mRNA_M-pyrifera_M_contig124217.4934.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124217.4934.1
Unique NamemRNA_M-pyrifera_M_contig124217.4934.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A0D2UIZ9_CAPO3 (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UIZ9_CAPO3)

HSP 1 Score: 112 bits (281), Expect = 4.370e-29
Identity = 50/77 (64.94%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDE-TIH 228
            VDYILF+Q+D+ VNANPNEV+ Y+Y+S++ELK  L++A+ANG+P+TPWF LIV  FLY WWDQL  V+SL D  TIH
Sbjct:  160 VDYILFLQRDVNVNANPNEVKSYRYLSQDELKRLLSDAEANGMPVTPWFKLIVETFLYKWWDQLSTVASLSDPATIH 236          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: C3Z399_BRAFL (Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z399_BRAFL)

HSP 1 Score: 109 bits (272), Expect = 7.730e-28
Identity = 48/77 (62.34%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDE-TIH 228
            +DYILFIQK++ VN NPNEV+ ++Y++KE+L+ FL  AK  G PITPWF LIV++FLY WWD+L +V SLKD+ TIH
Sbjct:  149 IDYILFIQKEVDVNPNPNEVKTFQYINKEQLRHFLETAKEEGRPITPWFQLIVDRFLYSWWDKLHDVDSLKDQDTIH 225          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A7S4MQK3_9EUKA (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MQK3_9EUKA)

HSP 1 Score: 108 bits (270), Expect = 1.900e-27
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDETIHVM 234
            VDYIL I+K++    NPNEV+D KYVS+E LK+F+A A  NGIPITPWF LIV  FLY WWDQL+++ SL+  T+H M
Sbjct:  159 VDYILIIRKNVSFTPNPNEVKDTKYVSQEGLKQFIAEADENGIPITPWFRLIVENFLYKWWDQLDDLESLQSNTVHKM 236          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A6P5AYF1_BRABE (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AYF1_BRABE)

HSP 1 Score: 107 bits (266), Expect = 1.490e-26
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDE-TIH 228
            +DYILFIQK++ V  NPNEV+ ++Y++KE+L+ FL  AK +G PITPWF LIV++FLY WWD+L +V SLKD+ TIH
Sbjct:  190 IDYILFIQKEVDVKPNPNEVKSHQYINKEQLQHFLQTAKEDGRPITPWFQLIVDRFLYSWWDKLNDVDSLKDQGTIH 266          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A8J9VGM0_BRALA (PKDREJ protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VGM0_BRALA)

HSP 1 Score: 105 bits (261), Expect = 1.930e-24
Identity = 44/71 (61.97%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLK 213
            +DYILFIQK++ VN NPNEV+ Y+Y++KE+L+ FL  AK  G PITPWF LIV++FLY WWD+L++V+SL+
Sbjct:  346 IDYILFIQKEVDVNPNPNEVKTYQYINKEQLRRFLETAKEEGRPITPWFQLIVDRFLYSWWDKLDDVNSLE 416          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A1Y1X7G8_9FUNG (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1X7G8_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 4.180e-24
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDETIH 228
            +DYI  I+ D+ +N NPNEV  YKYV+K+ELKE  A  K  GI ITPWF LIV  FLY WWD + ++ S KD TIH
Sbjct:  149 LDYIFIIKADVDLNINPNEVMSYKYVTKDELKEIFATQKETGIKITPWFKLIVENFLYKWWDNINDLESQKDLTIH 224          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: A0A822HZ32_9NEOB (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822HZ32_9NEOB)

HSP 1 Score: 98.2 bits (243), Expect = 5.970e-24
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKD-ETIHVM 234
            +DYILFIQK++KV+ +PNE+Q + YVSKEEL + L  AK   + ITPWF LI + FLY WWD LEN+ S +D + IH M
Sbjct:  105 IDYILFIQKEVKVDPDPNEIQSHCYVSKEELTQLLERAKRGEVKITPWFQLIADTFLYKWWDNLENLKSFEDHDKIHRM 183          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: B3RQV5_TRIAD (Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Trichoplax adhaerens TaxID=10228 RepID=B3RQV5_TRIAD)

HSP 1 Score: 99.4 bits (246), Expect = 6.560e-24
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDE-TIHVM 234
            +DYILFIQ+D++V+  PNEV  Y+YVSKEELKE L  A AN I ITPWF LI   FL+ WWD L+++ +  DE TIH M
Sbjct:  150 IDYILFIQRDVEVDMQPNEVMSYRYVSKEELKEILDTADANNIVITPWFRLIAKSFLFKWWDILDSLQTQVDEHTIHRM 228          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: UPI000359D827 (isopentenyl-diphosphate Delta-isomerase 1 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI000359D827)

HSP 1 Score: 100 bits (250), Expect = 1.030e-23
Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKD-ETIHVM 234
            +DYILFI++D+ V ANPNEV+ YKYVSK+ELK+ + +A + G+ +TPWF LIV  FL+ WWD L+N++S  D  TIH M
Sbjct:  255 IDYILFIKRDVDVVANPNEVKSYKYVSKQELKDIVESADSKGMLLTPWFKLIVQNFLFKWWDSLDNITSQADVNTIHKM 333          
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Match: UPI000C6E1826 (isopentenyl-diphosphate Delta-isomerase 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6E1826)

