mRNA_M-pyrifera_M_contig123868.4884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig123868.4884.1
Unique Name	mRNA_M-pyrifera_M_contig123868.4884.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517W8M0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W8M0_9PLAN)

HSP 1 Score: 226 bits (575), Expect = 7.840e-72
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIINE 327
            GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKK+ TEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTG+ CDGENPVKDHSVQELFEKHLKEAECIINE
Sbjct:  227 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKIHTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGKKCDGENPVKDHSVQELFEKHLKEAECIINE 335

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: UPI00118A29B3 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118A29B3)

HSP 1 Score: 226 bits (575), Expect = 7.840e-72
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIINE 327
            GRVE KKMNAVYKQFLALQTKKTSDAEWTRFEKKV TEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGR CDGENPVKDHSVQELFEKHLKEAECIINE
Sbjct:  227 GRVEFKKMNAVYKQFLALQTKKTSDAEWTRFEKKVHTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRKCDGENPVKDHSVQELFEKHLKEAECIINE 335

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517VRR8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VRR8_9PLAN)

HSP 1 Score: 127 bits (320), Expect = 1.380e-33
Identity = 67/108 (62.04%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIIN 324
            G  ELKKM A++KQFL LQ KK  D EW RFEKKV TEID  I+ LE  +  DYPHLQHLLWA RDYLY MLKD RT +N D          Q+ FEKHLK AE IIN
Sbjct:  227 GHKELKKMKAIHKQFLVLQEKKAGDTEWARFEKKVHTEIDSDIRNLEAFSSSDYPHLQHLLWASRDYLYPMLKDARTEKNRD----------QDKFEKHLKAAERIIN 324

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517RP51_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RP51_9PLAN)

HSP 1 Score: 115 bits (288), Expect = 5.670e-28
Identity = 62/109 (56.88%), Postives = 75/109 (68.81%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIINE 327
            GR EL K  AV+++FLALQ K+ SDAEWT FEKK ++++ P+I +LE  A  D PHLQHLLWAGRDYL  ML++ RT  N D          QE FE HLKEAE II+E
Sbjct:  401 GREELAKFKAVHQEFLALQQKQASDAEWTSFEKKAQSDLAPVIAELETSASSDRPHLQHLLWAGRDYLEPMLENARTESNRD----------QEKFETHLKEAERIISE 499

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A518IKY1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IKY1_9PLAN)

HSP 1 Score: 112 bits (280), Expect = 8.200e-27
Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIIN 324
            GR EL+K  AV+++FLALQ K+ SDAEWT F+ K ++E+ PII+ LE  A  D PHLQHLLWAGRDYL  MLK+ RT  N D          QE FE HL EAE II+
Sbjct:  414 GREELEKFQAVHQEFLALQKKQASDAEWTSFQNKTQSELAPIIEGLESNASSDRPHLQHLLWAGRDYLEPMLKNARTESNRD----------QEKFETHLSEAERIIS 511

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A2E7KFL0_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFL0_9PLAN)

HSP 1 Score: 111 bits (278), Expect = 1.510e-26
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIINE 327
            G  EL K  A++++FLALQ K+ SDAEW+ F+ KV++E+DP+IK+LE  AG + P LQ +LWAGRDYL  ML + RT        P  D   QE FEKHLKEAE IINE
Sbjct:  408 GDAELAKFKAIHQEFLALQQKQASDAEWSSFKNKVKSEMDPLIKELESSAGSERPQLQQMLWAGRDYLPGMLDNART-------EPSPD---QEKFEKHLKEAERIINE 506

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A518AFW1_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AFW1_9PLAN)

HSP 1 Score: 108 bits (271), Expect = 1.460e-25
Identity = 59/108 (54.63%), Postives = 72/108 (66.67%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIIN 324
            G+ EL K   ++++FL+LQ KK SDAEW+ F+ KV TE+ P+IK+LE  AG D PHLQ +LWAGRDYL  ML   RT        P  D   QE FEKH+KEAE IIN
Sbjct:  411 GKDELAKFKEIHQEFLSLQQKKASDAEWSSFKNKVTTEMAPLIKELESNAGSDRPHLQQMLWAGRDYLPGMLDTART-------EPSPD---QEKFEKHIKEAERIIN 508

