mRNA_M-pyrifera_M_contig12399.4898.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12399.4898.1
Unique NamemRNA_M-pyrifera_M_contig12399.4898.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: D8LNW5_ECTSI (Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW5_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 6.960e-134
Identity = 195/210 (92.86%), Postives = 203/210 (96.67%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKKVRNE 630
            +SGE DLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVR  FKNPTPFLRTREFLWQEGHTAHASF +AD+MV+QAL+LYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYED+ GE AIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIP+VTKKV+ E
Sbjct:  501 KSGEDDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRWEFKNPTPFLRTREFLWQEGHTAHASFEDADKMVIQALELYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDENGEQAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPIVTKKVKLE 710
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A835YT63_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT63_9STRA)

HSP 1 Score: 358 bits (919), Expect = 2.880e-115
Identity = 170/206 (82.52%), Postives = 186/206 (90.29%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKK 618
            +SGE+DL EPIAVRPTSETIMYPAF+RWIRSHRDLPL LNQWSNVVR  FK+PTPFLR+REFLWQEGHTAH +F EA+EMV Q LDLYRRVYEELLAVPVI GTKTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I +E   G   IPWQTSWG+TTR++GVCVMCHGDDQGLVLPPRVAPLQ VI+PVVTKK
Sbjct:  506 KSGETDLAEPIAVRPTSETIMYPAFARWIRSHRDLPLCLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHTTFEEAEEMVFQILDLYRRVYEELLAVPVIKGTKTELEKFAGGFRTTTVEAYITGSGRAIQGATSHNLGQNFGKMFNINFEAKDGTSKIPWQTSWGITTRSIGVCVMCHGDDQGLVLPPRVAPLQVVIVPVVTKK 711
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: B7GC21_PHATC (Proline--tRNA ligase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GC21_PHATC)

HSP 1 Score: 344 bits (882), Expect = 1.370e-114
Identity = 162/210 (77.14%), Postives = 186/210 (88.57%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKKVRNE 630
            +SGE DL  PIAVRPTSETIMYPA+S WI+SHRDLPLKLNQWSNVVR  FK PTPFLRTREFLWQEGHTAHA+F +AD  VM+AL+LYR VYE+LLAVPV+ G KTE EKFAGG +TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF+I ++++KGE  IPWQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQ VI+P+++KK+  E
Sbjct:   70 RSGEGDLARPIAVRPTSETIMYPAYSDWIKSHRDLPLKLNQWSNVVRWEFKYPTPFLRTREFLWQEGHTAHATFEDADATVMEALELYRGVYEDLLAVPVVPGYKTEKEKFAGGFRTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFEISFQNEKGESQIPWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQVVIVPIISKKLTPE 279
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: K0SBF7_THAOC (Proline--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SBF7_THAOC)

HSP 1 Score: 344 bits (883), Expect = 3.740e-114
Identity = 163/205 (79.51%), Postives = 179/205 (87.32%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTK 615