HSP 1 Score: 99.0 bits (245), Expect = 1.760e-23
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFALIVNKFLYGWWDQLENVSSLKDE-TIHV 231
            +DYIL +QKD+K+  NPNEV D +YVS+ ++ +FL+  +  G  ITPWF +IVN FLYGWWD L  + +LKD+ +IHV
Sbjct:  183 IDYILILQKDVKIERNPNEVADVRYVSRGDMPDFLSYLRTKGCRITPWFDMIVNNFLYGWWDNLHQLETLKDQGSIHV 260          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124217.4934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2UIZ9_CAPO34.370e-2964.94Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ca... [more]
C3Z399_BRAFL7.730e-2862.34Isopentenyl-diphosphate Delta-isomerase n=2 Tax=Br... [more]
A0A7S4MQK3_9EUKA1.900e-2761.54Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Va... [more]
A0A6P5AYF1_BRABE1.490e-2661.04Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Br... [more]
A0A8J9VGM0_BRALA1.930e-2461.97PKDREJ protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A1Y1X7G8_9FUNG4.180e-2457.89Isopentenyl-diphosphate Delta-isomerase n=1 Tax=An... [more]
A0A822HZ32_9NEOB5.970e-2456.96Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Ra... [more]
B3RQV5_TRIAD6.560e-2459.49Isopentenyl-diphosphate Delta-isomerase n=1 Tax=Tr... [more]
UPI000359D8271.030e-2356.96isopentenyl-diphosphate Delta-isomerase 1 isoform ... [more]
UPI000C6E18261.760e-2353.85isopentenyl-diphosphate Delta-isomerase 1-like n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124217contigM-pyrifera_M_contig124217:99..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score113.2
Seed ortholog evalue5.9e-23
Seed eggNOG ortholog192875.XP_004346256.1
Preferred nameIDI1
KEGG rclassRC00455
KEGG koko:K01823
KEGG ReactionR01123
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00095,M00096,M00364,M00365,M00366,M00367
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004452,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005829,GO:0006066,GO:0006629,GO:0006644,GO:0006694,GO:0006695,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008202,GO:0008203,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009889,GO:0009987,GO:0010033,GO:0014070,GO:0016114,GO:0016125,GO:0016126,GO:0016853,GO:0016860,GO:0016863,GO:0019216,GO:0019218,GO:0019222,GO:0019637,GO:0030145,GO:0035634,GO:0042221,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045337,GO:0045338,GO:0045540,GO:0046165,GO:0046490,GO:0046872,GO:0046890,GO:0046914,GO:0050789,GO:0050810,GO:0050896,GO:0062012,GO:0065007,GO:0071704,GO:0080090,GO:0090181,GO:0090407,GO:0106118,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1902652,GO:1902653,GO:1902930
EggNOG free text desc.isopentenyl-diphosphate Delta-isomerase
EggNOG OGs38DS6@33154,COG1443@1,KOG0142@2759
EC5.3.3.2
COG Functional cat.Q
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.715021-CDS-M-pyrifera_M_contig124217:98..3531622815759.715021-CDS-M-pyrifera_M_contig124217:98..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124217 99..353 +
1692277556.249529-CDS-M-pyrifera_M_contig124217:98..3531692277556.249529-CDS-M-pyrifera_M_contig124217:98..353Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124217 99..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124217.4934.1prot_M-pyrifera_M_contig124217.4934.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124217 99..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124217.4934.1

>prot_M-pyrifera_M_contig124217.4934.1 ID=prot_M-pyrifera_M_contig124217.4934.1|Name=mRNA_M-pyrifera_M_contig124217.4934.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
VDYILFIQKDIKVNANPNEVQDYKYVSKEELKEFLANAKANGIPITPWFA
LIVNKFLYGWWDQLENVSSLKDETIHVMTGANQS*
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mRNA from alignment at M-pyrifera_M_contig124217:99..353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124217.4934.1 ID=mRNA_M-pyrifera_M_contig124217.4934.1|Name=mRNA_M-pyrifera_M_contig124217.4934.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig124217:99..353+ (Macrocystis pyrifera P11B4 male)
GTTGACTACATTCTCTTCATCCAGAAGGACATCAAGGTTAATGCCAACCC CAATGAAGTCCAGGACTACAAGTACGTCTCAAAGGAGGAGCTGAAGGAGT TCCTCGCCAACGCCAAGGCGAACGGCATCCCCATCACGCCTTGGTTTGCG CTCATCGTGAACAAGTTCCTCTACGGATGGTGGGACCAGCTTGAGAACGT GTCTAGTCTGAAGGACGAGACCATCCACGTGATGACTGGGGCCAACCAGT CCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124217:99..353+

>mRNA_M-pyrifera_M_contig124217.4934.1 ID=mRNA_M-pyrifera_M_contig124217.4934.1|Name=mRNA_M-pyrifera_M_contig124217.4934.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig124217:99..353+ (Macrocystis pyrifera P11B4 male)
GTTGACTACATTCTCTTCATCCAGAAGGACATCAAGGTTAATGCCAACCC
CAATGAAGTCCAGGACTACAAGTACGTCTCAAAGGAGGAGCTGAAGGAGT
TCCTCGCCAACGCCAAGGCGAACGGCATCCCCATCACGCCTTGGTTTGCG
CTCATCGTGAACAAGTTCCTCTACGGATGGTGGGACCAGCTTGAGAACGT
GTCTAGTCTGAAGGACGAGACCATCCACGTGATGACTGGGGCCAACCAGT
CCTAGGTTGACTACATTCTCTTCATCCAGAAGGACATCAAGGTTAATGCC
AACCCCAATGAAGTCCAGGACTACAAGTACGTCTCAAAGGAGGAGCTGAA
GGAGTTCCTCGCCAACGCCAAGGCGAACGGCATCCCCATCACGCCTTGGT
TTGCGCTCATCGTGAACAAGTTCCTCTACGGATGGTGGGACCAGCTTGAG
AACGTGTCTAGTCTGAAGGACGAGACCATCCACGTGATGACTGGGGCCAA
CCAGTCCTAG
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