mRNA_M-pyrifera_M_contig1242.4926.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1242.4926.1
Unique NamemRNA_M-pyrifera_M_contig1242.4926.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1242.4926.1 vs. uniprot
Match: D7FL62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL62_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 3.810e-52
Identity = 86/105 (81.90%), Postives = 99/105 (94.29%), Query Frame = 1 
Query:  127 MHGALATLGLVVALMTAAS-AFFVPGPSKIISGRPTRASTSQVIVMGRGDTRTTKGKRMRHTYGKCRPQKKREVVYFDGEVVVKAAPVARRWENIEYDESTLPKP 438
            MHGALATLGLVVA+M + S AF VPGPS+++SGR TRASTSQVIVMGRGDTRTTKGKRMRH+YGKCRPQK++EVVYF+GE+V KAAPVARRWENIEYDE+++PKP
Sbjct:    1 MHGALATLGLVVAMMASVSNAFVVPGPSQVVSGRSTRASTSQVIVMGRGDTRTTKGKRMRHSYGKCRPQKQKEVVYFEGEIVKKAAPVARRWENIEYDEASMPKP 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1242.4926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FL62_ECTSI3.810e-5281.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1242contigM-pyrifera_M_contig1242:22181..25530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_005370.1
Exons3
Model size550
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1242.4926.1prot_M-pyrifera_M_contig1242.4926.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1242 22182..25530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.377841-CDS-M-pyrifera_M_contig1242:22181..224281622815759.377841-CDS-M-pyrifera_M_contig1242:22181..22428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 22182..22428 -
1692277556.0956109-CDS-M-pyrifera_M_contig1242:22181..224281692277556.0956109-CDS-M-pyrifera_M_contig1242:22181..22428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 22182..22428 -
1622815759.388076-CDS-M-pyrifera_M_contig1242:23247..233001622815759.388076-CDS-M-pyrifera_M_contig1242:23247..23300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 23248..23300 -
1692277556.1114316-CDS-M-pyrifera_M_contig1242:23247..233001692277556.1114316-CDS-M-pyrifera_M_contig1242:23247..23300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 23248..23300 -
1622815759.40061-CDS-M-pyrifera_M_contig1242:25281..255301622815759.40061-CDS-M-pyrifera_M_contig1242:25281..25530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 25282..25530 -
1692277556.1211314-CDS-M-pyrifera_M_contig1242:25281..255301692277556.1211314-CDS-M-pyrifera_M_contig1242:25281..25530Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1242 25282..25530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1242.4926.1

>prot_M-pyrifera_M_contig1242.4926.1 ID=prot_M-pyrifera_M_contig1242.4926.1|Name=mRNA_M-pyrifera_M_contig1242.4926.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
EEPPPVPPDPKTLGALGPSLPRATADRSPIRAPRFLRSPAFTMHGALATL
