..26621692277556.3211932-CDS-M-pyrifera_M_contig12423:2550..2662Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 2551..2662 +
1622815759.8721156-CDS-M-pyrifera_M_contig12423:3007..31361622815759.8721156-CDS-M-pyrifera_M_contig12423:3007..3136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 3008..3136 +
1692277556.334325-CDS-M-pyrifera_M_contig12423:3007..31361692277556.334325-CDS-M-pyrifera_M_contig12423:3007..3136Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 3008..3136 +
1622815759.882378-CDS-M-pyrifera_M_contig12423:4429..45021622815759.882378-CDS-M-pyrifera_M_contig12423:4429..4502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 4430..4502 +
1692277556.353497-CDS-M-pyrifera_M_contig12423:4429..45021692277556.353497-CDS-M-pyrifera_M_contig12423:4429..4502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 4430..4502 +
1622815759.8925414-CDS-M-pyrifera_M_contig12423:5012..51251622815759.8925414-CDS-M-pyrifera_M_contig12423:5012..5125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5013..5125 +
1692277556.3631275-CDS-M-pyrifera_M_contig12423:5012..51251692277556.3631275-CDS-M-pyrifera_M_contig12423:5012..5125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5013..5125 +
1622815759.9021876-CDS-M-pyrifera_M_contig12423:5460..55441622815759.9021876-CDS-M-pyrifera_M_contig12423:5460..5544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5461..5544 +
1692277556.3722441-CDS-M-pyrifera_M_contig12423:5460..55441692277556.3722441-CDS-M-pyrifera_M_contig12423:5460..5544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5461..5544 +
1622815759.9134886-CDS-M-pyrifera_M_contig12423:5858..60561622815759.9134886-CDS-M-pyrifera_M_contig12423:5858..6056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5859..6056 +
1692277556.3819427-CDS-M-pyrifera_M_contig12423:5858..60561692277556.3819427-CDS-M-pyrifera_M_contig12423:5858..6056Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12423 5859..6056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12423.4937.1prot_M-pyrifera_M_contig12423.4937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12423 2386..6056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12423.4937.1

