mRNA_M-pyrifera_M_contig124203.4929.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124203.4929.1
Unique NamemRNA_M-pyrifera_M_contig124203.4929.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A8J5XCX4_DIALT (Xpo1 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCX4_DIALT)

HSP 1 Score: 63.5 bits (153), Expect = 8.130e-10
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   13 QRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKMAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            + F +  L + V   W  L E ++ E+K + L++   L +  AE  F+  A V L  E+A+REWPQRWP+L+D L    ER 
Sbjct:   63 RHFAMHTLVELVRARWPSLAELRRAELKALALQLVGLLGE-AAEPAFIAGAAVRLVCELAVREWPQRWPELVDELLRAAERS 143          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: F2U0W2_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U0W2_SALR5)

HSP 1 Score: 62.4 bits (150), Expect = 2.030e-9
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 1
Query:   10 VQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLK--MAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHL 237
            ++ FG+QLL   V   W    + QK+EMK  +L   +      +  E  F+   +  L  EVAIREWPQRWPD LD L
Sbjct:   66 IRHFGLQLLEHCVQHRWDSYAQEQKEEMKQALLHNLIMRGTFPLLQERPFIMEKIASLVSEVAIREWPQRWPDFLDIL 143          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A8C4QPI4_EPTBU (Exportin 5 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QPI4_EPTBU)

HSP 1 Score: 58.9 bits (141), Expect = 3.390e-8
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   10 VQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKM-AESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            V+ FG+QLL   +   W  + + +K ++K  + K+  +    I  E   ++  V  L +E+A REWPQ+WP++LD L  L + G
Sbjct:   60 VRHFGLQLLEHCIKFRWINMNQEEKLQLKEDIWKIITDGTLPIMEEEAHVKDVVSRLVVEMAKREWPQQWPEMLDELKALCKIG 143          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A6S7G3P5_PARCT (Exportin-5 isoform X2 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3P5_PARCT)

HSP 1 Score: 58.5 bits (140), Expect = 4.690e-8
Identity = 23/84 (27.38%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   10 VQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKMAESLQD-ITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            V+ +G++L+  A+  +W  +   +K  +K++ L   +   + +  E  +L   +  L +E+  REWPQ WPD++D+L+ + ++G
Sbjct:   70 VKHYGLKLILHAIKFNWNEMLLEEKDNLKILSLHYIQGCTNSLLDEPTYLNDVIAKLTVEIMKREWPQNWPDIIDNLSEISQKG 153          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A7S4IKW1_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IKW1_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 4.160e-7
Identity = 26/82 (31.71%), Postives = 48/82 (58.54%), Query Frame = 1
Query:   13 QRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKMAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            + FG+ LL++A+  +W R +  QK+E K   L++   L+    E  FL+  ++ + +E+A REWPQ+W +L+  +  +   G
Sbjct:   58 KHFGLHLLSQAIKKYWNRFSAAQKEEFKNSSLQLVTCLK--ANEPTFLKEKLITVWVELAKREWPQQWSNLIPQIISISSSG 137          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A0D2WNU3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WNU3_CAPO3)

HSP 1 Score: 54.7 bits (130), Expect = 1.060e-6
Identity = 27/84 (32.14%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   10 VQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKM-AESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            V++FG+  L + V + W       K E K  VL++ A  ++ I  E  +++  +  + +E+A R+WPQRWP   D L  L + G
Sbjct:   77 VRQFGLHTLEECVRSRWNSYDTSLKDEFKTGVLELLATGMRSILNEPLYIKEKLAQVIVELAKRDWPQRWPTFFDELPELSKIG 160          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: W2QKI2_PHYPN (Importin N-terminal domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2QKI2_PHYPN)