GLVVALMTAASAFFVPGPSKIISGRPTRASTSQVIVMGRGDTRTTKGKRM
RHTYGKCRPQKKREVVYFDGEVVVKAAPVARRWENIEYDESTLPKPQAAV
DSESQSDGAEGGAEEEVVEAAPAEVAAAAAVPF
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mRNA from alignment at M-pyrifera_M_contig1242:22181..25530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1242.4926.1 ID=mRNA_M-pyrifera_M_contig1242.4926.1|Name=mRNA_M-pyrifera_M_contig1242.4926.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3350bp|location=Sequence derived from alignment at M-pyrifera_M_contig1242:22181..25530- (Macrocystis pyrifera P11B4 male)
GAAGAGCCTCCACCCGTACCACCCGACCCAAAGACTCTCGGCGCGCTAGG
CCCAAGTCTTCCTCGTGCTACAGCCGACAGATCTCCCATTCGCGCTCCTC
GCTTTCTGCGGAGTCCGGCTTTTACCATGCACGGAGCCCTCGCCACCCTC
GGTTTGGTCGTTGCCCTCATGACGGCAGCCTCTGCTTTCTTCGTGCCCGG
GCCGTCTAAGATCATCTCTGGCCGACCCACGCGCGCCTCTACCTCCCAGG
TGTGAATGAAGGCACGGTTCGCCCAGGGTAGAAGCTCGGTACCTCTTGAT
TATGGTTTAACGTTTTGTAGCTGAGAGTAGGGGTGCGATTGTCTGTATAC
GTGGTGTGTGCGATTTTGTCCAGTTATGACTGCGTGAGGCTCGCGTTGAC
GTGCAGGTGAGAGGGCGATGCCGATGGGGAGGGGGCGCCGAGACAGCGGT
TGCTTGGTTGAGCCCACGCTGTTTGGAGGGTGTATGGCGTGCTCGTGTAG
GGAAGTATGGTTAGGTGGCTTGCGCGGGTAGCGTGTTTCACGCGGACGGT
GCGGGATGCTCGAAACACAATATAAAAATGTCGAGGACTGGAAATCATGT
GTTTTTTGTAGGTTGCACACGTACCAAGCCACCAAGTCCAACGTCGAATC
CACCTTTGCAATGACGAGTTGACGTCTTGCGTTCGACACAACCCATCGGC
TTCGTTTGGACAGGTGGACTGCTGCTGTGGTGATGTACTGGTACGATACA
CATGTGGATATGCACGTGCCAGGTAGCTAGCTTACTGTAGTAGTCTACAC
CCGTACACAAAATATCAAAGATAGCATAGCTATGGATAATAGTCAGATGT
TGGATTGTAGTGATACAGGCGTCGGGAGTGGGGAGGCATTGCAAGCTTTA
CAGCGGTAGTGAGTACGAGTCGCACGCAGACGACGTCACGGCGGTGATAC
TCTCCACGAAATCGAGGGTTACGTTTGAATTCTGTATGTACGCCGACTGA
CACGCAGCACCAGAGCACGAGGCATCACGTCCAAGTTCCCCTACCTCTCA
GTATCAGACTCTCTACGGGAGATGAATCTGTGAACTCCATCGCGAGATCT
TTTTTGGACAGATGCGTCAAAAGACAGATTGTCAGGTAGAGTTCGAGCCG
AGCTGAAAATTTGCCGCTTCCATCTCTTCCCGGTTATGGGAAACGCACAC
CAACTGGTGCACGTGGTCAAAGCGCAGCAGCCGGCAGCCTTAGCGGAAAT
CCCGGCGATTCTAGCGTCCGCCGTCACACCTCACAAAAGACGTACCATAC
GTACGGTGCACGGTGTCGATCTATTAAACGGAGACTACAGGTCTCTGACG
GACGACCGTCCATTCACAGACTTGACATAATATTAATAGTAATAGTTATA
CGTACTCTTAGCGTTGGGAGTTTCTCAATGTGTACCCCTTGCAAAAGCTT
AATTTTCACTGCCACAACATGAATATATAGCGAGTTCATTCTCGACAGAG
AGCGTGAGAGATGACGAATTGTACGTGATGTGACGCCTGGTGTTGCGTGT
TGGTGGTCGGCGTGTGTGTGATCTGCGTCTCAATTTGAATCCGGTTCATG
GGCGCCGTTCTGTTCGCGAGTCTTACTGTTGTACTGTTGTAGTCTTACCC
TGTGTCTGTCGTACACCGTCGTCGTGTATGCTCGTCAGTGACACAGATAC
TCGACAGACACTCCATGGTACTACTGCTATATATATTACGCATACATCAC
ATTACATTAGGCTGACAGAGTCGGTGAGTGGAACGCGTCGTAAATGGTAC
AGCAGTAGCAACTGGCAGAAGGTGCCATAGACCTCTTTGGGGCAATGTTG
AAATCAGAGTCGAAAAGGGTCGAAAACAACGACGGCTGCAGCAACGGTTA
CACATACCGTTGGTACAGCAGCGACAGAGCACCAATACGGCACCAATCCG
GCGCTGGTTAGTACCCGATTTACAATGCATTCACGACACGCGTGTCACTT
CGGGTGCTATTCTCGATATTTTGATACGTAGATACTACTGTAGACTTGAC
TATGCCTGTATTCATAGTCATGCCTGGTATGATATTTTGATACCTGGAGG