            +SGE DL  PIA+RPTSETIMYPAFS WIRSHRDLPLKLNQWSNVVR  FK+PTPFLRTREFLWQEGHTAHASF +A+ MV +ALDLYRRVYEELLA+PV+ G KTE EKFAGGH TTTVEAYI  +GRAIQGATSHHLGQNFGKMF I Y+D+KGE    WQTSWGLTTRT+GV +M HGDD GLVLPPRVAPLQ VI+P+ +K
Sbjct:  115 KSGEDDLAAPIAIRPTSETIMYPAFSDWIRSHRDLPLKLNQWSNVVRWEFKDPTPFLRTREFLWQEGHTAHASFDDANVMVRKALDLYRRVYEELLAIPVVPGYKTEKEKFAGGHSTTTVEAYIPVSGRAIQGATSHHLGQNFGKMFDINYQDEKGETQTAWQTSWGLTTRTIGVMIMVHGDDTGLVLPPRVAPLQCVIVPITSK 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: B8LCI1_THAPS (Proline--tRNA ligase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCI1_THAPS)

HSP 1 Score: 343 bits (879), Expect = 1.380e-113
Identity = 164/205 (80.00%), Postives = 182/205 (88.78%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTK 615
            +SG+ +L +PIAVRPTSETIMYPAF+ WIRSHRDLPLKLNQWSNVVR  FK+PTPFLRTREFLWQEGHTAHAS+ +AD MVMQALDLYRRVYEELLA+PVI G KTE EKFAGGH+TTTVEAYI  +GRAIQGATSH+L QNFGKMF I Y+D+KGE  I WQTSWGLTTRT+GV +M HGDD GLVLPP VAP QAVIIP+V+K
Sbjct:  121 RSGDGELAQPIAVRPTSETIMYPAFADWIRSHRDLPLKLNQWSNVVRWEFKDPTPFLRTREFLWQEGHTAHASYEDADVMVMQALDLYRRVYEELLAIPVIPGYKTEKEKFAGGHQTTTVEAYIPVSGRAIQGATSHNLWQNFGKMFDINYQDEKGETKIAWQTSWGLTTRTIGVMIMVHGDDTGLVLPPMVAPQQAVIIPIVSK 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A1E7F2C5_9STRA (Proline--tRNA ligase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2C5_9STRA)

HSP 1 Score: 340 bits (871), Expect = 8.790e-113
Identity = 159/210 (75.71%), Postives = 187/210 (89.05%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKKVRNE 630
            +SG++DL+E IA+RPTSETIMYPAFS WI+SHRDLPLKLNQWSNVVR  FK+PTPFLR+REFLWQEGHTAHA+F EAD MVM ALDLY++VY++LL VPVI G KT  EKFAGGH+TTTVEAYI   GRAIQGATSH+LGQNFGKMF I+++D+KGE  I WQTSWGLTTRT+GV VM HGDD+GLV+PPRV+PLQAVI+P+++KK+  E
Sbjct:   81 KSGDTDLKEQIAIRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHATFEEADSMVMAALDLYKKVYQDLLCVPVIPGYKTNKEKFAGGHQTTTVEAYIPMNGRAIQGATSHNLGQNFGKMFDIKFQDEKGESKIVWQTSWGLTTRTIGVMVMVHGDDKGLVMPPRVSPLQAVIVPILSKKLTME 290
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A7S4HM09_9STRA (Proline--tRNA ligase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM09_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.120e-112
Identity = 162/206 (78.64%), Postives = 183/206 (88.83%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKK 618
            +SGE+DL + IA+RPTSETIMYPAFS WI+SHRDLPLKLNQWSNVVR  FK PTPFLR+REFLWQEGHTAH S+ +A  MV QALDLYR VY+ELLAVPV+ G KTE EKFAGGH+TTTVEAYI+G+GRAIQGATSH+LGQNFGKMF I ++D+KGE  I WQTSWGLTTRT+GV VM HGDD GLVLPPRVAPLQAVI+P+V+KK
Sbjct:  136 KSGETDLAKQIAIRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKYPTPFLRSREFLWQEGHTAHVSYDDAQVMVRQALDLYRDVYQELLAVPVVPGYKTEKEKFAGGHQTTTVEAYIAGSGRAIQGATSHNLGQNFGKMFDISFQDEKGETQIAWQTSWGLTTRTIGVMVMVHGDDTGLVLPPRVAPLQAVIVPIVSKK 341
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A6T8LU20_9STRA (Proline--tRNA ligase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8LU20_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.450e-112
