mRNA_M-pyrifera_M_contig124200.4927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124200.4927.1
Unique NamemRNA_M-pyrifera_M_contig124200.4927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: UPI00138FCA80 (ankyrin repeat domain-containing protein 39 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FCA80)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-9
Identity = 29/71 (40.85%), Postives = 45/71 (63.38%), Query Frame = 1
Query:   55 DDEDWTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGR-SPLYLSSGWGGEEITSFLLQHNGDVTACNQDG 264
            D   +TAL +AC NGHL++ K+L++ GA  +   K G+ +PL+ ++  G E+I   LL+  GD + CN DG
Sbjct:   56 DKSGYTALHYACSNGHLEVCKMLLDRGACCNKQTKAGQDTPLHRAAYRGYEDIVQLLLEKGGDPSICNADG 126          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A1Y2B9Z5_9FUNG (Ankyrin n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2B9Z5_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-8
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   16 LMLVPHANWRPSRDDEDWTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQH 231
            L+L    N   S  ++  TAL WAC NGHL+IVK+LV  GA +   + +G+SPL L+   G E + ++++++
Sbjct:  182 LVLPADLNSTVSTSEDGGTALHWACLNGHLEIVKVLVKLGANIGAKNLEGKSPLGLAEMMGRERVVNWIVEN 253          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A815R6R2_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815R6R2_ADIRI)

HSP 1 Score: 59.3 bits (142), Expect = 2.710e-8
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 1
Query:   70 TALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQHNGDVTACN 255
            TAL  AC  G+LD++ +L+ AGA ++ +D  G +PL+ ++ W  ++I  FLL+ N D+ A N
Sbjct:  218 TALHVACAKGYLDVIDVLLRAGANINSVDNDGWTPLHAAAHWDKQDIIKFLLERNADIEAKN 279          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: D8LTT1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.300e-7
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1
Query:   49 SRDDEDWTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQHNG 237
            S D +  TAL  +C  GHL++ +LLV AGA V   D  G SPL +++  G +E+T +L+Q  G
Sbjct:  969 SLDKDGRTALLRSCIGGHLEVARLLVEAGADVDFQDSSGTSPLGVAAVLGNKELTRYLVQIGG 1031          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A8B8PXS2_9MYRT (uncharacterized protein LOC115747157 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8PXS2_9MYRT)

HSP 1 Score: 56.2 bits (134), Expect = 3.340e-7
Identity = 22/55 (40.00%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   67 WTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQH 231
            WT LF+A + GH DI+++L+N G  V + D+ G +PL+++   G EE+   LL++
Sbjct:  826 WTPLFYAAYQGHPDIIRMLLNQGTRVDVFDENGEAPLHVAVERGKEEVVDILLEN 880          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A813SNH5_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813SNH5_9BILA)

HSP 1 Score: 55.5 bits (132), Expect = 6.140e-7
Identity = 25/65 (38.46%), Postives = 39/65 (60.00%), Query Frame = 1
Query:   70 TALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQHNGDVTACNQDG 264
            TAL  AC  G+LD++ +L+ AGA ++ MD  G +PL+ ++ W   +   FL+  N D+ A N  G
Sbjct:  215 TALHVACAKGYLDVMDILLKAGANINAMDNDGWTPLHAAAHWDKHDAIKFLIDRNCDLEAKNYAG 279          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A507DZU9_9FUNG (Poly [ADP-ribose] polymerase n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DZU9_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 1.170e-6
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   73 ALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRS-PLYLSSGWGGEEITSFLLQHNGDVTACNQDG 264
            AL +A   GHLD VK LV+AGAAV  M K+ +S PL L+S  G +E+  FLL H  D+   ++ G
Sbjct:  627 ALHYAAHYGHLDAVKALVDAGAAVSAMVKKTKSTPLLLASSRGHKEVMMFLLDHGVDIEEVDRYG 691          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A6U2EV03_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2EV03_HEMAN)

HSP 1 Score: 52.8 bits (125), Expect = 1.980e-6
Identity = 28/93 (30.11%), Postives = 45/93 (48.39%), Query Frame = 1
Query:   25 VPHANWRPSRDDED-----WTALFWACFNGHLDIVKLLVNAG--------AAVHLMDKQGRSPLYLSSGWGGEEITSFLLQHNGDVTACNQDG 264
            +   N   ++DDE      WT L WA  NGH++IV+LL++ G          V + D+ G + L+++  WG   +   L    G +   N+DG
Sbjct:   27 IEDTNMLRTQDDETGLFPGWTPLHWAARNGHIEIVRLLLDEGDRTGSGDLPLVAIADEDGDTALHVAVSWGQSAVVDLLHDRGGSLIGKNKDG 119          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A6I9P8D3_9TELE (histone-lysine N-methyltransferase EHMT1-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9P8D3_9TELE)

HSP 1 Score: 51.2 bits (121), Expect = 3.800e-6
Identity = 29/70 (41.43%), Postives = 36/70 (51.43%), Query Frame = 1
Query:   55 DDEDWTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQHNGDVTACNQDG 264
            D+E  T L  AC N HLD VK L+ AGAAV   D  G + L+L++  G  +I   LL        C  DG
Sbjct:    3 DEEQRTPLMAACENNHLDTVKYLLRAGAAVSHKDIMGFTCLHLAAKLGHHDIIHHLLSKASKYINCQDDG 72          
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Match: A0A0N4VAN2_ENTVE (ANK_REP_REGION domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VAN2_ENTVE)

