mRNA_M-pyrifera_M_contig124006.4900.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124006.4900.1
Unique NamemRNA_M-pyrifera_M_contig124006.4900.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: UPI000644AA9D (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644AA9D)

HSP 1 Score: 110 bits (275), Expect = 7.650e-27
Identity = 51/127 (40.16%), Postives = 84/127 (66.14%), Query Frame = 1 
Query:    1 YVYYMLAAYLAFVFVAPRVVRLVRRQGFRLKWVTAAHNLTLCVWSLVMAAGFIYD-FCISQQSVYELS---CVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            +++  +A YL+ ++    ++   + +GF L+W +A HNL LCVWSLVM  G  YD F ++  + Y ++   C P      GR+Y+W +L+++SK YE +DT+I++L++K L FLH++HHSIV+L  W
Sbjct:   59 FIFMCIAVYLSIIYGTKLLLSNPKTRGFNLRWFSAIHNLILCVWSLVMCVGITYDAFNMAMNTEYGINGIFCSPKSNPISGRIYYWHYLYFVSKFYEFIDTIIIVLKKKPLIFLHIWHHSIVVLIVW 185
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: Q7KWQ5_DICDI (Elongation of fatty acids protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q7KWQ5_DICDI)

HSP 1 Score: 104 bits (259), Expect = 1.970e-24
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 1 
Query:   76 QGFRLKWVTAAHNLTLCVWSLVMAAGFIYD----FCISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYWMGTSGQA 390
            +G+RL  ++  HNL LCVWS VM AG  YD    F  S+  +  L C P      GR+++W +L++ISK YE +DT+I++L+R+ L FLH++HH+IV+L  W    G A
Sbjct:   89 KGWRLGMISGIHNLILCVWSFVMCAGLSYDLLLLFTSSEHGINALFCSPESNPLTGRIFYWHYLYFISKFYEFIDTLIIVLKRRELIFLHIWHHAIVVLIVWTWLPGVA 197
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: A0A7S0N1Y2_9CRYP (Elongation of fatty acids protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N1Y2_9CRYP)

HSP 1 Score: 101 bits (252), Expect = 9.390e-24
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:   22 AYLAFVFVAPRVVRLVRRQGFRLKWVTAAHNLTLCVWSLVMAAGFIYDFCISQQSV--YELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYWMGTSG 384
            AY++ +F+  R ++   R+  +L+W+ A HN  L  +SL +  G +Y+  ++ Q +  Y + C    T   GRLYFW +LFY+SK YE LDTV ++L++K L FLH +HH+IV L  WMG  G
Sbjct:   24 AYISTIFMLKRFMQ--NREAMKLRWLCAIHNFGLAFFSLAVLLGQLYETVLAAQRIGAYNVFCWQEPTPPNGRLYFWSYLFYLSKYYEFLDTVFIVLKKKPLDFLHCYHHAIVPLSAWMGFKG 144
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: F4Q0Y2_CAVFA (Elongation of fatty acids protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q0Y2_CAVFA)

HSP 1 Score: 101 bits (252), Expect = 2.540e-23
Identity = 50/127 (39.37%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:    1 YVYYMLAAYLAFVFVAPRVVRLVRRQGFRLKWVTAAHNLTLCVWSLVMAAGFIYD-FCISQQSVYELSCV---PIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            +++  + +YL  V+     +   + +GF L +V+A HNL LC WSLVM  G  YD + I+  + + ++C+   P      GR+++W +L++ISK YE LDT+I++L++K L FLH++HHSIV+L  W
Sbjct:   60 FIFMAIISYLLTVYTIKAAMSNSKLKGFSLGYVSAIHNLILCGWSLVMVLGVAYDAYLIATTTSHGINCIFCSPKSNPFSGRIFYWHYLYFISKFYEFLDTIIIVLKKKPLIFLHIWHHSIVVLIVW 186
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: F0Z9R5_DICPU (Elongation of fatty acids protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z9R5_DICPU)

HSP 1 Score: 98.2 bits (243), Expect = 3.880e-22
Identity = 41/102 (40.20%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   76 QGFRLKWVTAAHNLTLCVWSLVMAAGFIYD----FCISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            +G++L +V+  HNL LC+WSL M  G  YD    F  ++  +  L C P      GR+++W +++++SK YE +DT+I++L+R++L FLH++HH+IV+L  W
Sbjct:   86 KGWKLGFVSGIHNLILCIWSLFMWVGISYDLFILFTTTEHGINALFCSPKSNPITGRIFYWHYIYFVSKFYEFIDTLIIVLKRRQLIFLHIWHHAIVVLIVW 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: D3BPA0_POLPP (Elongation of fatty acids protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BPA0_POLPP)