Identity = 162/210 (77.14%), Postives = 186/210 (88.57%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTKKVRNE 630
            +SG+ DL  PIAVRPTSETIMYPAFS WI+SHRDLPLKLNQWSNVVR  FK+PTPFLR+REFLWQEGHTAHA+F EA+EMVMQALDLYRRVYEELLAVPVI G KTE EKFAGG +TTTVEAYI  +GRAIQGATSHHLGQNFGKMF+I+++++ G+  I WQTSWGLTTRT+GV VM HGDD GLVLPP +APLQ VI+P+++K + +E
Sbjct:  147 KSGDGDLAMPIAVRPTSETIMYPAFSDWIKSHRDLPLKLNQWSNVVRWEFKDPTPFLRSREFLWQEGHTAHATFDEANEMVMQALDLYRRVYEELLAVPVIPGYKTEKEKFAGGDRTTTVEAYIPQSGRAIQGATSHHLGQNFGKMFEIKFQNEAGKSEIAWQTSWGLTTRTIGVMVMVHGDDVGLVLPPAIAPLQCVIVPIISKHLTDE 356
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A7S0T0X0_9STRA (Proline--tRNA ligase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0X0_9STRA)

HSP 1 Score: 335 bits (858), Expect = 6.580e-112
Identity = 155/205 (75.61%), Postives = 181/205 (88.29%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTK 615
            +SG+SDL EPIA+RPTSETIMYP FS+WIRSHRDLPL++NQW NVVR  FK+ TPFLR+REFLWQEGHTAHAS+ EA   V+  L+LY++VYE+LLAVPVI G KTE EKFAGGH TTTVEAYI+G+GRAIQGATSH+LG  FGKMFKI YED+KGE AIPWQTSWGLTTRT+GV VM HGD++GLVLPPR+AP+Q +I+P+V K
Sbjct:    4 KSGQSDLAEPIAIRPTSETIMYPFFSKWIRSHRDLPLEINQWCNVVRWEFKDATPFLRSREFLWQEGHTAHASYEEAQARVLSILELYKQVYEDLLAVPVIKGMKTEMEKFAGGHHTTTVEAYINGSGRAIQGATSHNLGLGFGKMFKIYYEDEKGERAIPWQTSWGLTTRTIGVAVMVHGDNKGLVLPPRIAPIQVIILPIVLK 208
[Close]
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Match: A0A1Z5KNG0_FISSO (Proline--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNG0_FISSO)

HSP 1 Score: 345 bits (885), Expect = 5.450e-110
Identity = 162/205 (79.02%), Postives = 184/205 (89.76%), Query Frame = 1 
Query:    1 QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVFKNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPVIMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQYEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVIIPVVTK 615
            +SG+ DLE PIA+RPTSETIMYPA+S WIRSHRDLPLKLNQW+NVVR  FK PTPFLRTREFLWQEGHTAHA+F +A++MVM AL+LYR+VYE+LLAVPVI G KTEAEKFAGG++TTTVEAYI+G+GRAIQGATSHHLGQNFGKMF I ++DDKGE    WQTSWGLTTRTLGV VM HGDD GLVLPPRVAPLQ VI+ +++K
Sbjct:  531 KSGDGDLENPIAIRPTSETIMYPAYSDWIRSHRDLPLKLNQWANVVRWEFKYPTPFLRTREFLWQEGHTAHATFEDAEKMVMDALELYRQVYEDLLAVPVIPGYKTEAEKFAGGYRTTTVEAYIAGSGRAIQGATSHHLGQNFGKMFDITFQDDKGETQTAWQTSWGLTTRTLGVMVMVHGDDTGLVLPPRVAPLQVVIVAIISK 735
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12399.4898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNW5_ECTSI6.960e-13492.86Proline--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YT63_9STRA2.880e-11582.52Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
B7GC21_PHATC1.370e-11477.14Proline--tRNA ligase n=2 Tax=Phaeodactylum tricorn... [more]
K0SBF7_THAOC3.740e-11479.51Proline--tRNA ligase n=1 Tax=Thalassiosira oceanic... [more]
B8LCI1_THAPS1.380e-11380.00Proline--tRNA ligase (Fragment) n=1 Tax=Thalassios... [more]
