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Homology
BLAST of mRNA_M-pyrifera_M_contig12395.4889.1 vs. uniprot
Match: D7FJX4_ECTSI (Methyl-accepting transducer domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX4_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.780e-24 Identity = 116/297 (39.06%), Postives = 142/297 (47.81%), Query Frame = 1
Query: 10 DLAEMEAQLSATNEALEEEKEGRRGDVEGLQVALRDERNESDAEKEGLRQTLLMLQQEMGNLNASLSEANQRLEQALSQSGESEQALEDLGHEADSLRERLSAALASDARKGNXXXXXXXXXXQEGSSNVAGGDNIAAVTATTATATTTADLESARATLARDLEAAAFKLQEETAKLRRAEETCSDLERRLSLEQGLSRNKSEELHAEIKALLERVKGAEKGEEEAMKAAATEASRAAGVREDAEGAQTEVAWLRARLAESEEESERATELKGTLEVTRDALDELRVASGQAEATAE 900
+ AEME QLSA EAL EEKEG R DVE A+LSEANQRLEQALS+S ESE+ +LG EA LR+RLS AL A GN +G+ + G A L RDLE AA +LQ+ + L E C++L+ L+ E+ +S EEL +ALL R +GAE+ E++ LR R AE EEE RA ELKGTLE TRDALDELRV++G+AEATAE
Sbjct: 77 EAAEMEEQLSAVTEALHEEKEGHREDVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSEANQRLEQALSRSTESERISAELGLEAQQLRQRLSEALNEAAVAGNKQAPDNASAAGDGTGDGDTGSAXXXXXXXXXXXXXXXXXXXAIDGLKRDLEQAARRLQDNASTLEEQREQCAELQTSLAAERTIS----EELREGSQALLARAEGAERXXXXXXXXXXXXXXXXXXXXXXXXXXXAELSRLRGRAAEWEEEERRAAELKGTLESTRDALDELRVSAGEAEATAE 369
BLAST of mRNA_M-pyrifera_M_contig12395.4889.1 vs. uniprot
Match: A0A6H5L1J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.610e-11 Identity = 90/248 (36.29%), Postives = 117/248 (47.18%), Query Frame = 1
Query: 199 ASLSEANQRLEQALSQSGESEQALEDLGHEADSLRERLSAALASDARKGNXXXXXXXXXXQEGSSNVAGGDNIAAVTAT-----TATATTTADLESARAT---------LARDLEAAAFKLQEETAKLRRAEETCSDLERRLSLEQGLSRNKSEELHAEIKALLERVKGAEKGEEEAMKAAATEASRAAGVREDAEGAQTEVAWLRARLAESEEESERATELKGTLEVTRDALDELRVASGQAEATAE 900
A+L EANQRLEQALS+S ESE+ +LG E LRERLS AL A GN + +S GG +ATA +AD AR L RDLE A+ +LQ+ + L E C++L+ L+ E+ +S +EL +ALL R +GAE+ A E++ LR R AE EE RDALDELRV++G+AEATAE
Sbjct: 246 AALIEANQRLEQALSRSTESERISAELGLEVQQLRERLSEALDEAAVAGNKEAP-------DNASAAVGGXXXXXXXXXDSDTGSATAQDSADDSDARTAPEDAAAIDGLKRDLEQASRRLQDNASTLEEQRERCAELQTSLAAERTIS----QELRQGSQALLARAEGAERXXXXXXXXXXXXXXXXXXXXXXXXXADAELSRLRGRAAEWEEXXXXXXXXXXXXXXXRDALDELRVSAGEAEATAE 482
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1020 |
| Cds size | 999 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815757.5441122-CDS-M-pyrifera_M_contig12395:3725..3879 | 1622815757.5441122-CDS-M-pyrifera_M_contig12395:3725..3879 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 3726..3879 - |