HSP 1 Score: 97.8 bits (242), Expect = 5.270e-22
Identity = 46/107 (42.99%), Postives = 70/107 (65.42%), Query Frame = 1 
Query:   76 QGFRLKWVTAAHNLTLCVWSLVMAAGFIYD-FCISQQSVYELS---CVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYWMGTSG 384
            +G+ L+  +A HNL LCVWSL+M  G  YD F ++  S Y +    C P      GR+++W +L+++SK YE +DT+I++L++K L FLH++HHSIV+L  W    G
Sbjct:   84 KGWNLRGFSALHNLILCVWSLIMVLGVTYDAFQLAFNSEYGVDGFFCSPKSNPISGRIFYWHYLYFVSKFYEFIDTIIIVLKKKPLIFLHIWHHSIVVLIVWTWLPG 190
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BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: A0A151Z710_9MYCE (Elongation of fatty acids protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z710_9MYCE)

HSP 1 Score: 97.1 bits (240), Expect = 8.800e-22
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   73 RQGFRLKWVTAAHNLTLCVWSLVMAAGFIYDFC---ISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            R+ F LKWVTA HN  LC+WSL+M  G +Y+      +   ++ +  V  G    G  Y+W ++FYISK YEL DTVI++L++K L FLHV+HH IV+   W
Sbjct:   68 REAFSLKWVTALHNAILCLWSLLMCVGVVYEVLKRVTTDGGLFTICEVAPGFNQ-GPAYYWSYIFYISKFYELFDTVIIVLKKKDLIFLHVYHHCIVVWLCW 168
[Close]
BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: Y2012_DICDI (Putative elongation of fatty acids protein DDB_G0272012 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Y2012_DICDI)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-21
Identity = 50/120 (41.67%), Postives = 73/120 (60.83%), Query Frame = 1 
Query:   16 LAAYLAFVFVAPRVVRLVRRQGFRLKWVTAAHNLTLCVWSLVMAAGFIYDFC--ISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            ++ YL  +F    ++R   R+ F LK+V+  HN  LC+WSLVM  G +Y+    I+ +      C  +     G  Y+W ++FYISK YELLDTVI++L++K L FLHV+HH IV+   W
Sbjct:   58 ISLYLVIIFSIKFLMR--NRKPFSLKYVSILHNAILCIWSLVMCVGILYEVIKRITAEGPLFTVCETVSGFDKGPAYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCIVVWLCW 175
[Close]
BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: A0A8J4V3R8_9MYCE (Elongation of fatty acids protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V3R8_9MYCE)

HSP 1 Score: 96.3 bits (238), Expect = 1.810e-21
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:   73 RQGFRLKWVTAAHNLTLCVWSLVMAAGFIYDFC--ISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYW 369
            R+ F LK+VT  HN  LC+WSL M  G +Y++   IS +      C      + G  Y+W ++FYISK YELLDTVI++L++K L FLHV+HH +V+   W
Sbjct:   76 RKPFSLKYVTIIHNAILCLWSLAMCVGIVYEYMKRISSEGPLFTFCETSPGFNQGTSYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCVVVWLCW 176
[Close]
BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Match: A0A8J9WL16_9CHLO (Elongation of fatty acids protein DDB_G0272012 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WL16_9CHLO)

HSP 1 Score: 94.4 bits (233), Expect = 4.080e-21
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   94 WVTAAHNLTLCVWSLVMAAGFIYD---FCISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRRKRLSFLHVFHHSIVLLQYWM 372
            W+ A HNL LC+ SL+M  G  Y+       + S+  L C+  GT   G LYFW + +Y+SK YE LDTV+L+L+ K LSFLHVFHHS+V++  ++
Sbjct:   48 WIAATHNLILCIGSLIMFIGTAYESAQVASDKNSIRWLFCLEPGTPMKGALYFWSYTYYLSKYYEFLDTVLLVLKAKPLSFLHVFHHSVVVVMSFL 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124006.4900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000644AA9D7.650e-2740.16hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
Q7KWQ5_DICDI1.970e-2444.04Elongation of fatty acids protein n=1 Tax=Dictyost... [more]
A0A7S0N1Y2_9CRYP9.390e-2441.46Elongation of fatty acids protein (Fragment) n=1 T... [more]
F4Q0Y2_CAVFA2.540e-2339.37Elongation of fatty acids protein n=1 Tax=Cavender... [more]
F0Z9R5_DICPU3.880e-2240.20Elongation of fatty acids protein n=1 Tax=Dictyost... [more]
D3BPA0_POLPP5.270e-2242.99Elongation of fatty acids protein n=1 Tax=Polyspho... [more]
A0A151Z710_9MYCE8.800e-2246.08Elongation of fatty acids protein n=1 Tax=Tieghemo... [more]
Y2012_DICDI1.270e-2141.67Putative elongation of fatty acids protein DDB_G02... [more]
A0A8J4V3R8_9MYCE1.810e-2145.54Elongation of fatty acids protein n=1 Tax=Polyspho... [more]
A0A8J9WL16_9CHLO4.080e-2146.88Elongation of fatty acids protein DDB_G0272012 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124006contigM-pyrifera_M_contig124006:82..471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue2.4e-20
Seed eggNOG ortholog44689.DDB0252835
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K10249
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,map00062,map01110
KEGG ModuleM00415
Hectar predicted targeting categorysignal peptide
GOsGO:0000038,GO:0003674,GO:0003824,GO:0004312,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006643,GO:0006665,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009922,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016740,GO:0016746,GO:0016747,GO:0019367,GO:0019368,GO:0019752,GO:0030148,GO:0030176,GO:0030497,GO:0031224,GO:0031227,GO:0031984,GO:0032787,GO:0034625,GO:0034626,GO:0042175,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046467,GO:0071704,GO:0072330,GO:0098827,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.GNS1/SUR4 family
EggNOG OGs3XCAX@554915,KOG3071@1,KOG3071@2759
EC2.3.1.199
COG Functional cat.I
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Exons1
Model size390
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.1763656-CDS-M-pyrifera_M_contig124006:81..4591622815758.1763656-CDS-M-pyrifera_M_contig124006:81..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124006 82..459 -
1692277555.5515225-CDS-M-pyrifera_M_contig124006:81..4591692277555.5515225-CDS-M-pyrifera_M_contig124006:81..459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124006 82..459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.1888046-UTR-M-pyrifera_M_contig124006:459..4711622815758.1888046-UTR-M-pyrifera_M_contig124006:459..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124006 460..471 -
1692277555.5643594-UTR-M-pyrifera_M_contig124006:459..4711692277555.5643594-UTR-M-pyrifera_M_contig124006:459..471Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124006 460..471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124006.4900.1prot_M-pyrifera_M_contig124006.4900.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124006 82..459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124006.4900.1