A0A1E7F2C5_9STRA8.790e-11375.71Proline--tRNA ligase n=1 Tax=Fragilariopsis cylind... [more]
A0A7S4HM09_9STRA1.120e-11278.64Proline--tRNA ligase n=1 Tax=Odontella aurita TaxI... [more]
A0A6T8LU20_9STRA1.450e-11277.14Proline--tRNA ligase n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0T0X0_9STRA6.580e-11275.61Proline--tRNA ligase n=1 Tax=Chromulina nebulosa T... [more]
A0A1Z5KNG0_FISSO5.450e-11079.02Proline--tRNA ligase n=2 Tax=Fistulifera solaris T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12399contigM-pyrifera_M_contig12399:842..8960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.1
Seed ortholog evalue4.9e-111
Seed eggNOG ortholog2880.D8LNW5
KEGG rclassRC00004,RC00049,RC00055,RC00069,RC00296,RC00523,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K01120,ko:K01194,ko:K01874,ko:K01881,ko:K15437,ko:K22119
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR00010,R00191,R01234,R03522,R03659,R03661,R04773,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00230,ko00450,ko00480,ko00500,ko00970,ko00980,ko00982,ko00983,ko01100,ko01524,ko05200,ko05204,ko05225,ko05418,map00230,map00450,map00480,map00500,map00970,map00980,map00982,map00983,map01100,map01524,map05200,map05204,map05225,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,COG0625@1,KOG0867@2759,KOG4163@2759
EC2.5.1.18,3.1.4.17,3.2.1.28,6.1.1.10,6.1.1.15
COG Functional cat.J
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00537,ko01000,ko01007,ko02000,ko03016
Exons5
Model size636
Cds size636
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12399.4898.1prot_M-pyrifera_M_contig12399.4898.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12399 842..8960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.0329313-CDS-M-pyrifera_M_contig12399:841..9881622815758.0329313-CDS-M-pyrifera_M_contig12399:841..988Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 842..988 +
1692277555.4876466-CDS-M-pyrifera_M_contig12399:841..9881692277555.4876466-CDS-M-pyrifera_M_contig12399:841..988Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 842..988 +
1622815758.046275-CDS-M-pyrifera_M_contig12399:1867..20271622815758.046275-CDS-M-pyrifera_M_contig12399:1867..2027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 1868..2027 +
1692277555.5036578-CDS-M-pyrifera_M_contig12399:1867..20271692277555.5036578-CDS-M-pyrifera_M_contig12399:1867..2027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 1868..2027 +
1622815758.0593488-CDS-M-pyrifera_M_contig12399:5543..56791622815758.0593488-CDS-M-pyrifera_M_contig12399:5543..5679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 5544..5679 +
1692277555.5118477-CDS-M-pyrifera_M_contig12399:5543..56791692277555.5118477-CDS-M-pyrifera_M_contig12399:5543..5679Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 5544..5679 +