| 1692277555.267752-CDS-M-pyrifera_M_contig12395:3725..3879 | 1692277555.267752-CDS-M-pyrifera_M_contig12395:3725..3879 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 3726..3879 - |
| 1622815757.5545583-CDS-M-pyrifera_M_contig12395:5152..5651 | 1622815757.5545583-CDS-M-pyrifera_M_contig12395:5152..5651 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 5153..5651 - |
| 1692277555.2776392-CDS-M-pyrifera_M_contig12395:5152..5651 | 1692277555.2776392-CDS-M-pyrifera_M_contig12395:5152..5651 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 5153..5651 - |
| 1622815757.57048-CDS-M-pyrifera_M_contig12395:5750..5904 | 1622815757.57048-CDS-M-pyrifera_M_contig12395:5750..5904 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 5751..5904 - |
| 1692277555.2863457-CDS-M-pyrifera_M_contig12395:5750..5904 | 1692277555.2863457-CDS-M-pyrifera_M_contig12395:5750..5904 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 5751..5904 - |
| 1622815757.5814202-CDS-M-pyrifera_M_contig12395:6911..7002 | 1622815757.5814202-CDS-M-pyrifera_M_contig12395:6911..7002 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 6912..7002 - |
| 1692277555.2950728-CDS-M-pyrifera_M_contig12395:6911..7002 | 1692277555.2950728-CDS-M-pyrifera_M_contig12395:6911..7002 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 6912..7002 - |
| 1622815757.5931957-CDS-M-pyrifera_M_contig12395:7583..7684 | 1622815757.5931957-CDS-M-pyrifera_M_contig12395:7583..7684 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 7584..7684 - |
| 1692277555.3061013-CDS-M-pyrifera_M_contig12395:7583..7684 | 1692277555.3061013-CDS-M-pyrifera_M_contig12395:7583..7684 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig12395 7584..7684 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815757.605404-UTR-M-pyrifera_M_contig12395:7684..7705 | 1622815757.605404-UTR-M-pyrifera_M_contig12395:7684..7705 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig12395 7685..7705 - |
| 1692277555.3159878-UTR-M-pyrifera_M_contig12395:7684..7705 | 1692277555.3159878-UTR-M-pyrifera_M_contig12395:7684..7705 | Macrocystis pyrifera P11B4 male | UTR | M-pyrifera_M_contig12395 7685..7705 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12395.4889.1 >prot_M-pyrifera_M_contig12395.4889.1 ID=prot_M-pyrifera_M_contig12395.4889.1|Name=mRNA_M-pyrifera_M_contig12395.4889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=333bp