>prot_M-pyrifera_M_contig124006.4900.1 ID=prot_M-pyrifera_M_contig124006.4900.1|Name=mRNA_M-pyrifera_M_contig124006.4900.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MLAAYLAFVFVAPRVVRLVRRQGFRLKWVTAAHNLTLCVWSLVMAAGFIY
DFCISQQSVYELSCVPIGTRHVGRLYFWFFLFYISKMYELLDTVILILRR
KRLSFLHVFHHSIVLLQYWMGTSGQA
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mRNA from alignment at M-pyrifera_M_contig124006:82..471-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124006.4900.1 ID=mRNA_M-pyrifera_M_contig124006.4900.1|Name=mRNA_M-pyrifera_M_contig124006.4900.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig124006:82..471- (Macrocystis pyrifera P11B4 male)
TACGTCTACTACATGCTGGCCGCCTACCTGGCCTTCGTCTTCGTGGCGCC
CCGCGTCGTGCGGCTGGTGCGGCGCCAGGGCTTCCGCCTCAAGTGGGTCA
CTGCCGCGCACAACCTCACCCTCTGCGTGTGGTCGCTGGTCATGGCCGCA
GGCTTCATCTACGACTTCTGCATCTCCCAGCAGTCTGTCTATGAGCTCTC
GTGCGTGCCGATTGGGACGCGGCACGTGGGCAGGCTCTACTTCTGGTTCT
TCCTCTTCTACATCAGCAAGATGTACGAGCTGCTCGACACCGTCATCCTC
ATCCTGCGAAGGAAGCGCCTGAGCTTCCTGCACGTGTTCCACCACAGCAT
CGTCCTCCTACAGTACTGGATGGGCACCAGCGGCCAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124006:82..471-

>mRNA_M-pyrifera_M_contig124006.4900.1 ID=mRNA_M-pyrifera_M_contig124006.4900.1|Name=mRNA_M-pyrifera_M_contig124006.4900.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig124006:82..471- (Macrocystis pyrifera P11B4 male)
ATGCTGGCCGCCTACCTGGCCTTCGTCTTCGTGGCGCCCCGCGTCGTGCG
GCTGGTGCGGCGCCAGGGCTTCCGCCTCAAGTGGGTCACTGCCGCGCACA
ACCTCACCCTCTGCGTGTGGTCGCTGGTCATGGCCGCAGGCTTCATCTAC
GACTTCTGCATCTCCCAGCAGTCTGTCTATGAGCTCTCGTGCGTGCCGAT
TGGGACGCGGCACGTGGGCAGGCTCTACTTCTGGTTCTTCCTCTTCTACA
TCAGCAAGATGTACGAGCTGCTCGACACCGTCATCCTCATCCTGCGAAGG
AAGCGCCTGAGCTTCCTGCACGTGTTCCACCACAGCATCGTCCTCCTACA
GTACTGGATGGGCACCAGCGGCCAGGCCATGCTGGCCGCCTACCTGGCCT
TCGTCTTCGTGGCGCCCCGCGTCGTGCGGCTGGTGCGGCGCCAGGGCTTC
CGCCTCAAGTGGGTCACTGCCGCGCACAACCTCACCCTCTGCGTGTGGTC
GCTGGTCATGGCCGCAGGCTTCATCTACGACTTCTGCATCTCCCAGCAGT
CTGTCTATGAGCTCTCGTGCGTGCCGATTGGGACGCGGCACGTGGGCAGG
CTCTACTTCTGGTTCTTCCTCTTCTACATCAGCAAGATGTACGAGCTGCT
CGACACCGTCATCCTCATCCTGCGAAGGAAGCGCCTGAGCTTCCTGCACG
TGTTCCACCACAGCATCGTCCTCCTACAGTACTGGATGGGCACCAGCGGC
CAGGCC
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