1622815758.0704114-CDS-M-pyrifera_M_contig12399:7622..76911622815758.0704114-CDS-M-pyrifera_M_contig12399:7622..7691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 7623..7691 +
1692277555.5203621-CDS-M-pyrifera_M_contig12399:7622..76911692277555.5203621-CDS-M-pyrifera_M_contig12399:7622..7691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 7623..7691 +
1622815758.0848339-CDS-M-pyrifera_M_contig12399:8836..89601622815758.0848339-CDS-M-pyrifera_M_contig12399:8836..8960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 8837..8960 +
1692277555.5290878-CDS-M-pyrifera_M_contig12399:8836..89601692277555.5290878-CDS-M-pyrifera_M_contig12399:8836..8960Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12399 8837..8960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12399.4898.1

>prot_M-pyrifera_M_contig12399.4898.1 ID=prot_M-pyrifera_M_contig12399.4898.1|Name=mRNA_M-pyrifera_M_contig12399.4898.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=212bp
QSGESDLEEPIAVRPTSETIMYPAFSRWIRSHRDLPLKLNQWSNVVRQVF
KNPTPFLRTREFLWQEGHTAHASFAEADEMVMQALDLYRRVYEELLAVPV
IMGTKTEAEKFAGGHKTTTVEAYISGTGRAIQGATSHHLGQNFGKMFKIQ
YEDDKGELAIPWQTSWGLTTRTLGVCVMCHGDDQGLVLPPRVAPLQAVII
PVVTKKVRNEA*
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mRNA from alignment at M-pyrifera_M_contig12399:842..8960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12399.4898.1 ID=mRNA_M-pyrifera_M_contig12399.4898.1|Name=mRNA_M-pyrifera_M_contig12399.4898.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8119bp|location=Sequence derived from alignment at M-pyrifera_M_contig12399:842..8960+ (Macrocystis pyrifera P11B4 male)
CAGAGCGGAGAGAGCGATCTCGAGGAACCGATCGCCGTTCGTCCCACGTC
GGAGACTATCATGTACCCAGCGTTCTCGAGGTGGATTAGGAGTCACCGGG
ATCTGCCCCTCAAGCTCAACCAGTGGAGCAATGTCGTCAGGCAAGTAGTA
TTGCTCATGGGCTTGAGAATACTCGTTGATATTGTCGATCATATTGTTGG
CATATGATACAGTGTGTTGGTGCTGGGGGAGCGGGGGGTAGTCATGTCAT
GCGAGGGGGTGGGGGAGGGGGGTTGCTCATTCTCATGCATGGCCGTAGTC
GTGTGACCATGGACCCTCGCATCCCTACAATGCCGGGACGGAGCACGTCG
GGTTTTCAGCGACCAGGCAAACGTTGCTTGCACCAAGCGCGAAAAAGCGC
GGTGAGGTGTTGGGCGAGTCGCATGAAGGGTAAGCTGCGTCTACCAAGCG
CGAGAAAGCGCCGTTGGGTGTTGGGGGAGTCGCATGGAGGGTGAGCTGCG
TCCTACTAAGAACCGCTTTAGAGGGGAATTTTATCGCATATGGATGACAG
CATGAATTAATTGATTTAAGTTCTGGTGTGGCCACTTTGGGGGGTGGGGG
GGGCGTACTCATTTGTTGCTTGCCATAGTCATTTGACCATTGACCACGTA
TCCCTTTCGAGACGGAGCACCGTTCCTACTCCTAATAGAGACACCTCCAA
CAATTGGGCGCTCATTACGTTGTTTCCGTGTGGGAGGGAGGGGGGGTGCT
GGCGCTGTTGATATTCGTATTGCTGTTGCCGCTGTTGCTATTACGAGGGA
CCATAGTAAATAGGACCTACGGTACACACAAAAAACCTTTGTATTTACCT
ATTCTTACTCACGATATTTGGTCCTATTTACTATGGCCCCCCCGTAATAG
TGCTGGTGGTATTGTTGTCATCGCTGTTTTGTGTCTTTTTTTCCTTGTCG
CTGTCGCTGCTTGCCTTTTGTCTGTATTTTTTTACGCACACGTTTGCACG
TGACTGCCTACGTCCGCAGGTGGGAGTTCAAGAACCCCACGCCGTTCCTG
CGCACTCGGGAGTTCCTTTGGCAGGAGGGGCACACCGCACACGCCAGCTT
CGCGGAGGCCGATGAGATGGTGATGCAGGCACTCGACCTCTACCGAAGGG
TCTACGAGGAGCTGCTTGCCGTCCCCGTCATCATGGGTGAGACCAGAAAG
AGGCCGTAGGGAAGGGGGGCGGTGGGGGGTGGGGGACATGTTTTATACTG
GTATCGTTTTGTCTGGAATGTAGGGACCATTGGGGTATAAATATTAAGTG
