mRNA_M-pyrifera_M_contig124188.4922.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124188.4922.1
Unique NamemRNA_M-pyrifera_M_contig124188.4922.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124188.4922.1 vs. uniprot
Match: A0A7S1G944_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G944_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.560e-13
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1 
Query:    1 LCTDCPGGSYCTGGSSEPLAEAGFWRVNRTAFVECVPSSACLRD--NQCEEGYRGETCALCLVGSHYRNVWTRECTVCPAAASW--YLAGFVIGLL 276
            LC+ CP G  C GGS++P  + G+WR  R  F+ C P++AC     + C +GY G+ C LC    +YR    +EC  CP  A W  +LA F++ +L
Sbjct: 1282 LCSPCPVGGVCEGGSADPYPQPGYWRAKRDLFLSCTPTAACPGGVASPCADGYDGDACTLCA-DKYYRL--RQECLPCPDTA-WLMFLAFFLVLVL 1373
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124188.4922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1G944_9STRA2.560e-1339.58Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124188contigM-pyrifera_M_contig124188:68..352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1e-07
Seed eggNOG ortholog529818.AMSG_01814T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
EggNOG OGs28KSF@1,2QT8K@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.1533778-CDS-M-pyrifera_M_contig124188:67..3521622815759.1533778-CDS-M-pyrifera_M_contig124188:67..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124188 68..352 -
1692277555.9698486-CDS-M-pyrifera_M_contig124188:67..3521692277555.9698486-CDS-M-pyrifera_M_contig124188:67..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124188 68..352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124188.4922.1prot_M-pyrifera_M_contig124188.4922.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124188 68..352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124188.4922.1

>prot_M-pyrifera_M_contig124188.4922.1 ID=prot_M-pyrifera_M_contig124188.4922.1|Name=mRNA_M-pyrifera_M_contig124188.4922.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
LCTDCPGGSYCTGGSSEPLAEAGFWRVNRTAFVECVPSSACLRDNQCEEG
YRGETCALCLVGSHYRNVWTRECTVCPAAASWYLAGFVIGLLGVM
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mRNA from alignment at M-pyrifera_M_contig124188:68..352-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124188.4922.1 ID=mRNA_M-pyrifera_M_contig124188.4922.1|Name=mRNA_M-pyrifera_M_contig124188.4922.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig124188:68..352- (Macrocystis pyrifera P11B4 male)
CTGTGCACGGACTGTCCGGGCGGCTCGTACTGCACAGGAGGCAGCAGCGA
GCCGCTGGCGGAGGCGGGGTTCTGGCGGGTGAACCGCACAGCGTTTGTGG
AGTGTGTGCCGTCGTCTGCGTGCCTGCGCGACAACCAGTGCGAGGAGGGG
TATCGCGGCGAGACGTGCGCGCTGTGCTTGGTGGGCAGCCACTACCGCAA
CGTGTGGACTCGTGAGTGCACGGTGTGCCCGGCCGCTGCGTCATGGTATC
TGGCGGGCTTTGTGATTGGCCTGCTGGGGGTCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124188:68..352-

>mRNA_M-pyrifera_M_contig124188.4922.1 ID=mRNA_M-pyrifera_M_contig124188.4922.1|Name=mRNA_M-pyrifera_M_contig124188.4922.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig124188:68..352- (Macrocystis pyrifera P11B4 male)
CTGTGCACGGACTGTCCGGGCGGCTCGTACTGCACAGGAGGCAGCAGCGA
GCCGCTGGCGGAGGCGGGGTTCTGGCGGGTGAACCGCACAGCGTTTGTGG
AGTGTGTGCCGTCGTCTGCGTGCCTGCGCGACAACCAGTGCGAGGAGGGG
TATCGCGGCGAGACGTGCGCGCTGTGCTTGGTGGGCAGCCACTACCGCAA
CGTGTGGACTCGTGAGTGCACGGTGTGCCCGGCCGCTGCGTCATGGTATC
TGGCGGGCTTTGTGATTGGCCTGCTGGGGGTCATGCTGTGCACGGACTGT
CCGGGCGGCTCGTACTGCACAGGAGGCAGCAGCGAGCCGCTGGCGGAGGC
GGGGTTCTGGCGGGTGAACCGCACAGCGTTTGTGGAGTGTGTGCCGTCGT
CTGCGTGCCTGCGCGACAACCAGTGCGAGGAGGGGTATCGCGGCGAGACG
TGCGCGCTGTGCTTGGTGGGCAGCCACTACCGCAACGTGTGGACTCGTGA
GTGCACGGTGTGCCCGGCCGCTGCGTCATGGTATCTGGCGGGCTTTGTGA
TTGGCCTGCTGGGGGTCATG
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