HSP 1 Score: 53.1 bits (126), Expect = 3.720e-6
Identity = 29/84 (34.52%), Postives = 47/84 (55.95%), Query Frame = 1
Query:   13 QRFGVQLLAKAVGTHWARLTEPQKQEMKV--VVLKMAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            Q F + +L   V T W+ L   ++Q+M+V  V L + E+  D   +  F++   V L  ++A R++PQRWPDLL  L  + + G
Sbjct:   65 QHFALHVLEHYVLTRWSSLPVEEQQKMRVELVALLLRENQPDDADDPVFVKEKKVSLLAQIAKRQFPQRWPDLLPELLQVWQAG 148          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A7M7MCS5_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7MCS5_VARDE)

HSP 1 Score: 52.4 bits (124), Expect = 6.940e-6
Identity = 30/87 (34.48%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   16 RFGVQLLAKAVGTHWARL-----TEPQKQEMKVVVLKMAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHL-TVLVERG 258
            R G  LL +    HW RL     +E ++ ++K  + +  E   DI  E   ++  +  LA+E+A REWPQ+WP+L+  L T+   RG
Sbjct:   68 RHGALLLME----HWVRLRWNEFSETERTQLKTELFQWIEGTGDIMQEIPQVKEGICRLAVEIAKREWPQKWPELMPTLFTITKLRG 150          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A1L1C9_XENTR (exportin 5 n=8 Tax=Xenopus tropicalis TaxID=8364 RepID=A1L1C9_XENTR)

HSP 1 Score: 51.6 bits (122), Expect = 1.300e-5
Identity = 25/84 (29.76%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   10 VQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKM-AESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            V+ FG+ +L   +   W  ++  +K  +K  V+ + +  +  I  E   ++  +  + +E+A REWPQ WPDLL+ L  L   G
Sbjct:   62 VRHFGLHVLEHVIKFRWNDMSREEKVCLKDSVMDLISHGMHPILEEESHIKDMMARIVVEMAKREWPQHWPDLLNELDSLTRVG 145          
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Match: A0A484ED01_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED01_BRELC)

HSP 1 Score: 51.6 bits (122), Expect = 1.300e-5
Identity = 30/84 (35.71%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   13 QRFGVQLLAKAVGTHWARLTEPQKQEMK--VVVLKMAESLQDITAEARFLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG 258
            Q F + +L   V T+W  L   ++Q M+  +V L + E   D   +  FLR   V L  +VA R++PQRWP+L+  L  L + G
Sbjct:   65 QHFALHVLEHHVLTNWRTLPVEEQQNMRTELVDLLLREPQSDDADDPVFLREKKVSLVAQVAKRQFPQRWPELMPELLQLWQTG 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124203.4929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A8J5XCX4_DIALT8.130e-1037.80Xpo1 domain-containing protein n=1 Tax=Diacronema ... [more]
F2U0W2_SALR52.030e-941.03Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A8C4QPI4_EPTBU3.390e-833.33Exportin 5 n=1 Tax=Eptatretus burgeri TaxID=7764 R... [more]
A0A6S7G3P5_PARCT4.690e-827.38Exportin-5 isoform X2 n=1 Tax=Paramuricea clavata ... [more]
A0A7S4IKW1_9EUKA4.160e-731.71Hypothetical protein (Fragment) n=2 Tax=Vannella s... [more]
A0A0D2WNU3_CAPO31.060e-632.14Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
W2QKI2_PHYPN3.720e-634.52Importin N-terminal domain-containing protein n=13... [more]
A0A7M7MCS5_VARDE6.940e-634.48Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
A1L1C9_XENTR1.300e-529.76exportin 5 n=8 Tax=Xenopus tropicalis TaxID=8364 R... [more]
A0A484ED01_BRELC1.300e-535.71Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124203contigM-pyrifera_M_contig124203:23..280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue9.2e-08
Seed eggNOG ortholog946362.XP_004997097.1
Preferred nameXPO5
KEGG koko:K14289
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005049,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0008565,GO:0009892,GO:0009987,GO:0010468,GO:0010586,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016070,GO:0016441,GO:0016458,GO:0017016,GO:0017076,GO:0019001,GO:0019222,GO:0019899,GO:0031047,GO:0031074,GO:0031224,GO:0031267,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0034641,GO:0034660,GO:0035068,GO:0035194,GO:0035195,GO:0035281,GO:0035639,GO:0036094,GO:0040029,GO:0042272,GO:0042565,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046822,GO:0046825,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051020,GO:0051031,GO:0051049,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0060147,GO:0060148,GO:0060255,GO:0060341,GO:0060966,GO:0060968,GO:0061608,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0070883,GO:0071166,GO:0071426,GO:0071431,GO:0071528,GO:0071702,GO:0071704,GO:0071705,GO:0090087,GO:0090304,GO:0097064,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1900368,GO:1900370,GO:1901265,GO:1901360,GO:1901363,GO:1903827,GO:1990904
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsCOG5101@1,KOG2020@2759
COG Functional cat.UY
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03016,ko03036
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.529131-CDS-M-pyrifera_M_contig124203:22..2801622815759.529131-CDS-M-pyrifera_M_contig124203:22..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124203 23..280 +
1692277556.1648045-CDS-M-pyrifera_M_contig124203:22..2801692277556.1648045-CDS-M-pyrifera_M_contig124203:22..280Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124203 23..280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124203.4929.1prot_M-pyrifera_M_contig124203.4929.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124203 23..280 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124203.4929.1