>prot_M-pyrifera_M_contig12423.4937.1 ID=prot_M-pyrifera_M_contig12423.4937.1|Name=mRNA_M-pyrifera_M_contig12423.4937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=245bp
MAHRAPVCCVFGKPVAQEGSLEAIRSLEQHIVHVLGAESLDRWTIEVTYK
LKQKKKKAMGSEMKFGVNVSAPFIGMKRDEGSDYPYAKHYCVRRSDRGTR
VLVVQEMAEEPQGGSSLPEGKLVHVLEGTGHLEAALATKAGLVTRLKATV
DGHAYRLGDFVLRVGSCRKGAIYRGLALEVEYTPCCRVADGLAMIEAFLP
SIDEDGTFAPTSNLRDPTTFGSNPQFSVKHTALQITDLFNKVFV*
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mRNA from alignment at M-pyrifera_M_contig12423:2333..6231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12423.4937.1 ID=mRNA_M-pyrifera_M_contig12423.4937.1|Name=mRNA_M-pyrifera_M_contig12423.4937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3899bp|location=Sequence derived from alignment at M-pyrifera_M_contig12423:2333..6231+ (Macrocystis pyrifera P11B4 male)
TCGACGACTCGACGTTGCTACTCTCATCCACGGCGAGTCCAACTATCTTC
AAGATGGCCCACCGGGCACCCGTGTGCTGGTGAGCTACATTCTGATAAGA
GATGGTGGCGAAAAAATGCTCTGCAGATGGCATATACTCATACGCCACTT
CTTCCTATACAGCCTGGAACATCGGTGCGCCCTTTCCCTCCGCTCGTCCG
CTGCCATGTTGTTGACAGCGTTTTCGGAAAGCCTGTAGCGCAAGAAGGAA
GTCTCGAGGCCATCAGAAGTCTTGAGCAACACATTGTGCACGTGCTTGGT
GCGGAATCTTTGGATCGCTGGACAATCGAGGTAAGACTGAGTACCGAGTA
CAGCCGTACCAATAATGCTGTACTTGTTCTTGCTACGAGTAGGCGGGTTG
TCTATTCTACACCTTACGACAGTCCCGCGGAGCTTCGTGTTGTATAGCAC
ATCGTATTCGTATGTATGTACTGCCGAGTGCTGCTGTACGCTGTATCCTC
TACATACACGAACAAATGTGTTTTGCCTCGTTCTATCGTCCATGTAGGAG
GACGGACGGGGGTATTGATGCACAGCGGAATTAATCAGTGGTCAACACGG
GCACCACGCTCTCGCACAGCAGTAGTACGTATACCTTCACAACTGACTTA
CCGGTATGTCTTGGCGTAAACACAGGTGACCTATAAGCTGAAACAGAAGA
AGAAGAAGGCAATGGGAAGCGAAATGAAATTCGGCGTAAACGTGTCGGCT
CCTTTCATCGGCATGAAACGAGACGAGGGCAGTGACTACCCCTACGCGAA
GCACGTGAGTGACGCACAGGACAACAGGGCAATGGCAGAGAAACAGCAGT
CCCATGAGTACTGCCGCGTTTTGTTTTAGCTCTTGGTGACAATACTCCCG
TACCTGTTATACTCCTTCGTGTCTCAAAATGCGGGGTCTCAAAGCAGGGC
TCCCCACCCCACCCCGCTACCGTACTGGCCTTGCTTTCTGTCACGCTAAG
GGTTCAACGCTTCTTTAGTCCACTCATGTCGAAATGCCCTTCCAGTATTT
GCAGATATACCGGGTACGTCATGGTAAAACAGCTGTAAATAGTGTACGCG
CAGGCCCGATAGTGCCCACATCAACGTCCAAAATGTCGTGTATATGTAGC
CATCGAAACCTATGGATACCGCGTGCAAGTTTACGAGGCTCCAACTTGCA
CCACCATTTGCCACCTAATCGTTAGACACGTCGAATTTCTAAGCCTAACA
ACAGCAGGGCTTGCCCTAGACCCACATCGTTTTCCATGTCGCGAAATATG
CGTAGCCCTTCGTGCAAAAGGCATGGCGTGATGCAGTAGAAGGGGCGGGT
GCTGTAATGGAGAAGTCGACGTCGTCTTCCGGCTCAGGCCAAGCAGGTGC