CAAACGGTTATTGAATTTCCGGACAGAGCGGTACGAAGGAAGCAAGTTGC
TTGTTCACACGACCGCGTAAAGTACAGGGCATGCCTCACTCGCACGTTTT
GAGATGTGCGAAGCCAGAGGGAGATGCGCGCAAGTCCGACCTAAATTCTC
CGTTTCGTTTTTCTTGTTTTGTCCGGGTTTTATCGCGGAGGACCATACTA
AATGGGACCAAATATTGTTGGTAAAAATAGGTAAATATATAGGTTTTTAT
GTATACCATAGATCCTACTAACTATGGACCCCCGTAGTAGTGTCACGTAT
GCCTCTCCTTCCGCCAGCGCACACAGCCGTGTTTAAGGACAGCAGTTTTA
TTGTCCACCAGTGGTGCGAGTTGACCTCTCTGGGACTTGACTATCGCGAG
TTCCTACGAAGTATATAAGTGACCCCCAGCCCATGGAAGCTTCCTGAGAG
TTAACCCACCCCAAGAACACTTAGGCTTGAAAAAAATAGCGGGATTTTTG
CCACTTTTTTATGCCACACAACCTTAGGAAGATGAATTTGGTGAATTCGG
GGTCATCGCATGTAGGAAGCAGACCACAAGGAACCCAACCAAGACGTGGT
TTCATTCAGCCAAATTCCTCGCGAGCACCCTATTAGTAGGCATAGAGGCG
AAAAACGCCGAAATGTTGCGACGAGCAGAGCGCGTCATCGGCCACAATAC
CGACCGCACGAAGCCCAACCACATTGGTTTCATTCCACCAAATTCTTTCT
CAAGCACGCTAATATTACGGGGGTCCATAGTTAATAGGACCTATGGTATA
CATAAAAACCTATATATTTACCTAATAGGACCTATGGTATACATAAAAAC
CTATATATTTACCTATTTTTACTAACAAAATTTGGTCCCGTTAACTGTGG
ACCCCCGTAATAGTATCAGTATTACCCAAAAATACTCCCTTTTTGGCTTT
GGTATACCAGCTTGTATTGCGGGGGGGCCATATTAAACAGGACCTACGGT
ACACACGAAAACCTTTAAATTTTAGTTATTTTTACTTACGATATTTGGTC
CTATTTACTATGGTCCCCCGTAATAATAACCGAACAACAATACTGGCGGT
AGAACAACCAATCATGAACAAATAGGCGATCGTCACTGGTATGTGAAGAG
CCAGGGAGGGTGTACGTTTGGTCCGATTAAATGACAGTTACGTAGCACCG
GTTGGTACAATTGCCTGTTGTGGACGATGTTGACTCTTGACATCTGAGGT
TGTAGATGGTGACGCACGAGGCTCACTTCTCCTCTGCCCCTACCCTGTGG
GAGGCCAATAATTCACGACCCAGAACATCCATCGATAGACTGCTTGCTGC
CATGCGGTCTGGGCTACCGCTGCCTAAGGCTACGAACGCCCACGATCTCC
GACCGTGGTTGTGTTGCTGCACGCCATTCCTGGTCGCTTGATGAAGATCG
GAACACTCACTCGTGCTCGATTTGGTCGCTATGCGAGTAGACGATCATGT
TTGAAGGCGTCAATACAGCTTGATTGAGTCACTATGTAGACCATCAAGTT
CGAAAGAGGTCAATACAGCAGTAGCGAGAGACTCACACTACGTATAATAA
CGCTCTATCTTTTCAGACTTGGGCGTGCGGGGGCGCGGGTTTCATTTAAA
TTCGTCCAAAACTTGCAGCTGCCAGCTGTGCGTTCGTTCGGCCAGGGCAA
AAAGCGGGTTTTTGAAAGAAACGCAAGAAAAAAACGAGTTAACAAAAGGT
TTCTGCTTCTTCACCGCCTTCCCGTTGTCGTCGTCGACGAGACAAAATGC
TTGGAGTTTTGACCTGGGGGAAAAAAAAAATCGGAGTTGTATTCGTACGC
ACGAAGTAAAAGGGTTTGAAGATTCGCCGACTCGAAAAAGGAGAGGACCT
GTTTTTTAGTGTGACCGACGGAAAAACTCATCATGGTTCATCCCTACCGA
CGTGGAAACCACCCTGGCCGGGAATAGACATTACCCGCTTCGACTCACAT
GTGGTAATCAGGACTCACCATGGACCGAAAACCAGGTATTCCTGGTTGTG
ATGTGTTCACCAACCATAAATTGGTTCTAATCACTATATTACGGGGGACC
CTAGTAAATAGGACCAAAATATTGTTGGTAAAATTAGCGAAATATGCAGG
TTTTTGTGTGTGCGGTGGGTCCTATTTACTATGGCCCCCCGTAGTAGTAA
TCAAGACCAATTGTATACACAGAAATCTATATATACCAGTATTTTTACGA
AGCATATTTGGTCCTGGTAACTATGTTCCCCGGTAACAGATCATATCTAT
TTGACCGCTATAGTTAACGTTCCACACGTGAAAATAGTGGGCTATCTCCT
AACGTACTGTGCGCAACGTTTCATGGGGACAGACTAGTCGAAATTTGCGT
GGAATTCGTAGCTATTACGATACCTTAGACCTATGCCAATGGAAACGCGA
AGTCGAAGTTTTCTTTAAAAAAAAAATCTTTGAAAAAACAGCCGAAAATA
TCCTCGTGTACCGCCGCTGTGGGAAAAAAAATGTTTGATTTTGTCTTCTT
TTTTTTGCTAACGGCTGCAGGCGGCGGAATTTGTTTTCTCTCGTTGTAAA
TTGTCAACACGCTGATAAAAATCAGCTCGTGCGACGATAGACGCTCGATC
TCGATATAGACTCAGCCCACGCCCAACCCGCCTGGTGTCGGGCAAGGCCA
ACGAGTATAGATCACGGCATCGAAGACAGAAAGTGGATACCTGCTCTAGG
GGGCGAGAGCTTGCCGGCGGCGTCCTACGGTATCCTCCCAAACCTGAAAA
AAAGCCTGTTTTTTGCCATTCGAGACGGATCGAGAAATTTTGTCTTCTAT
