prot_M-pyrifera_M_contig123861.4883.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig123861.4883.1
Unique Name	prot_M-pyrifera_M_contig123861.4883.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	91

Homology

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BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518A516_9PLAN (Ribose transport system permease protein RbsC n=14 Tax=Planctomycetaceae TaxID=126 RepID=A0A518A516_9PLAN)

HSP 1 Score: 166 bits (420), Expect = 8.270e-49
Identity = 87/90 (96.67%), Postives = 90/90 (100.00%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 90
            QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSV+NTFFGVLIIAVLQTGLAQIGATDP+KRVITGAVIIVAVLLDAAR+RWKRGG
Sbjct:  246 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVVNTFFGVLIIAVLQTGLAQIGATDPIKRVITGAVIIVAVLLDAARRRWKRGG 335

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A517WW24_9PLAN (Ribose transport system permease protein RbsC n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WW24_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 3.600e-47
Identity = 85/90 (94.44%), Postives = 89/90 (98.89%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 90
            QTSRLSTADPNAAVGLEL+AIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQ+GA+DP+KRVITGAVIIVAVLLDAARQRWKR G
Sbjct:  245 QTSRLSTADPNAAVGLELAAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQVGASDPIKRVITGAVIIVAVLLDAARQRWKRRG 334

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A517V9F1_9PLAN (Ribose transport system permease protein RbsC n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A517V9F1_9PLAN)

HSP 1 Score: 161 bits (407), Expect = 7.360e-47
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 90
            QTSRLS+ADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGV+IIAVLQTGLAQIGATDP KRVITGAVIIVAVLLDAARQRWKR G
Sbjct:  246 QTSRLSSADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVMIIAVLQTGLAQIGATDPSKRVITGAVIIVAVLLDAARQRWKRRG 335

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A7W1J1H0_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1J1H0_9BACT)

HSP 1 Score: 147 bits (372), Expect = 1.030e-41
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG 90
            QT+RLSTADPNAA+G+ELSAIAACVIGGTSLMGGRGS++ TFFGVLIIAVLQTGLA +GA++PLKRVITGAVI+ AVLLDA RQRW R G
Sbjct:  237 QTARLSTADPNAAIGMELSAIAACVIGGTSLMGGRGSIVATFFGVLIIAVLQTGLANVGASEPLKRVITGAVIVAAVLLDALRQRWGRTG 326

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: UPI001EE865B2 (ABC transporter permease n=1 Tax=Rubinisphaera sp. ICM_H10 TaxID=2909586 RepID=UPI001EE865B2)

HSP 1 Score: 143 bits (361), Expect = 4.640e-40
Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWK 87
            QTSRLS+ADPNAAVGLEL+AIAACVIGGTSLMGGRGSVI+TFFGVLIIAVLQTGLA +GATDP+KR+ITG VI++AVLLDA RQR +
Sbjct:  236 QTSRLSSADPNAAVGLELAAIAACVIGGTSLMGGRGSVIHTFFGVLIIAVLQTGLAHVGATDPIKRIITGGVIVIAVLLDALRQRKR 322

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A7W1YJQ2_9BACT (ABC transporter permease n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1YJQ2_9BACT)

HSP 1 Score: 138 bits (347), Expect = 5.880e-40
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKR 88
            QT+RLSTADPNAAVGLELSAIAACVIGGTSL+GGRGSV+ T FGVLIIAVLQTGLAQ+G+++PLKRVITGAVI+ AVLLDA R R  R
Sbjct:   63 QTARLSTADPNAAVGLELSAIAACVIGGTSLLGGRGSVVATCFGVLIIAVLQTGLAQVGSSEPLKRVITGAVIVAAVLLDALRTRMSR 150

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518ITX8_9BACT (Ribose transport system permease protein RbsC n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518ITX8_9BACT)

HSP 1 Score: 139 bits (351), Expect = 1.230e-38
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 0

Query:    3 SRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRW 86
            SRLSTADPNAA+GLELSAIAACVIGGTSLMGGRG+VIN+F GVLIIAVLQTGLAQIG +DP+K++ITG+VI+VAVLLDA R RW
Sbjct:  231 SRLSTADPNAAIGLELSAIAACVIGGTSLMGGRGNVINSFLGVLIIAVLQTGLAQIGVSDPMKQIITGSVIVVAVLLDAIRSRW 314

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A518B5F7_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Planctomycetes bacterium Pan216 TaxID=2527975 RepID=A0A518B5F7_9BACT)