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517VPP5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VPP5_9PLAN)

HSP 1 Score: 107 bits (267), Expect = 4.920e-25
Identity = 55/108 (50.93%), Postives = 69/108 (63.89%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIIN 324
            G  EL+K   VYK+FLALQ K  S++E+  F+ K +TE+ PII++LE  A  D PHLQHLLWAGRDYLY M+ +     N            QE FEKHLKE+E I+N
Sbjct:  399 GHAELEKFQGVYKEFLALQQKNASESEYNSFKNKTKTELTPIIEELETSASSDRPHLQHLLWAGRDYLYPMIDNANKEEN----------RAQEKFEKHLKESERILN 496

[Close]

BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517RP12_9PLAN (Uncharacterized protein n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RP12_9PLAN)

HSP 1 Score: 99.0 bits (245), Expect = 1.470e-24
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 1

Query:    7 VELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIINE 327
            +E K + + +++FL+LQ +  S +EW  F+K   T+IDPIIK LE  A  D+PHLQHLLWA RDYLY ML + +T R+ D          Q  FEKHL+ AE IIN+
Sbjct:   15 MEYKVIQSTHQEFLSLQQEAASASEWDHFKKNTHTKIDPIIKDLEATASSDFPHLQHLLWASRDYLYPMLDNAQTERSRD----------QIKFEKHLEAAEQIINQ 111

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BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Match: A0A517PYU4_9PLAN (Uncharacterized protein n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PYU4_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 7.860e-24
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 1

Query:    1 GRVELKKMNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHLQHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECIIN 324
            G+ ELKK+  VY++FLALQ  + SDAEW +F+K+V+ E+ P++K L + A  +YPHLQH+LWA RD+L  ML   RT        P +D   Q  F K+LK AE +IN
Sbjct:   56 GKAELKKLQEVYQKFLALQKLQASDAEWEQFKKQVQGELKPVVKYLSETACSEYPHLQHMLWASRDWLPKMLDSART-------TPSQD---QVKFVKNLKRAEQLIN 153

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig123868.4884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15


Match Name	E-value	Identity	Description
A0A517W8M0_9PLAN	7.840e-72	96.33	Uncharacterized protein n=1 Tax=Gimesia chilikensi...	[more]
UPI00118A29B3	7.840e-72	97.25	hypothetical protein n=1 Tax=Gimesia chilikensis T...	[more]
A0A517VRR8_9PLAN	1.380e-33	62.04	Uncharacterized protein n=1 Tax=Gimesia aquarii Ta...	[more]
A0A517RP51_9PLAN	5.670e-28	56.88	Uncharacterized protein n=1 Tax=Gimesia alba TaxID...	[more]
A0A518IKY1_9PLAN	8.200e-27	56.48	Uncharacterized protein n=1 Tax=Gimesia fumaroli T...	[more]
A0A2E7KFL0_9PLAN	1.510e-26	55.05	Uncharacterized protein n=8 Tax=Gimesia TaxID=1649...	[more]
A0A518AFW1_9PLAN	1.460e-25	54.63	Uncharacterized protein n=3 Tax=Gimesia panareensi...	[more]
A0A517VPP5_9PLAN	4.920e-25	50.93	Uncharacterized protein n=2 Tax=Gimesia aquarii Ta...	[more]
A0A517RP12_9PLAN	1.470e-24	48.60	Uncharacterized protein n=2 Tax=Gimesia alba TaxID...	[more]
A0A517PYU4_9PLAN	7.860e-24	48.15	Uncharacterized protein n=3 Tax=Gimesia chilikensi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig123868	contig	M-pyrifera_M_contig123868:8..337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	330
Cds size	309
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815757.1935632-CDS-M-pyrifera_M_contig123868:7..316	1622815757.1935632-CDS-M-pyrifera_M_contig123868:7..316	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig123868 8..316 -
1692277555.0428987-CDS-M-pyrifera_M_contig123868:7..316	1692277555.0428987-CDS-M-pyrifera_M_contig123868:7..316	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig123868 8..316 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815757.2100644-UTR-M-pyrifera_M_contig123868:316..337	1622815757.2100644-UTR-M-pyrifera_M_contig123868:316..337	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig123868 317..337 -
1692277555.05801-UTR-M-pyrifera_M_contig123868:316..337	1692277555.05801-UTR-M-pyrifera_M_contig123868:316..337	Macrocystis pyrifera P11B4 male	UTR	M-pyrifera_M_contig123868 317..337 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig123868.4884.1	prot_M-pyrifera_M_contig123868.4884.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig123868 8..316 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig123868:8..337-
coding sequence from alignment at M-pyrifera_M_contig123868:8..337-