TTTGTACACATCAGCGGCTAATTGCTTTTTTATCGTACGCCTGGCCAGCG
CCCGCCACATGTCACTGGCCATAGTGTGAACACGGTGACCCTAGAGTGGG
TCGGATCCCCTAACGAGCGCACTCCGTTCAGAAGTCATGACGCAGTCGTT
GGTTTTGTCGATCGATGTCTGTCGCGGACTCGGAATCTCGCCGCTTTGAA
CCAAACATCGCCTGAGTTTTTCTGAAGCCGATCTTGGCCCAACATCGGCC
CCTCAGACTTTTGCTTTTTTTGGGGTTTTCCAAAAGTTTGGAACTTTTTT
TCTTTCTAAACGTGCCCATAGGAAGCGCGTTCTATTTTTTTTTGGCGGGT
ATCTTTGGAATCCAAACTTTTTATGGGAACTTTGCGTTTCCATGGGCATA
GGTCTAAAGGGCCAATATCTGAAACAAGACAGCAGGAGATGAAGACATAT
TGACTAATAGCTGGGTGTTTTTTCGTACGACTTTTTTTTTTTTCAACTGG
GTGTTTTTTCGTACGACGTTTTTTGTTGTCAATGTTTCCCGTGTCGCGAA
AGGCACGAAAACGGAGGCCGAAAAGTTCGCGGGAGGCCATAAGACGACAA
CCGTGGAGGCGTACATCTCGGGGACAGGGCGGGCCATCCAGGGGGCCACA
AGCCACCATCTCGGGCAAAACTTCGGCAAGATGTTCAAGTGAGATATAAA
TTGTTTATTTTCTACTTACACGTACAATACCAGTACGAGTACGAGGTTCC
ATCCTGAAAATGCCTTTCGAGCTGACTGAAGCCGATTCTACGAGCGTCGG
CGAACGTCCATCTACAACTACGTACCGTTTGGATTGATTTTTTATACACG
AAAGATCGTTGCGCTTTGATGTTTTTGGAGATAGTGGTGCAGTATACGTC
GCGCCTTGTGCGGAGAAATTAGGGACCCACACCTGTCGAGCTGGCTCAAG
CCGATTCTTCGACCGCCGCCGATCGAGATTAACCTATTATACTATGCCTG
GTAAAAATTACACCGCTGACTGACTATGTGTAGTAGTCTTACAAGTAAGT
CAACTATTAAAAACTGACTTAGAGCTTCGTTGGGTGTGGCGATGTAAGTC
AACGATTAATAGCTGGCATGGGCTTAGTTGGGCGCTGACCGCTGACCTAG
TTGTTGGTTGGGCGGCGAAGTAAGCCAACAGGCTGGCTTGGACATTAGTT
AGGCGCTGCTTTAATCTTGCTTGGGTAGCGAAGTGAGCCAACTATTTACG
GGGGTCCATAGTTGACAGGACCAAATATTGTTAGTAAAAATACCTAAATA
TATAGGTTTTTATGTATGCCACAGGTCCTGTTAACTATGTACCCCCGTTA
TAACAGACTTGGACTTGGCTAGGCTCTAGCTTAGTCTTCTTGGGGTGACG
AAGTTGGCCAACTGAATGACTTGGACTTAGCTGGGCGGCGAAGTAAGTCA
ACTACTGTAACTGGCTTAGACTTACTTGGGTGGTGAAAGAAGCTAACTAA
CTGACTTAGCGTTTGTCGACAAGAAGCACCACGTCGAGCCACAAATGCAC
CAGGCAAAGACAAATACGCAGAACTCCGCAAGCTACCGCACGCAACTAGC
TGTAGTACCTAACCAACTAATTTATAATCGGCGACTTGTAGTCAGCCAAC
TCATAGCCCTATAGTACCAATCATGCGATCTACCTAGCCAACTAATTCTA
GTCGGCGACTTTATAGTCAGCCAACTCACAGATCTATACTACTAATGATA
GGATGGCTTATGCTCAGCCAACTCACAGCTCTATAATATTATTCATGGTA
TCTACCTAGCCAACTAATATTTAGTCGGCGACTAACAGTCAGACAACTCA
CAGCAGCCCTGCACACTAATAATGGCATCTACCTAGCCAACTATTATTTA
GTCGGCGATTCATAGTCAGCCAACTTGCAGCCTTACACACTAATGATGGT
ATCTACTTCACCAACTTTTTATCGGCGACTACCACTCAGCGAACTCACAG
CTCTATAATACTAATTAATCAGGGCAGCTACCTAGCCAACTAGTTTCTAG
TCGGTGACTTATATTCTGCCAACTCACAGCTCTTATGATAATTATCTTGC
CATCTACCTAGCCAACTAAGTTCTAGGTTGGTGGCTTACAGTCCGCCAAC
TCACAGCCCCATAGCGCTAATCATGGCATCTACCTATCCAACTATTTTGT
TGGTGGTGGCTTGTAGTCCGCCAACGCACAGCCCTATAATACTAATCATG
GCGTCTTCCTCTCTAGTTAAATTGACACACGACTTCCTCTCTAGTTAAAT
TGACACACGACACGAAATTGGAACGTGGAAGTGTGGTGAGCTTAAGCTTT
ATTTTTACCAATCCGCCGGTGGATTGAAAAAAAAAAGAGGTTAACTACCA
GGTAATATCTAGTCGGCGACTTGATATTAATAGTAAGCCAACTCACAGCC
CTGTAATAGTAACCATGGCATCCATCTAGCCAATTGAATTCTAGTCGGCT
ACCTTACGGTCAGCCAACTCCCAGCCCTATCTGGTGTATTTGACAACCTT
CTGACGATTTCTTTCCTTCTATGTCGCTTTGGCGCATTTTTTTGCTCGCT
CTTCTTGCTCGCCGTGTTTCACTGTTTGCAGGATTCAGTACGAAGACGAC
AAGGGAGAGCTGGCCATCCCGTGGCAGACGAGCTGGGGTCTCACCACCAG
GTGAAGAGGCGTTATTGTTTCCGTTACGTTGGGGGTCACGGTTTATTGAG
CTACGTGGTACCAGGTATCGATTTTTAAGAGCTGTCGGATTTGAGGGAGA