MEAQLSATNEALEEEKEGRRGDVEGLQVALRDERNESDAEKEGLRQTLLM LQQEMGNLNASLSEANQRLEQALSQSGESEQALEDLGHEADSLRERLSAA LASDARKGNGDGDGDGGGGQEGSSNVAGGDNIAAVTATTATATTTADLES ARATLARDLEAAAFKLQEETAKLRRAEETCSDLERRLSLEQGLSRNKSEE LHAEIKALLERVKGAEKGEEEAMKAAATEASRAAGVREDAEGAQTEVAWL RARLAESEEESERATELKGTLEVTRDALDELRVASGQAEATAERRLKELG VQLDEAISEKDQIEQEARSNSKEAAEQLREVQS back to topmRNA from alignment at M-pyrifera_M_contig12395:3726..7705- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig12395.4889.1 ID=mRNA_M-pyrifera_M_contig12395.4889.1|Name=mRNA_M-pyrifera_M_contig12395.4889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3980bp|location=Sequence derived from alignment at M-pyrifera_M_contig12395:3726..7705- (Macrocystis pyrifera P11B4 male) TCTCAGGACGACCTGGCCGAGATGGAAGCTCAGCTGTCCGCAACCAACGA
GGCTCTTGAAGAGGAGAAGGAGGGACGGAGGGGCGATGTCGAGGGCCTCC
AGGTGGCGCTCAGAGACGAGAGGTCCGTCCCGTACCGCCCGGACTTTGTG
GTAGTCCCGTGGGCGTTCTTGCTTGTGGCTTGTGTTGCTCGAGGCCGTGG
CGCGTTTTAGGCGCGGTGTGAGCACGTGTCGGTTTTTTCGGTGTGGCGGG
CAGATTTGTTGCTTTCGTGTTTTTTTTTTTTTTAATGTATGCTTCGTACG
TACGAGGATGTGTTTTTTTGTATTGACGGGTAGTCGACTTTCTCTTTCTT
ATTTTTCTGTGAGACGTTGTTAGTTTTCGAAAATGCTCGAGCCCGCGCGC
GAGCGCGGGGGGCGTAGACAGCAACGACCACATGAAAATTGAGTTGTCGT
TGCGGGGATAAACCGATGCTATCCACCCGACGGACTAAACGGCAACAACC
TGCGCGAACAACAATTGAGTACAAATAGGAACAACCGCAACGTATACAAC
GCAACCATCATCATTGTGGTCGTCACCATCATCGTTGTCATGATACCGCC
ATCATGGTCAACAACAACGACGACAGCAAACATGGTTGATGGCGTGCTCT
TACGCTTTTGGGACACGGGCCCTAGTCTTACCCCCCGCGCAACGTGTGAC
CAGGAATGAAAGCGACGCCGAGAAGGAAGGGTTGCGGCAGACGTTGCTCA
TGCTGCAGCAGGAAATGGGGAACCTTAATGCCTCCTTGAGCGAGGTGAGA
CCTCAACAGGTGCTGCTGCTGACAGATGCCCGCAAGAGACTGGGCACTGG
TAGAAGTAGTAGTAGTAGCTGCTCGTATTACGGGGGATCATAGTAAATGG
GACCAAATATTGTTGATAAAAATAGGCATCTATAGGTTTTTGTGCACACC
GTAGGTCCTGTTTACTATGGTCCCCTGTATTACTTAGTAGTAGTAGTAGT
AGTAGCCGTAGTAGTAGCAATATATTAGTTGTAGTTGTAGTACAGTAGTG
GTAGTACCAGTAGTAGTAGTACATGTGGTAGCAGTAGAAAAACATAGTTT
TACATCTAGCTGTGGGAGTCTGTCTCGTGCCGCGAACCCCCCCACCCTCC
TCTCCTGTAGTCGAGCCGTATTCGATGCCTCATGCAACTTTCGAGGGAAA
AAAGTTCGTGTTTGCGATTTTATTTTTCTTGCGTTTTTTCGTTTCCGTTG
CAGCAGCTGTACAACCTTTCGCTTCCGCTATGCATCCAACCATACCGTAG
TTGAAAATTAGACGCGTGTCGACGAGGGAAGAAGGGAAGGGCTGAAGTTT
TGTCGTTCGCGACATAACCGAAGGCACGAACCGCGGTGGGGAGGGAGGAG
GAGAGCCTATTGCTGCTGTGTGACCCAGGATTTGAGTTGAGTTACGACTA
ATCCGGGGGGCCATGGTAAATAGAACCTACGGTGTAGACAAAAACCTACA
TATTTACCTCTTTTTACCAACCACATTTGGCACTGTTTACTATGGCCCCC
CGTATTATTATAGTAATATGAGGGAGACAGAGAATAAGAGCGAATATAGT
AGGTCGGAAGAGAAAAACAATAAACGAATAAGGTGTCCCAGAAACGTGTG
TGCAGTTGTAGCAATTAACTGTTGATGAAACTGGAACTGCGTAAATCTCT
