mRNA_M-pyrifera_M_contig124053.4910.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124053.4910.1
Unique NamemRNA_M-pyrifera_M_contig124053.4910.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A5A8DV42_CAFRO (Aa_trans domain-containing protein n=6 Tax=Sar TaxID=2698737 RepID=A0A5A8DV42_CAFRO)

HSP 1 Score: 101 bits (251), Expect = 4.370e-22
Identity = 64/162 (39.51%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLML-ADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSGDK--WWAGREARGLVILSVCGL-LVALCLFPNLASFQATSGVAVTAIVFSAGVI 474
            T++ +  N VGAGMLSLPW + QA+ +PG   +    AL A S++++ A A +    +T++ELG  A G   G+        YTLGSCISY VLL D++   +EG+SG +  WW   E+R  +IL + GL L+ + LF +L+ F+ TS +AV  ++ + G++
Sbjct:   40 TVMGIANNVVGAGMLSLPWCLMQASLIPGLTLMVGISALAALSVVVICASADLAGGVYTFKELGARAVGPGFGVFLQVVVALYTLGSCISYAVLLLDFIPNILEGISGQQGEWW---ESRWFIILVLAGLVLLPMSLFRDLSRFEFTSTIAVVCVMLTVGIL 198          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A1Q9CT04_SYMMI (HECT-type E3 ubiquitin transferase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CT04_SYMMI)

HSP 1 Score: 63.5 bits (153), Expect = 9.880e-9
Identity = 50/154 (32.47%), Postives = 83/154 (53.90%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGA-LNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSGDKWWAGREARGLVILSVCGLLVALCLFPNLASFQATS--GVAVTAI 453
            T++N++ N VGAG+L++  V  Q  +V G L I LF A +  G  L++     +++A T+REL   A G+            +TL SC+ Y+ ++ D+      GL  D  +A R    ++++S+ G+   LCL+ NL   + TS  G+ +TAI
Sbjct: 3562 TVINLLKNMVGAGLLNV-CVAFQYASVLGGLLIMLFSAFVCTGGFLLIGYCCSKTQAKTFRELWRSAMGQNTEKTVDVVLFFHTLFSCVGYVTMIGDFCIKSASGLMPDSVFARRRESSILVISLFGIFP-LCLYKNLEPLKYTSVVGLFITAI 3713          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A812VM28_9DINO (AVT7 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812VM28_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-8
Identity = 44/153 (28.76%), Postives = 79/153 (51.63%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSGDKWWAGREARGLVILSVCGLLVALCLFPNLASFQATS--GVAVTAI 453
            T++N++ N VGAG+L++      A+ + G L +     +  G  L++     +++A T+REL   A G+            +TL SC+ Y+ ++ D+      GL  D  +A R    ++++S+ G+   LCL+ NL   + TS  G+ +TAI
Sbjct:   27 TVINLLKNMVGAGLLNVCVAFQYASVLGGLLIMLFSSFVCTGGFLLIGYCCSKTQAKTFRELWRSAMGQNTEKTVDVVLFFHTLFSCVGYVTMIGDFCIKSASGLMPDSIFARRRESSILVISLFGIFP-LCLYKNLEPLKYTSVVGLFITAI 178          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A7S1M2D1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1M2D1_NEODS)

HSP 1 Score: 59.3 bits (142), Expect = 2.480e-7
Identity = 35/107 (32.71%), Postives = 59/107 (55.14%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSG 321
            T +N+++N VGAG+LS+P   +  + +P    + LF  ++A SML+L   A R+  +TY++L E       G +   A   YT   CI+Y   + D + P ++ L+G
Sbjct:   67 TAINIISNVVGAGILSVPGAFAGMSVIPATFMLTLFAIMSAYSMLLLTLCAQRTGRFTYKDLIEYGWSSFYGRLFDGAIFIYTFACCIAYAHAVGDSMSPVMKTLTG 173          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: D8M7L8_BLAHO (Aa_trans domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7L8_BLAHO)