GCGTGACGGACCCGGTGTAAAAGTTGTTGACCGAGAGCTTTCTGGATGTA
GGGAGCATCGGGCTGGAAGCCATCATAAGAGCGCTTATCACCGATCAGCC
TGGCGTTGTTCGTCACTGTTCCTGACCTTGAACCCGGGCAGAGGAGGGTG
CCCTGCGACGCGAGGGACTAAATTTCGCCTTGGTCTTGACCTCCACGTTT
CATGCAGCTCAGACATGCGGTTTACCTCTCACCGCTGCCAACATCGCTGC
TGTACTGCGGCGGCTTCATGTTACCCCAAGCAGCGTGCTGTACTTTGCTG
GGCGTTGGACTGTTGGCGGCCCGTGTCCTGAGCTGTGTGGCTTGTGATTT
CATCAATCGAAATGTTTAGATCGATTGCTGAGTTATCGTACCGTAAACTT
TCTACAAAATTGATAACATCGTGTTAGGCAAAAAATGTGCCCAACAAACA
GTCGTTTATATGAAAAATCACGGCCGTCACTACACGTTGCGTGTATAACT
TTGACCGATAGGGTTTTCACCTAAACGTCGATATGCGGGAGGTGTGATGG
ATGTGCGTACAAATGGGGCATTTGTGTACTAAAGACAGAACCTGTCATGT
TCATGATGCACGTGAGTATCCCTTCTGGCCTAGCTCTAGAGTTTTAATCG
CCCTTCTCCTTTCCCGGACATTCTTGCCTCGCTGCCGGCCAATACAGTAT
TGCGTTCGAAGAAGTGATCGTGGAACTCGGGTGTTGGTGGTACAAGAAAT
GGCAGAGGAGCCGCAAGGAGGCGAGTTGACCTTATCAGCGAAGGGGGTAG
ACACTGCAAATCTCGGAGACCGCTACGCTCATGTCGTCCGGCTTCAAATT
CCAATAGCTATCCGTGTCGGCACCGCCTCGTGGGATCGCTAATACCTGGT
ACTCCTTTTTATCAGATTCGAAACGCCAGAACTTGAGTGTTGAGTGGGCA
CGGAGTACCTCGAGCAAGACAGGACGAGGTTGTAAATTGGAAAAGGGATA
CCGAGAGGTTTGGAGGGGAGTTCTGACCACAAAAAGTACATGCATTCTTG
GTTGAAATGAAAAGAGCCTTGAAAAAATGTTCCTCAAGCAAAAATGAAAG
ACTCAGGTACCTGGTGTGTGATTTCTGATGGGTACAGCGTGGACACTGCT
TTGCCTGTGTATCGCTCTTTAAATCAACCAAAAGCTTATTATCTACTTCA
ACGGCTGTCTGCTCCCGTAGCTAAAACTGTGTTTATGTTTCATATGTATA
GCTGCCGCTGACAGTTGAGTGTAATTTCAGGTTCTTCGCTGCCGGAGGGA
AAGCTGGTGCACGTCTTGGAGGGAACAGGCCATCTGGAGGCCGCCTTAGC
TACGAAAGCCGGATTGGTAACAAGGTTAAAGGCAACTGTTGATGTGAGAT
ATAATCGTTTACGGGCACTGTACCAGGTCTACCGGCAAGCACCCGCCGGT
CTTGACTATTGCCACGCGTATACATGAAGTTTAACTGACGGGCAATCGAA
TCCCATGAGAGTGCGAGTAATACTATTGGTAGACCGGACGAATTGAACAC
GGTGAAGCTGCCTACTTTTATTTTTGCAACGCTATGTGCCATATTTCCCA
CCAAACTCACTTCATGATCTTAATAATCGCTTGACACTACTCGTACACTT
ACGAAGATCAGTTGTGTGCGCGTTTGCAGTCGCGGTGACTTCCGCTGTCC
CCCTTTGGCGGTGTCTTCGCTTTTCCAGGGCCACGCCTATAGATTAGGCG
ACTTCGTCCTGAGGGTCGGGTCGTGCCGGAAAGGTGCCATCTACAGAGGG
TTGGCCCTTGAGGTGAGAACATGATGGCCCTGCTCGATGAACCTAGACTA
TTTTGCCCAAGATATTGCTGAACGTAGAAATTGGTCGATGAGCACAATGA
GGAAGAAGCGGGCCAAGAAGTGGACCTCATTGCGATGCAACGCGAAAAAG
GCTAAACATATGTGTAAAATGGTGGAGATCGCTGAGACCACAGGGCTTGG
AATATGGTACATACATGCCAGGTATTGATAGACGTTTTATTACATACCAG
GTACTATTAATAGGTACCTGGGATCAGATTCCAATGAGTTTATCCTGCGC
GTTTTTGAAAATGCCCCATATGACAGGTGGAATACACGCCTTGTTGCAGA
GTGGCGGATGGACTGGCAATGATCGAGGCATTTCTTCCGTCCATTGACGA