TACCCGGGGAGTTTCACCACTCATTCGAAACTATGGTTGAGGACCACTCT
GTACGGTACGAATAAAAGTTACAGTAGGCCCAACTCGAACCAAATCAACC
AATGCATGGGGTTGGCCATCTGGTTGGCCATCTTCGTCTCGTAAGCAGTG
TTCGTCAACCATCGTGTGGAATAACTGGTCAACTCTACCATAATAACAAG
TGCTGGCTTAAGAGAAGTACAATGGCTTGGCACGGGCATACTCAAAACTT
TCCCTGTTACCTAGTATATATTTATATTGTCAATTCCGTTTCAGGAGAAG
TTGGGGTTCAGGAGAGGTTACACTTGAACAGGCCTCGCACATACCCCCCT
CTCTTGAACCGTGACCCCCACTGGAATGCGATTGCGCCGCAGTTACCTAC
TCTTGCCGTTACTGCCGTTACACACTGCGGTTGCGCCGCATCTATCATAA
CTTCGTGTGCGACCCTAACGTGACGATTTTTTGTTTTTGGTCTTGTTTTT
TTTTTCGTAGAGCTGTGAGTCGTCAAGATTTCACGACAAATAACAATTAA
CTGATGAGTAGATGGCGTCAGCTCACTATTACGGGGGTCCATAGTTAATA
GGACCTACTGCATACATTAAAACTTATATATTTACTTATATTTAACAACA
ATATTTGGTCCTAGTTACTATGGTCCCCCGTAATACCAGGTATTATTAAT
AGTAACTGGTTTTAGTCGGCAAGTCGGCTGGCGAAGCGAGCCAACTCAGC
CCCCCCCCCCCCACCGGCAAAAAAGGGGGCCCTGCCGAAAAAAACAAAGT
GTATCCCGTATTCAACAATCCTTCCTACAAGTATGGAAACCCCAATAGAC
GGATGGTCGGCACCTCCGGGAACCGACTAACTGCTGTTCCGACTAGTAAT
AATAGTGGTGACGACAATCTATTGTTCCAATTGGTTAGTGACTTTGAAAT
CGGGCCGACTCTTAAGCGCCCCACTTTCTTTTTCGTCGGTCGGTCGGTCG
GTCGGTCGGTCGATCGGTCATTTTTTTATATTTTTTTTTTGTCAGGACTC
TGGGTGTTTGCGTAATGTGCCACGGGGATGACCAGGGTCTGGTGCTGCCG
CCGAGAGTCGCCCCGCTTCAGGCGGTCATCATTCCTGTCGTCACCAAGAA
GGTACGTAATGAGGCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12399:842..8960+

>mRNA_M-pyrifera_M_contig12399.4898.1 ID=mRNA_M-pyrifera_M_contig12399.4898.1|Name=mRNA_M-pyrifera_M_contig12399.4898.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1272bp|location=Sequence derived from alignment at M-pyrifera_M_contig12399:842..8960+ (Macrocystis pyrifera P11B4 male)
CAGAGCGGAGAGAGCGATCTCGAGGAACCGATCGCCGTTCGTCCCACGTC
GGAGACTATCATGTACCCAGCGTTCTCGAGGTGGATTAGGAGTCACCGGG
ATCTGCCCCTCAAGCTCAACCAGTGGAGCAATGTCGTCAGGCAAGTACAG
AGCGGAGAGAGCGATCTCGAGGAACCGATCGCCGTTCGTCCCACGTCGGA
GACTATCATGTACCCAGCGTTCTCGAGGTGGATTAGGAGTCACCGGGATC
TGCCCCTCAAGCTCAACCAGTGGAGCAATGTCGTCAGGCAAGTATTCAAG
AACCCCACGCCGTTCCTGCGCACTCGGGAGTTCCTTTGGCAGGAGGGGCA
CACCGCACACGCCAGCTTCGCGGAGGCCGATGAGATGGTGATGCAGGCAC
TCGACCTCTACCGAAGGGTCTACGAGGAGCTGCTTGCCGTCCCCGTCATC
ATGGTTCAAGAACCCCACGCCGTTCCTGCGCACTCGGGAGTTCCTTTGGC
AGGAGGGGCACACCGCACACGCCAGCTTCGCGGAGGCCGATGAGATGGTG
ATGCAGGCACTCGACCTCTACCGAAGGGTCTACGAGGAGCTGCTTGCCGT
CCCCGTCATCATGGGCACGAAAACGGAGGCCGAAAAGTTCGCGGGAGGCC
ATAAGACGACAACCGTGGAGGCGTACATCTCGGGGACAGGGCGGGCCATC
CAGGGGGCCACAAGCCACCATCTCGGGCAAAACTTCGGCAAGATGTTCAA
GCACGAAAACGGAGGCCGAAAAGTTCGCGGGAGGCCATAAGACGACAACC
GTGGAGGCGTACATCTCGGGGACAGGGCGGGCCATCCAGGGGGCCACAAG
CCACCATCTCGGGCAAAACTTCGGCAAGATGTTCAAGATTCAGTACGAAG
ACGACAAGGGAGAGCTGGCCATCCCGTGGCAGACGAGCTGGGGTCTCACC
ACCAGGATTCAGTACGAAGACGACAAGGGAGAGCTGGCCATCCCGTGGCA
GACGAGCTGGGGTCTCACCACCAGGACTCTGGGTGTTTGCGTAATGTGCC
ACGGGGATGACCAGGGTCTGGTGCTGCCGCCGAGAGTCGCCCCGCTTCAG
GCGGTCATCATTCCTGTCGTCACCAAGAAGGTACGTAATGAGGCGTGAGA
CTCTGGGTGTTTGCGTAATGTGCCACGGGGATGACCAGGGTCTGGTGCTG
CCGCCGAGAGTCGCCCCGCTTCAGGCGGTCATCATTCCTGTCGTCACCAA
GAAGGTACGTAATGAGGCGTGA
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