prot_M-pyrifera_M_contig12388.4886.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig12388.4886.1
Unique Name	prot_M-pyrifera_M_contig12388.4886.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	197

Homology

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BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.980e-79
Identity = 112/197 (56.85%), Postives = 149/197 (75.63%), Query Frame = 0

Query:    1 LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCKRVIVVDSN 197
            +VRPKHAA+SCSH WA AL+V G++  +VG ++ +EW G+GSFWVG +A+ +G +G+Y+T  E SGG ATVF+ LLS  TL A+ VSI LGEG  +L+VR+  GNC + D CP   C +D CVCWEPD ++ CS   S+RYC+ +GGD CSDIKDSE+LLLGS + + IIA  +  S++VAVNTCW+CKR IVV+S+
Sbjct:   20 MVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESS 216

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BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 2.920e-39
Identity = 81/189 (42.86%), Postives = 107/189 (56.61%), Query Frame = 0

Query:    1 LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCK 189
            L RP    V  SH     L+ +G A  +VGA++ ++W   G FWVG MA+ +GVAG  ++  E SGG  T  F   S   LVAAT+S++L +G+ Y  V+ T GNC ++  C    CG   CVCWEPD S  C  G+S R C++Y G  C +I+DSESLL  ST    II      ++LV   TC  CK
Sbjct:   36 LTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCK 224

[Close]

BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Match: A0A6H5KT21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT21_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.380e-21
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 0

Query:   48 MAVGSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVRETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRCSDIK 154
            MA  +GVAG  ++  E SGG  T  F   S   LVAAT+S++L +G+ Y  V  T GNC E+  C    CG   CVCWEPD S  C  G+S R C++Y G  C DI+
Sbjct:    1 MAFAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVHSTEGNCVETSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRKCLQYQGGSCDDIE 107

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig12388.4886.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KV47_9PHAE	1.980e-79	56.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G5U1_ECTSI	2.920e-39	42.86	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KT21_9PHAE	3.380e-21	45.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 40..59
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..34
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 91..158
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 183..197
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 35..39
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..90
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 159..182
None	No IPR available	TMHMM	TMhelix		coord: 40..62
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 160..182
None	No IPR available	TMHMM	TMhelix		coord: 69..91

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig12388	contig	M-pyrifera_M_contig12388:5981..9195 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig12388.4886.1	mRNA_M-pyrifera_M_contig12388.4886.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig12388 5981..9195 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig12388.4886.1 ID=prot_M-pyrifera_M_contig12388.4886.1|Name=mRNA_M-pyrifera_M_contig12388.4886.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
LVRPKHAAVSCSHFWATALMVSGVAGFIVGAVLLSEWGGLGSFWVGLMAV
GSGVAGVYITHNEPSGGTATVFFGLLSFATLVAATVSIMLGEGVAYLVVR
ETGGNCFESDGCPVGSCGDDQCVCWEPDASEACSGGSSLRYCMRYGGDRC
SDIKDSESLLLGSTVTIGIIAVFALCSVLVAVNTCWFCKRVIVVDSN