GGATGGGACGTTCGCGCCTACTAGCAACCTTCGCGACCCAACGACTTTTG
GCTCCAACCCGCAGTTTTCAGTTAAACACACGGCGTTGCAGATAACCGAT
CTGTTCAATAAAGTATTTGTTTAACAAATCGAGCACGTGCAAACGCAGTA
TAAATTACCAGGCGAAGTTGGATTCGGTGGGTACTTGAAAGTGCTACGCA
ATTATCAATGCTCAGCTGGGTTTTTTGGGTTTTTGCGGTAAATATATGTT
GACGGTTGAACATTCTTCAAGGAGAACTTCCATGAAATGCTGCGGTGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12423:2333..6231+

>mRNA_M-pyrifera_M_contig12423.4937.1 ID=mRNA_M-pyrifera_M_contig12423.4937.1|Name=mRNA_M-pyrifera_M_contig12423.4937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1470bp|location=Sequence derived from alignment at M-pyrifera_M_contig12423:2333..6231+ (Macrocystis pyrifera P11B4 male)
ATGGCCCACCGGGCACCCGTGTGCTGATGGCCCACCGGGCACCCGTGTGC
TGCGTTTTCGGAAAGCCTGTAGCGCAAGAAGGAAGTCTCGAGGCCATCAG
AAGTCTTGAGCAACACATTGTGCACGTGCTTGGTGCGGAATCTTTGGATC
GCTGGACAATCGAGCGTTTTCGGAAAGCCTGTAGCGCAAGAAGGAAGTCT
CGAGGCCATCAGAAGTCTTGAGCAACACATTGTGCACGTGCTTGGTGCGG
AATCTTTGGATCGCTGGACAATCGAGGTGACCTATAAGCTGAAACAGAAG
AAGAAGAAGGCAATGGGAAGCGAAATGAAATTCGGCGTAAACGTGTCGGC
TCCTTTCATCGGCATGAAACGAGACGAGGGCAGTGACTACCCCTACGCGA
AGCACGTGACCTATAAGCTGAAACAGAAGAAGAAGAAGGCAATGGGAAGC
GAAATGAAATTCGGCGTAAACGTGTCGGCTCCTTTCATCGGCATGAAACG
AGACGAGGGCAGTGACTACCCCTACGCGAAGCACTATTGCGTTCGAAGAA
GTGATCGTGGAACTCGGGTGTTGGTGGTACAAGAAATGGCAGAGGAGCCG
CAAGGAGTATTGCGTTCGAAGAAGTGATCGTGGAACTCGGGTGTTGGTGG
TACAAGAAATGGCAGAGGAGCCGCAAGGAGGTTCTTCGCTGCCGGAGGGA
AAGCTGGTGCACGTCTTGGAGGGAACAGGCCATCTGGAGGCCGCCTTAGC
TACGAAAGCCGGATTGGTAACAAGGTTAAAGGCAACTGTTGATGTTCTTC
GCTGCCGGAGGGAAAGCTGGTGCACGTCTTGGAGGGAACAGGCCATCTGG
AGGCCGCCTTAGCTACGAAAGCCGGATTGGTAACAAGGTTAAAGGCAACT
GTTGATGGCCACGCCTATAGATTAGGCGACTTCGTCCTGAGGGTCGGGTC
GTGCCGGAAAGGTGCCATCTACAGAGGGTTGGCCCTTGAGGGCCACGCCT
ATAGATTAGGCGACTTCGTCCTGAGGGTCGGGTCGTGCCGGAAAGGTGCC
ATCTACAGAGGGTTGGCCCTTGAGGTGGAATACACGCCTTGTTGCAGAGT
GGCGGATGGACTGGCAATGATCGAGGCATTTCTTCCGTCCATTGACGAGG
ATGGGACGTTCGCGCCTACTAGCAACCTTCGCGACCCAACGACTTTTGGC
TCCAACCCGCAGTTTTCAGTTAAACACACGGCGTTGCAGATAACCGATCT
GTTCAATAAAGTATTTGTTTAAGTGGAATACACGCCTTGTTGCAGAGTGG
CGGATGGACTGGCAATGATCGAGGCATTTCTTCCGTCCATTGACGAGGAT
GGGACGTTCGCGCCTACTAGCAACCTTCGCGACCCAACGACTTTTGGCTC
CAACCCGCAGTTTTCAGTTAAACACACGGCGTTGCAGATAACCGATCTGT
TCAATAAAGTATTTGTTTAA
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