HSP 1 Score: 54.7 bits (130), Expect = 8.460e-6
Identity = 41/145 (28.28%), Postives = 70/145 (48.28%), Query Frame = 1
Query:   22 NGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSD-------WVGPGVEGLSGDKWWAGREARGLVILSVC-GLLVALCLFPNLASFQATS 432
            N +GAG+++LP+ +SQ T VPG L +     + + S  ++       + +TY+E+G  A G+  G++       YT  SC SY V++ D       +  P VE L         ++R +V+  VC   +  LC+   + S +  S
Sbjct:    4 NVLGAGLVALPYSISQCTLVPGILLLIFMAFVASFSQYVIVSTCRLVDKYTYKEVGIAALGKTGGILISLIMLLYTTLSCTSYFVIIGDLLLGICGYFFPNVEFL---------QSRSIVVPCVCVAFIFPLCMMRTVDSLRYVS 139          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A7S0FVE1_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FVE1_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 2.370e-5
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 1
Query:   10 NVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFA---TGAYTLGSCISYIVLLSDWVGPGVE-GLSGDKWWAGREARGLVILSVCGLLVALCLFPNLA-SFQATSGVAVTAIVF 459
            N++T G+G G+LSLPW  + A+ +P    IAL  ALNA ++++L  AA R +A+    L     GR   L   F    T A      + Y+V+++D + P V  GL  +   A    R L++ +    ++ LC       SF +  G+AV   +F
Sbjct:   78 NLITAGLGTGILSLPWGTAGASLLPSVAMIALVMALNAATVMILILAAERWQAFDLGGLLAHLPGRYSFLAQAFCNTLTWASVFLCLVGYMVVIADSLEPLVSLGLGSEPGAAEAHVRPLLMAAGACAVLPLCFLDQARLSFSSGLGIAVNVYMF 232          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A7S1FK14_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FK14_NOCSC)

HSP 1 Score: 53.1 bits (126), Expect = 2.960e-5
Identity = 43/153 (28.10%), Postives = 80/153 (52.29%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSGDKWWAGREARGLVILSVCGLLVALCLFPNLASFQATS--GVAVTAI 453
            T+VN++ N VGAG+L++      ++ V G + + L   L     L++     +++A T+R L  ++ G+  G++       +TL SC+ Y+ L+ D+    + GL     +A      ++ ++V  +L  L L  NL+S + TS  G+AVT +
Sbjct:   68 TMVNLLKNMVGAGLLNVSVAFKYSSVVGGLIDMILSAFLCTCGFLLIGYCCSKTKATTFRSLIVMSIGKKAGVLMDVLIFFHTLFSCVGYVTLIGDFTTKSMGGLFPGCIFATSRMASILTITVF-VLFPLSLLRNLSSLKFTSALGLAVTGV 219          
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Match: A0A7S2QEV1_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QEV1_9DINO)

HSP 1 Score: 53.1 bits (126), Expect = 3.120e-5
Identity = 44/153 (28.76%), Postives = 75/153 (49.02%), Query Frame = 1
Query:    1 TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADAAMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGPGVEGLSGDKWWAGREARGLVILSVCGLLVALCLFPNLASFQATS--GVAVTAI 453
            T+VN++ N VGAG+L++      A+ V G L +     +     L++     ++ A T+R+L   + G         A   +TL SC+ YI ++ D+     EGL      A R    + +++V  +   LCL+  L S + TS  G+A+TA+
Sbjct:   25 TVVNLLKNMVGAGLLNVCIAFQYASVVGGTLVMMYSAFVCTAGFLVIGYCCSKTGARTFRDLWRTSLGSSSEKAVDVALFFHTLFSCVGYITMIGDFSVKSAEGLLPGTVLAERREVSICLITVLAIFP-LCLYKKLDSLKHTSVIGLAITAV 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124053.4910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5A8DV42_CAFRO4.370e-2239.51Aa_trans domain-containing protein n=6 Tax=Sar Tax... [more]
A0A1Q9CT04_SYMMI9.880e-932.47HECT-type E3 ubiquitin transferase n=4 Tax=Symbiod... [more]
A0A812VM28_9DINO1.070e-828.76AVT7 protein n=2 Tax=Symbiodinium TaxID=2949 RepID... [more]
A0A7S1M2D1_NEODS2.480e-732.71Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
D8M7L8_BLAHO8.460e-628.28Aa_trans domain-containing protein n=1 Tax=Blastoc... [more]
A0A7S0FVE1_9DINO2.370e-531.61Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S1FK14_NOCSC2.960e-528.10Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S2QEV1_9DINO3.120e-528.76Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124053contigM-pyrifera_M_contig124053:38..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog5759.rna_EHI_129510-1
KEGG koko:K14207,ko:K14992,ko:K14993,ko:K14997
KEGG TC2.A.18.6,2.A.18.6.4,2.A.18.6.5,2.A.18.6.8
KEGG Pathwayko04724,ko04727,ko04974,map04724,map04727,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0006950,GO:0006979,GO:0008150,GO:0008509,GO:0008514,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0012505,GO:0015075,GO:0015171,GO:0015318,GO:0015711,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0032870,GO:0033554,GO:0034220,GO:0034599,GO:0034614,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071702,GO:0071705,GO:0071731,GO:0071732,GO:0097366,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1903825,GO:1905039
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.5996397-CDS-M-pyrifera_M_contig124053:37..5111622815758.5996397-CDS-M-pyrifera_M_contig124053:37..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124053 38..511 -
1692277555.734488-CDS-M-pyrifera_M_contig124053:37..5111692277555.734488-CDS-M-pyrifera_M_contig124053:37..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124053 38..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124053.4910.1prot_M-pyrifera_M_contig124053.4910.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124053 38..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124053.4910.1