>prot_M-pyrifera_M_contig124203.4929.1 ID=prot_M-pyrifera_M_contig124203.4929.1|Name=mRNA_M-pyrifera_M_contig124203.4929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
PTAVQRFGVQLLAKAVGTHWARLTEPQKQEMKVVVLKMAESLQDITAEAR
FLRSAVVDLAIEVAIREWPQRWPDLLDHLTVLVERG
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mRNA from alignment at M-pyrifera_M_contig124203:23..280+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124203.4929.1 ID=mRNA_M-pyrifera_M_contig124203.4929.1|Name=mRNA_M-pyrifera_M_contig124203.4929.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig124203:23..280+ (Macrocystis pyrifera P11B4 male)
CCTACCGCAGTGCAGCGGTTCGGCGTGCAGTTGCTGGCCAAGGCTGTGGG CACGCACTGGGCACGCCTCACGGAGCCGCAGAAGCAGGAGATGAAGGTCG TGGTGCTGAAGATGGCCGAGAGCCTCCAGGATATCACGGCAGAGGCCCGC TTCCTCAGGTCCGCTGTCGTGGACCTCGCAATAGAGGTAGCCATCCGCGA GTGGCCCCAGCGGTGGCCAGACCTTCTTGACCACCTGACAGTGCTTGTAG AGAGAGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124203:23..280+

>mRNA_M-pyrifera_M_contig124203.4929.1 ID=mRNA_M-pyrifera_M_contig124203.4929.1|Name=mRNA_M-pyrifera_M_contig124203.4929.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig124203:23..280+ (Macrocystis pyrifera P11B4 male)
CCTACCGCAGTGCAGCGGTTCGGCGTGCAGTTGCTGGCCAAGGCTGTGGG
CACGCACTGGGCACGCCTCACGGAGCCGCAGAAGCAGGAGATGAAGGTCG
TGGTGCTGAAGATGGCCGAGAGCCTCCAGGATATCACGGCAGAGGCCCGC
TTCCTCAGGTCCGCTGTCGTGGACCTCGCAATAGAGGTAGCCATCCGCGA
GTGGCCCCAGCGGTGGCCAGACCTTCTTGACCACCTGACAGTGCTTGTAG
AGAGAGGCCCTACCGCAGTGCAGCGGTTCGGCGTGCAGTTGCTGGCCAAG
GCTGTGGGCACGCACTGGGCACGCCTCACGGAGCCGCAGAAGCAGGAGAT
GAAGGTCGTGGTGCTGAAGATGGCCGAGAGCCTCCAGGATATCACGGCAG
AGGCCCGCTTCCTCAGGTCCGCTGTCGTGGACCTCGCAATAGAGGTAGCC
ATCCGCGAGTGGCCCCAGCGGTGGCCAGACCTTCTTGACCACCTGACAGT
GCTTGTAGAGAGAGGC
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