protein sequence of mRNA_M-pyrifera_M_contig123868.4884.1

>prot_M-pyrifera_M_contig123868.4884.1 ID=prot_M-pyrifera_M_contig123868.4884.1|Name=mRNA_M-pyrifera_M_contig123868.4884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MNAVYKQFLALQTKKTSDAEWTRFEKKVRTEIDPIIKKLEDVAGPDYPHL
QHLLWAGRDYLYWMLKDCRTGRNCDGENPVKDHSVQELFEKHLKEAECII
NE*

mRNA from alignment at M-pyrifera_M_contig123868:8..337-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig123868.4884.1 ID=mRNA_M-pyrifera_M_contig123868.4884.1|Name=mRNA_M-pyrifera_M_contig123868.4884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig123868:8..337- (Macrocystis pyrifera P11B4 male)
GGACGCGTAGAATTAAAAAAAATGAATGCAGTATATAAACAGTTTCTCGC
TCTGCAAACAAAGAAAACGAGTGATGCAGAATGGACTCGCTTCGAGAAAA
AAGTCCGCACTGAAATAGACCCTATCATCAAAAAACTGGAAGATGTTGCA
GGCCCTGACTATCCCCATCTACAACATTTACTATGGGCAGGTAGAGATTA
TCTTTATTGGATGTTAAAAGATTGTCGTACAGGGAGAAATTGTGATGGAG
AAAACCCTGTAAAGGATCATAGTGTCCAGGAACTGTTTGAAAAACATCTA
AAAGAAGCGGAATGCATCATCAATGAATGA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123868:8..337-

>mRNA_M-pyrifera_M_contig123868.4884.1 ID=mRNA_M-pyrifera_M_contig123868.4884.1|Name=mRNA_M-pyrifera_M_contig123868.4884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig123868:8..337- (Macrocystis pyrifera P11B4 male)
ATGAATGCAGTATATAAACAGTTTCTCGCTCTGCAAACAAAGAAAACGAG
TGATGCAGAATGGACTCGCTTCGAGAAAAAAGTCCGCACTGAAATAGACC
CTATCATCAAAAAACTGGAAGATGTTGCAGGCCCTGACTATCCCCATCTA
CAACATTTACTATGGGCAGGTAGAGATTATCTTTATTGGATGTTAAAAGA
TTGTCGTACAGGGAGAAATTGTGATGGAGAAAACCCTGTAAAGGATCATA
GTGTCCAGGAACTGTTTGAAAAACATCTAAAAGAAGCGGAATGCATCATC
AATGAATGAATGAATGCAGTATATAAACAGTTTCTCGCTCTGCAAACAAA
GAAAACGAGTGATGCAGAATGGACTCGCTTCGAGAAAAAAGTCCGCACTG
AAATAGACCCTATCATCAAAAAACTGGAAGATGTTGCAGGCCCTGACTAT
CCCCATCTACAACATTTACTATGGGCAGGTAGAGATTATCTTTATTGGAT
GTTAAAAGATTGTCGTACAGGGAGAAATTGTGATGGAGAAAACCCTGTAA
AGGATCATAGTGTCCAGGAACTGTTTGAAAAACATCTAAAAGAAGCGGAA
TGCATCATCAATGAATGA