>prot_M-pyrifera_M_contig124053.4910.1 ID=prot_M-pyrifera_M_contig124053.4910.1|Name=mRNA_M-pyrifera_M_contig124053.4910.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
TIVNVVTNGVGAGMLSLPWVMSQATTVPGFLAIALFGALNAGSMLMLADA
AMRSEAWTYRELGEIAGGRVLGLVSHFATGAYTLGSCISYIVLLSDWVGP
GVEGLSGDKWWAGREARGLVILSVCGLLVALCLFPNLASFQATSGVAVTA
IVFSAGVI
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mRNA from alignment at M-pyrifera_M_contig124053:38..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124053.4910.1 ID=mRNA_M-pyrifera_M_contig124053.4910.1|Name=mRNA_M-pyrifera_M_contig124053.4910.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig124053:38..511- (Macrocystis pyrifera P11B4 male)
ACAATTGTGAATGTGGTGACGAATGGGGTAGGTGCTGGAATGTTGTCCTT GCCGTGGGTGATGAGCCAAGCAACCACTGTTCCCGGGTTTTTAGCGATTG CGTTGTTTGGGGCTTTGAACGCGGGGTCTATGCTGATGCTTGCGGATGCT GCGATGCGCAGTGAGGCGTGGACGTACCGGGAGCTTGGAGAAATCGCAGG AGGCCGGGTGTTGGGATTGGTGAGCCACTTTGCGACTGGCGCGTACACGC TGGGGTCTTGTATTTCGTATATTGTGCTTTTGAGTGACTGGGTGGGTCCG GGGGTGGAGGGTTTGAGTGGAGATAAGTGGTGGGCCGGGCGCGAAGCGAG GGGGTTGGTTATTCTGTCAGTTTGTGGCTTGCTGGTGGCGCTGTGTCTCT TTCCAAACCTCGCATCTTTCCAGGCCACGAGCGGAGTGGCGGTGACTGCG ATCGTATTTTCCGCTGGGGTGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124053:38..511-

>mRNA_M-pyrifera_M_contig124053.4910.1 ID=mRNA_M-pyrifera_M_contig124053.4910.1|Name=mRNA_M-pyrifera_M_contig124053.4910.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig124053:38..511- (Macrocystis pyrifera P11B4 male)
ACAATTGTGAATGTGGTGACGAATGGGGTAGGTGCTGGAATGTTGTCCTT
GCCGTGGGTGATGAGCCAAGCAACCACTGTTCCCGGGTTTTTAGCGATTG
CGTTGTTTGGGGCTTTGAACGCGGGGTCTATGCTGATGCTTGCGGATGCT
GCGATGCGCAGTGAGGCGTGGACGTACCGGGAGCTTGGAGAAATCGCAGG
AGGCCGGGTGTTGGGATTGGTGAGCCACTTTGCGACTGGCGCGTACACGC
TGGGGTCTTGTATTTCGTATATTGTGCTTTTGAGTGACTGGGTGGGTCCG
GGGGTGGAGGGTTTGAGTGGAGATAAGTGGTGGGCCGGGCGCGAAGCGAG
GGGGTTGGTTATTCTGTCAGTTTGTGGCTTGCTGGTGGCGCTGTGTCTCT
TTCCAAACCTCGCATCTTTCCAGGCCACGAGCGGAGTGGCGGTGACTGCG
ATCGTATTTTCCGCTGGGGTGATTACAATTGTGAATGTGGTGACGAATGG
GGTAGGTGCTGGAATGTTGTCCTTGCCGTGGGTGATGAGCCAAGCAACCA
CTGTTCCCGGGTTTTTAGCGATTGCGTTGTTTGGGGCTTTGAACGCGGGG
TCTATGCTGATGCTTGCGGATGCTGCGATGCGCAGTGAGGCGTGGACGTA
CCGGGAGCTTGGAGAAATCGCAGGAGGCCGGGTGTTGGGATTGGTGAGCC
ACTTTGCGACTGGCGCGTACACGCTGGGGTCTTGTATTTCGTATATTGTG
CTTTTGAGTGACTGGGTGGGTCCGGGGGTGGAGGGTTTGAGTGGAGATAA
GTGGTGGGCCGGGCGCGAAGCGAGGGGGTTGGTTATTCTGTCAGTTTGTG
GCTTGCTGGTGGCGCTGTGTCTCTTTCCAAACCTCGCATCTTTCCAGGCC
ACGAGCGGAGTGGCGGTGACTGCGATCGTATTTTCCGCTGGGGTGATT
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