HSP 1 Score: 139 bits (350), Expect = 2.410e-38
Identity = 70/88 (79.55%), Postives = 82/88 (93.18%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKR 88
            QTSRLS+ADPNAAVGLEL+AIAACVIGGTSL GGRGS+I+TFFGVL+I VLQTGLAQ+GA+DP KR+ITG+VI+VAVLLDA R+ W +
Sbjct:  245 QTSRLSSADPNAAVGLELAAIAACVIGGTSLAGGRGSIISTFFGVLMITVLQTGLAQVGASDPTKRIITGSVIVVAVLLDALRRNWGK 332

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A5C6F2B5_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Rubripirellula tenax TaxID=2528015 RepID=A0A5C6F2B5_9BACT)

HSP 1 Score: 138 bits (348), Expect = 3.380e-38
Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 0

Query:    3 SRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRW--KRG 89
            SRLSTADPNAA+GLELSAIAACVIGGTSLMGGRG+VIN+F GVLIIAVLQTGLAQ+G +DP+K++ITG VI+VAVLLDA R RW  +RG
Sbjct:  231 SRLSTADPNAAMGLELSAIAACVIGGTSLMGGRGNVINSFLGVLIIAVLQTGLAQVGVSDPMKQIITGTVIVVAVLLDAMRSRWGHRRG 319

[Close]

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Match: A0A5C5WTL7_9BACT (Ribose transport system permease protein RbsC n=1 Tax=Rubripirellula amarantea TaxID=2527999 RepID=A0A5C5WTL7_9BACT)

HSP 1 Score: 137 bits (344), Expect = 1.390e-37
Identity = 72/87 (82.76%), Postives = 81/87 (93.10%), Query Frame = 0

Query:    1 QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAVLQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWK 87
            QTSRL++ADPNAA+G+ELSAIAACVIGGTSLMGGRGSVI++F GVLIIAVLQTGLAQIG +D  K++ITGAVIIVAVLLDAAR RW 
Sbjct:  229 QTSRLASADPNAAIGIELSAIAACVIGGTSLMGGRGSVISSFIGVLIIAVLQTGLAQIGVSDANKQIITGAVIIVAVLLDAARIRWS 315

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig123861.4883.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A518A516_9PLAN	8.270e-49	96.67	Ribose transport system permease protein RbsC n=14...	[more]
A0A517WW24_9PLAN	3.600e-47	94.44	Ribose transport system permease protein RbsC n=2 ...	[more]
A0A517V9F1_9PLAN	7.360e-47	95.56	Ribose transport system permease protein RbsC n=5 ...	[more]
A0A7W1J1H0_9BACT	1.030e-41	83.33	ABC transporter permease n=1 Tax=Planctomycetes ba...	[more]
UPI001EE865B2	4.640e-40	85.06	ABC transporter permease n=1 Tax=Rubinisphaera sp....	[more]
A0A7W1YJQ2_9BACT	5.880e-40	82.95	ABC transporter permease n=1 Tax=Planctomycetes ba...	[more]
A0A518ITX8_9BACT	1.230e-38	84.52	Ribose transport system permease protein RbsC n=4 ...	[more]
A0A518B5F7_9BACT	2.410e-38	79.55	Ribose transport system permease protein RbsC n=1 ...	[more]
A0A5C6F2B5_9BACT	3.380e-38	80.90	Ribose transport system permease protein RbsC n=1 ...	[more]
A0A5C5WTL7_9BACT	1.390e-37	82.76	Ribose transport system permease protein RbsC n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001851	ABC transporter, permease	PFAM	PF02653	BPD_transp_2	coord: 4..77 e-value: 9.2E-12 score: 44.7
None	No IPR available	PANTHER	PTHR32196:SF66		coord: 1..88
None	No IPR available	PANTHER	PTHR32196	FAMILY NOT NAMED	coord: 1..88
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 38..58
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 59..63
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 83..90
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 32..37
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 64..82
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 12..34
None	No IPR available	TMHMM	TMhelix		coord: 38..60

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig123861	contig	M-pyrifera_M_contig123861:3..275 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig123861.4883.1	mRNA_M-pyrifera_M_contig123861.4883.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig123861 3..275 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig123861.4883.1 ID=prot_M-pyrifera_M_contig123861.4883.1|Name=mRNA_M-pyrifera_M_contig123861.4883.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
QTSRLSTADPNAAVGLELSAIAACVIGGTSLMGGRGSVINTFFGVLIIAV
LQTGLAQIGATDPLKRVITGAVIIVAVLLDAARQRWKRGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001851	ABC_transp_permease