GGGTGAGAGTTCGTGGCGACTCTCACTTTGCTGTCCCATGTATGATACCA
CGTCTAACTGACTGCACGGTGTACGGCCCGCCGTCGTGTCCATGTATCCG
TTTTGTACGGCATGTTATTGTATCGTTCAGGTGATTGTCATGGGGAGGGG
AGACACCCGCACAACAAAGGGCAAGCGCATGAGGTGATCCATCGAGCCAA
CGGCCATTTGCGCGAGTGTAGTTCCTGCCGGTATTTATCTATGATTAGGG
CTGTGAGCTTAATCACGTCATGTTGCTGACCAGTTTTTAGTTGGCTAGGT
ACTACTTTTCAGTTGATTGCGCGCGGTAACTTCCTGACTCCTATGGCGCG
CTTGTGGCTCGGCGTGCTTTTTTGTTTCAAAGACTCGGTCAGTCAGTCGG
CTTACTCCGCCACCCAACTATTGGCAATACCTGGCATTAGTGTAGTTATC
GTGCTGTAGTAAGCCAACTCTCAGCCCTACCTGATTAGGGTCTACTCGTA
CCGCTGCAGTGCATACCTGGTTCTCTAAATGGTGGTGCGTGCTCTCGTGC
CCTCACCCGATGACTTCCCCGCGAAAAAAACACCCAGATAATTTCTCATT
CCTATGTGTGTGTTTAGACTTCCTCGACGTGTATTGTGTCGTCCTTGGCT
ACTCATGGTATCAGGCAGACGAACTATCGTACAGGGCACACGGCGATACT
GTCGAACCCAAACAGGCCTTCTGCCCATCCTTCAACATGCCGTCGGTCCG
CTCCCAAACATACCGTCGGTCAACTCCGAGCATGCCTTCGATCCATCCCA
AGCATGCCATCGGTCCACTGAAAAGATGCCGTCGGATCACCCTCAAACGT
GCCGTCGGTCCACTCCAAACTTGCCGTCGGTCCGCCCCAAACATGCCGTC
GCCCCACCCCCAAACATGCCGCCAGTCCACCCCTAGAATGCCATCGACCC
TCCACCAACACCTACCGACCCCCCCCCCGTGCCACCCTCTCCCCTCTCAC
AGGCACACGTACGGCAAATGCCGCCCTCAGAAGAAGAGGGAGGTCGTTTA
CTTCGACGGTGAAGTCGTTGTCAAAGCGGCCCCCGTTGCACGGAGGTGGG
AGAACATCGAATACGACGAGTCTACCCTACCCAAGCCTCAGGCCGCGGTC
GATAGCGAGAGTCAATCGGATGGCGCCGAGGGGGGCGCGGAGGAGGAGGT
TGTGGAGGCGGCGCCCGCAGAGGTGGCGGCAGCGGCGGCGGTGCCTTTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1242:22181..25530-

>mRNA_M-pyrifera_M_contig1242.4926.1 ID=mRNA_M-pyrifera_M_contig1242.4926.1|Name=mRNA_M-pyrifera_M_contig1242.4926.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig1242:22181..25530- (Macrocystis pyrifera P11B4 male)
GAAGAGCCTCCACCCGTACCACCCGACCCAAAGACTCTCGGCGCGCTAGG
CCCAAGTCTTCCTCGTGCTACAGCCGACAGATCTCCCATTCGCGCTCCTC
GCTTTCTGCGGAGTCCGGCTTTTACCATGCACGGAGCCCTCGCCACCCTC
GGTTTGGTCGTTGCCCTCATGACGGCAGCCTCTGCTTTCTTCGTGCCCGG
GCCGTCTAAGATCATCTCTGGCCGACCCACGCGCGCCTCTACCTCCCAGG
AAGAGCCTCCACCCGTACCACCCGACCCAAAGACTCTCGGCGCGCTAGGC
CCAAGTCTTCCTCGTGCTACAGCCGACAGATCTCCCATTCGCGCTCCTCG
CTTTCTGCGGAGTCCGGCTTTTACCATGCACGGAGCCCTCGCCACCCTCG
GTTTGGTCGTTGCCCTCATGACGGCAGCCTCTGCTTTCTTCGTGCCCGGG
CCGTCTAAGATCATCTCTGGCCGACCCACGCGCGCCTCTACCTCCCAGGT
GATTGTCATGGGGAGGGGAGACACCCGCACAACAAAGGGCAAGCGCATGA
GGTGATTGTCATGGGGAGGGGAGACACCCGCACAACAAAGGGCAAGCGCA
TGAGGCACACGTACGGCAAATGCCGCCCTCAGAAGAAGAGGGAGGTCGTT
TACTTCGACGGTGAAGTCGTTGTCAAAGCGGCCCCCGTTGCACGGAGGTG
GGAGAACATCGAATACGACGAGTCTACCCTACCCAAGCCTCAGGCCGCGG
TCGATAGCGAGAGTCAATCGGATGGCGCCGAGGGGGGCGCGGAGGAGGAG
GTTGTGGAGGCGGCGCCCGCAGAGGTGGCGGCAGCGGCGGCGGTGCCTTT
CGCACACGTACGGCAAATGCCGCCCTCAGAAGAAGAGGGAGGTCGTTTAC
TTCGACGGTGAAGTCGTTGTCAAAGCGGCCCCCGTTGCACGGAGGTGGGA
GAACATCGAATACGACGAGTCTACCCTACCCAAGCCTCAGGCCGCGGTCG
ATAGCGAGAGTCAATCGGATGGCGCCGAGGGGGGCGCGGAGGAGGAGGTT
GTGGAGGCGGCGCCCGCAGAGGTGGCGGCAGCGGCGGCGGTGCCTTTC
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