CTCGGTAGCTGTAACTGTCACAGCCCCACCAGCACCTCCACCACCCACAC
CCACACCCCCACCCCCCACGCCTCCCGGGTCACCAACGAGAACCGCTCCA
GGCGAACCAGCGTCTGGAGCAGGCGCTGTCACAGAGCGGCGAGAGCGAGC
AAGCTTTGGAAGACCTCGGCCACGAAGCAGACAGCCTTCGCGAGCGTCTG
TCTGCTGCCCTCGCCAGCGACGCGCGTAAGGGCAATGGTGATGGTGATGG
CGATGGTGAGGATAGCGGAAACGCCGCGGCAGAGCGGGTCCGGGGGGAGG
GGGAGGGACCCGCGGAGAGCGCAAACCAAGACCAACAAGGAAAGGGAGGA
GGAGGAGGAGGTGGTCAAGAAGGATCTAGCAACGTGGCGGGTGGAGACAA
CATCGCGGCTGTCACCGCCACTACCGCTACTGCCACCACCACCGCTGACC
TAGAAAGCGCCCGCGCTACGCTAGCGAGAGACCTTGAAGCCGCTGCATTC
AAGCTGCAGGAGGAGACCGCCAAGCTCCGGCGGGCGGAGGAGACCTGCTC
CGACCTCGAGCGCCGCCTGTCGCTCGAGCAGGGCCTGTCCCGAAACAAAT
CGGAGGAGTTGCACGCTGAAATCAAAGCGCTGCTTGAGCGGGTAAAGGGG
GCGGAAAAGGGCGAGGAGGAGGCCATGAAGGCGGCGGCGACGGAGGCTTC
GAGGGCGGCCGGAGTTAGGGAGGACGCAGAGGGGGCGCAGACCGAGGTAG
CATGGCTCAGGGCCCGGCTGGCGGAGTCGGAGGAGGAATCGGAACGCGCG
ACGGAGCTCAAGGGCACCCTCGAGGTCACTAGGGACGCCCTGGACGAGCT
AAGGTGGGGGGGCGGGGCGGGGATGGGGGTCGGTGGTCGGGAGTGGAATT
TCAGAGTTGGCGCCAAGATAGTGTCGTACTGCTAATGCTAATGTTGGTGG
TAACGTTAGCGGTACAGCAGTAGTGGTCTTGTCCCTCTTTAGTGCAGGTT
GAGTAGTTCCGGTTGCTCACTTCTAGTGCATGTGCAAACCGCTTGACACG
GAGGGAACACTTCCTTTGGCCTTGAGTTGGAGTGGTGCCGGTCGCTGTTT
TTCTAGTGGCGATGTTGGTTGCCTGGTGCATACCAGCACGATCGAGGGAC
CACTACTGCTGTAACGCTATGGTCATAGTTGTCGTTGAAGCTAGCGCTAT
CGCTGACGCTGTCGGTAAGGCTAACGCTGTGTCTAACGCTAGCGCTAACA
CTAGTGCTAACGTTGATGCTAGCGCTAAAGCTAGTGCTATCGCTAGCGTT
AACGCCAAAGCTAACGCTATCGCTAGTGTTAACGCTGACGTTAACGTGCT
AGTCGGCGGGGGAAAGGCGTCGGCACCAAGCGTGCCCCTCCATGATAGCA
AAAAGACTGGTACTTTTGTTTTCCGTAGTGGGTTGGGGAGGGGTAAGGCA
GGGGCGGGGGGGGGGGGGTCTGGTTAAATGTGACCTGATTTGCGGCGTGT
GCTGTGGCGTGAGAGGGACATGTGGTTCAGGAGGATGGACAATTGCGCAC
TGCTCCTGTTCTGACCTGTGTATTCGCCACTGCTGTGATCGCTACGAGAT
ACTGTCGCTGCTGTGATAAGGAAGCAACTGCTATAGGTACTATGATGCAA
TAGAAGCTACTGTGAGCTACTGTATATCATCAATAGAAGCTACTGTGAGC
TACTGTATGTCATCAATAGGAGCTACTGTAAGCTACTGTGTATCATCAAT
GGAAGATACGATCGTGCTGTCATCAGTTAATAGACACTGCTGCAGCTACT
GTGATCAATAGAAAGTACTGCAGTCATTGTGGTCAATGTAAGCTACTGCT
GTGATGTTGTGGCCACTGTAATCAATGTGAGCTGCCGTCGCTACATTGGT
CCGTAGAAGCTACTGCACCTGTATCAGTATATCAATAGCATACACTCCAC
CTACTGCCGTGACCAGAATAAACCACTGCTACGTACAGCTACTGTAATCG
ATAGAGGCGACTACTGTATAGCTACTGCAGTCTTGTGGAATCATTGCTCC
AAAGTCCTCCTACGCTTCTAGCATCATCCTGTATCGCCTGCCTCCTCTCG
CGTTATCGCCGCCTGCACGGCCACAGGGTAGCCTCGGGGCAAGCAGAGGC
CACAGCGGAGCGCCGACTGAAAGAGCTGGGCGTTCAGCTGGACGAGGCGA
TTTCGGAGAAAGATCAAATCGAGCAGGAGGCCCGGTCAAACTCGAAAGAA