HSP 1 Score: 52.4 bits (124), Expect = 7.460e-6
Identity = 22/54 (40.74%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   70 TALFWACFNGHLDIVKLLVNAGAAVHLMDKQGRSPLYLSSGWGGEEITSFLLQH 231
            TA+  A   G++D++ LL+ AGA VH  DK+G +PL+ ++ WG  E    L++H
Sbjct:  200 TAIHVAAAKGYVDVLNLLLKAGADVHCRDKEGWTPLHAAAHWGEREAAVILMEH 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124200.4927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00138FCA801.310e-940.85ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
A0A1Y2B9Z5_9FUNG1.440e-838.89Ankyrin n=1 Tax=Rhizoclosmatium globosum TaxID=329... [more]
A0A815R6R2_ADIRI2.710e-840.32Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
D8LTT1_ECTSI3.300e-742.86Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A8B8PXS2_9MYRT3.340e-740.00uncharacterized protein LOC115747157 n=1 Tax=Rhoda... [more]
A0A813SNH5_9BILA6.140e-738.46Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A507DZU9_9FUNG1.170e-647.69Poly [ADP-ribose] polymerase n=1 Tax=Powellomyces ... [more]
A0A6U2EV03_HEMAN1.980e-630.11Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6I9P8D3_9TELE3.800e-641.43histone-lysine N-methyltransferase EHMT1-like n=1 ... [more]
A0A0N4VAN2_ENTVE7.460e-640.74ANK_REP_REGION domain-containing protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124200contigM-pyrifera_M_contig124200:123..386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score60.8
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog9315.ENSMEUP00000013766
Preferred nameANKRD49
KEGG koko:K21439
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Ankyrin repeat domain 49
EggNOG OGs38EIN@33154,3BHFD@33208,3D060@33213,3JBS2@40674,484QM@7711,497PJ@7742,4K06K@9263,COG0666@1,KOG0512@2759
COG Functional cat.K
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size264
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.4379537-CDS-M-pyrifera_M_contig124200:122..3681622815759.4379537-CDS-M-pyrifera_M_contig124200:122..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124200 123..368 -
1692277556.131015-CDS-M-pyrifera_M_contig124200:122..3681692277556.131015-CDS-M-pyrifera_M_contig124200:122..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124200 123..368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.4481013-UTR-M-pyrifera_M_contig124200:368..3861622815759.4481013-UTR-M-pyrifera_M_contig124200:368..386Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124200 369..386 -
1692277556.1419225-UTR-M-pyrifera_M_contig124200:368..3861692277556.1419225-UTR-M-pyrifera_M_contig124200:368..386Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124200 369..386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124200.4927.1prot_M-pyrifera_M_contig124200.4927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124200 123..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124200.4927.1

>prot_M-pyrifera_M_contig124200.4927.1 ID=prot_M-pyrifera_M_contig124200.4927.1|Name=mRNA_M-pyrifera_M_contig124200.4927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MLVPHANWRPSRDDEDWTALFWACFNGHLDIVKLLVNAGAAVHLMDKQGR
SPLYLSSGWGGEEITSFLLQHNGDVTACNQDG
back to top

mRNA from alignment at M-pyrifera_M_contig124200:123..386-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124200.4927.1 ID=mRNA_M-pyrifera_M_contig124200.4927.1|Name=mRNA_M-pyrifera_M_contig124200.4927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig124200:123..386- (Macrocystis pyrifera P11B4 male)
ATCTCGAAAGCCGTTCTTATGCTGGTCCCACATGCTAACTGGCGCCCCAG CCGCGACGACGAGGATTGGACTGCGCTGTTTTGGGCGTGCTTCAACGGCC ACTTGGATATCGTGAAGCTCCTTGTGAACGCAGGTGCAGCTGTCCACCTG ATGGACAAGCAAGGTCGATCCCCCCTGTACCTCAGCAGTGGCTGGGGAGG AGAGGAAATCACCAGTTTCCTCCTCCAACACAATGGAGACGTCACCGCCT GCAATCAAGACGGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124200:123..386-

>mRNA_M-pyrifera_M_contig124200.4927.1 ID=mRNA_M-pyrifera_M_contig124200.4927.1|Name=mRNA_M-pyrifera_M_contig124200.4927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig124200:123..386- (Macrocystis pyrifera P11B4 male)
ATGCTGGTCCCACATGCTAACTGGCGCCCCAGCCGCGACGACGAGGATTG
GACTGCGCTGTTTTGGGCGTGCTTCAACGGCCACTTGGATATCGTGAAGC
TCCTTGTGAACGCAGGTGCAGCTGTCCACCTGATGGACAAGCAAGGTCGA
TCCCCCCTGTACCTCAGCAGTGGCTGGGGAGGAGAGGAAATCACCAGTTT
CCTCCTCCAACACAATGGAGACGTCACCGCCTGCAATCAAGACGGCATGC
TGGTCCCACATGCTAACTGGCGCCCCAGCCGCGACGACGAGGATTGGACT
GCGCTGTTTTGGGCGTGCTTCAACGGCCACTTGGATATCGTGAAGCTCCT
TGTGAACGCAGGTGCAGCTGTCCACCTGATGGACAAGCAAGGTCGATCCC
CCCTGTACCTCAGCAGTGGCTGGGGAGGAGAGGAAATCACCAGTTTCCTC
CTCCAACACAATGGAGACGTCACCGCCTGCAATCAAGACGGC
back to top