GCGGCGGAGCAGCTGCGCGAGGTACAAAGC back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig12395:3726..7705- >mRNA_M-pyrifera_M_contig12395.4889.1 ID=mRNA_M-pyrifera_M_contig12395.4889.1|Name=mRNA_M-pyrifera_M_contig12395.4889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1998bp|location=Sequence derived from alignment at M-pyrifera_M_contig12395:3726..7705- (Macrocystis pyrifera P11B4 male) ATGGAAGCTCAGCTGTCCGCAACCAACGAGGCTCTTGAAGAGGAGAAGGA GGGACGGAGGGGCGATGTCGAGGGCCTCCAGGTGGCGCTCAGAGACGAGA GATGGAAGCTCAGCTGTCCGCAACCAACGAGGCTCTTGAAGAGGAGAAGG AGGGACGGAGGGGCGATGTCGAGGGCCTCCAGGTGGCGCTCAGAGACGAG AGGAATGAAAGCGACGCCGAGAAGGAAGGGTTGCGGCAGACGTTGCTCAT GCTGCAGCAGGAAATGGGGAACCTTAATGCCTCCTTGAGCGAGGAATGAA AGCGACGCCGAGAAGGAAGGGTTGCGGCAGACGTTGCTCATGCTGCAGCA GGAAATGGGGAACCTTAATGCCTCCTTGAGCGAGGCGAACCAGCGTCTGG AGCAGGCGCTGTCACAGAGCGGCGAGAGCGAGCAAGCTTTGGAAGACCTC GGCCACGAAGCAGACAGCCTTCGCGAGCGTCTGTCTGCTGCCCTCGCCAG CGACGCGCGTAAGGGCAATGGTGATGGTGATGGCGATGGCGAACCAGCGT CTGGAGCAGGCGCTGTCACAGAGCGGCGAGAGCGAGCAAGCTTTGGAAGA CCTCGGCCACGAAGCAGACAGCCTTCGCGAGCGTCTGTCTGCTGCCCTCG CCAGCGACGCGCGTAAGGGCAATGGTGATGGTGATGGCGATGGAGGAGGT GGTCAAGAAGGATCTAGCAACGTGGCGGGTGGAGACAACATCGCGGCTGT CACCGCCACTACCGCTACTGCCACCACCACCGCTGACCTAGAAAGCGCCC GCGCTACGCTAGCGAGAGACCTTGAAGCCGCTGCATTCAAGCTGCAGGAG GAGACCGCCAAGCTCCGGCGGGCGGAGGAGACCTGCTCCGACCTCGAGCG CCGCCTGTCGCTCGAGCAGGGCCTGTCCCGAAACAAATCGGAGGAGTTGC ACGCTGAAATCAAAGCGCTGCTTGAGCGGGTAAAGGGGGCGGAAAAGGGC GAGGAGGAGGCCATGAAGGCGGCGGCGACGGAGGCTTCGAGGGCGGCCGG AGTTAGGGAGGACGCAGAGGGGGCGCAGACCGAGGTAGCATGGCTCAGGG CCCGGCTGGCGGAGTCGGAGGAGGAATCGGAACGCGCGACGGAGCTCAAG GGCACCCTCGAGGTCACTAGGGACGCCCTGGACGAGCTAAGGAGGAGGTG GTCAAGAAGGATCTAGCAACGTGGCGGGTGGAGACAACATCGCGGCTGTC ACCGCCACTACCGCTACTGCCACCACCACCGCTGACCTAGAAAGCGCCCG CGCTACGCTAGCGAGAGACCTTGAAGCCGCTGCATTCAAGCTGCAGGAGG AGACCGCCAAGCTCCGGCGGGCGGAGGAGACCTGCTCCGACCTCGAGCGC CGCCTGTCGCTCGAGCAGGGCCTGTCCCGAAACAAATCGGAGGAGTTGCA CGCTGAAATCAAAGCGCTGCTTGAGCGGGTAAAGGGGGCGGAAAAGGGCG AGGAGGAGGCCATGAAGGCGGCGGCGACGGAGGCTTCGAGGGCGGCCGGA GTTAGGGAGGACGCAGAGGGGGCGCAGACCGAGGTAGCATGGCTCAGGGC CCGGCTGGCGGAGTCGGAGGAGGAATCGGAACGCGCGACGGAGCTCAAGG GCACCCTCGAGGTCACTAGGGACGCCCTGGACGAGCTAAGGGTAGCCTCG GGGCAAGCAGAGGCCACAGCGGAGCGCCGACTGAAAGAGCTGGGCGTTCA GCTGGACGAGGCGATTTCGGAGAAAGATCAAATCGAGCAGGAGGCCCGGT CAAACTCGAAAGAAGCGGCGGAGCAGCTGCGCGAGGTACAAAGCGGTAGC CTCGGGGCAAGCAGAGGCCACAGCGGAGCGCCGACTGAAAGAGCTGGGCG TTCAGCTGGACGAGGCGATTTCGGAGAAAGATCAAATCGAGCAGGAGGCC CGGTCAAACTCGAAAGAAGCGGCGGAGCAGCTGCGCGAGGTACAAAGC back to top
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