mRNA_M-pyrifera_M_contig123842.4879.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123842.4879.1
Unique NamemRNA_M-pyrifera_M_contig123842.4879.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A517PQ92_9PLAN (Multidrug resistance protein MdtA n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517PQ92_9PLAN)

HSP 1 Score: 291 bits (746), Expect = 3.040e-95
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
Query:    1 QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE
Sbjct:   62 QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 224          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A517WEF5_9PLAN (Multidrug resistance protein MdtA n=3 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517WEF5_9PLAN)

HSP 1 Score: 282 bits (722), Expect = 4.710e-92
Identity = 156/163 (95.71%), Postives = 162/163 (99.39%), Query Frame = 1
Query:    1 QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            QQSQEQGIPVEV+ELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQA+L+ELLAGPRPQTIAAAEA VRQLIA+LKNLQ+DHARNEQLLERNAISK+VYEASQYDVQQQQAQLDAAKSQLSE
Sbjct:   28 QQSQEQGIPVEVVELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQAKLDELLAGPRPQTIAAAEATVRQLIAKLKNLQADHARNEQLLERNAISKAVYEASQYDVQQQQAQLDAAKSQLSE 190          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A518A7Y0_9PLAN (Solvent efflux pump periplasmic linker SrpA n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7Y0_9PLAN)

HSP 1 Score: 265 bits (678), Expect = 5.480e-85
Identity = 145/163 (88.96%), Postives = 158/163 (96.93%), Query Frame = 1
Query:    1 QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            QQ+ E+GIPVEV+ELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIE++VDEGDPVKA M+LARLDTRHLKI+RQKLQA+RDAAQA+L ELLAGPRPQTIAAAEAAVRQL A+LKNLQ+DH RNEQLL+RNAISKSV+EASQYDVQQQQAQLDAAKSQLSE
Sbjct:   62 QQASERGIPVEVVELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEVSVDEGDPVKAGMVLARLDTRHLKIIRQKLQAQRDAAQAKLAELLAGPRPQTIAAAEAAVRQLNAKLKNLQADHVRNEQLLQRNAISKSVFEASQYDVQQQQAQLDAAKSQLSE 224          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A517RH14_9PLAN (Multidrug resistance protein MdtA n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RH14_9PLAN)

HSP 1 Score: 218 bits (556), Expect = 6.760e-67
Identity = 117/159 (73.58%), Postives = 142/159 (89.31%), Query Frame = 1
Query:   13 EQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            E G+PVEV++LKPVDSF R+R+YTG+V AARTSEL+ ERSGKL+ + VDEGD V+  M+LA LDTRHL++VR +LQAERD AQA+L+E  AGPRPQTIA AEA VRQL A+LKNL++DHARNE+LL+RNAISKSV+EASQYDV+QQQAQLDAA+S+LSE
Sbjct:   45 EVGVPVEVVKLKPVDSFDRQRSYTGRVVAARTSELAFERSGKLLNVTVDEGDSVRETMVLANLDTRHLEVVRLQLQAERDVAQAKLDEFKAGPRPQTIAVAEAEVRQLSAKLKNLKADHARNEELLKRNAISKSVFEASQYDVEQQQAQLDAAQSRLSE 203          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A6CAC3_9PLAN (HlyD_D23 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A6CAC3_9PLAN)

HSP 1 Score: 214 bits (544), Expect = 6.960e-65
Identity = 118/162 (72.84%), Postives = 142/162 (87.65%), Query Frame = 1
Query:    4 QSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            ++++ GIPV+V+EL+PVDSFARKRTYTGKV AAR SEL+ ERSGKL EI VDEGD V+  M+LARLDTRHL++ R KLQAER AAQA+L+EL AGPR QT+A AEA VRQL ARLKNL +DH+RN+QLL+RNAI+ S YEASQY+V+QQQAQLDAA+S+LSE
Sbjct:   62 ETRQSGIPVDVIELEPVDSFARKRTYTGKVTAARLSELAFERSGKLTEIVVDEGDQVQTGMVLARLDTRHLEVSRLKLQAERAAAQAKLDELQAGPRAQTVAVAEAEVRQLNARLKNLLADHSRNQQLLKRNAITSSDYEASQYEVEQQQAQLDAARSRLSE 223          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A2E2C317_9PLAN (Efflux transporter periplasmic adaptor subunit n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C317_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 2.670e-64
Identity = 117/161 (72.67%), Postives = 138/161 (85.71%), Query Frame = 1
Query:    7 SQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            S+  G+PV V+EL+PVDSFAR RTYTGKV AAR SEL+ ER GKL+EI VDEGD V A  +LARL+TRHL+++R KLQAER  AQA+L EL+AGPR QTIA AEA VRQL ARLKNLQ+DHAR+EQLL+RNAI+ S +EASQYDV+QQQAQLDAA+S+LSE
Sbjct:   76 SKSSGVPVNVIELQPVDSFARTRTYTGKVSAARVSELAFERDGKLVEIVVDEGDSVPAGKVLARLNTRHLEVIRLKLQAERATAQAKLEELIAGPRKQTIAVAEAEVRQLNARLKNLQADHARSEQLLKRNAITSSDFEASQYDVEQQQAQLDAARSRLSE 236          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A518IDY0_9PLAN (Efflux pump periplasmic linker BepF n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IDY0_9PLAN)

HSP 1 Score: 211 bits (537), Expect = 4.080e-64
Identity = 114/157 (72.61%), Postives = 140/157 (89.17%), Query Frame = 1
Query:   19 GIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            G+PVEV++LKPV SF R+R+YTG+V AARTSEL+ ERSGKLI + VDEGD V+ +M+LA L+TRHL++VR +LQAER AAQA+LNEL AGPR QTIA AEA  RQL +RLKNL++DHARNE+LL+RNAISKSV+EASQYDV+QQQAQLDAA+++LSE
Sbjct:   41 GVPVEVVKLKPVKSFVRQRSYTGRVAAARTSELAFERSGKLINVAVDEGDTVQENMVLANLNTRHLEVVRLQLQAERAAAQAKLNELKAGPRQQTIAVAEAEARQLSSRLKNLKADHARNEELLKRNAISKSVFEASQYDVEQQQAQLDAAQNRLSE 197          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A517VFN7_9PLAN (Efflux pump periplasmic linker BepF n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFN7_9PLAN)

HSP 1 Score: 208 bits (529), Expect = 1.210e-62
Identity = 115/157 (73.25%), Postives = 138/157 (87.90%), Query Frame = 1
Query:   19 GIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            GIPV+V+ELKPV SF+RKRTYTGKV AAR SEL+ ERSGKL EI VDEGD V+  M+LA+L+TRHL+++R KLQAER AAQA+L+EL AGPR QT+A AEA VR+L ARLKNLQ+DH RN++LL+RNAI+ S YEASQYDV+QQQAQLDAA+S+LSE
Sbjct:   67 GIPVDVIELKPVHSFSRKRTYTGKVTAARVSELAFERSGKLFEIVVDEGDQVQEGMVLAQLNTRHLQVMRLKLQAERAAAQAKLDELEAGPRVQTVAVAEAEVRRLNARLKNLQADHDRNQKLLKRNAITSSDYEASQYDVEQQQAQLDAARSRLSE 223          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A517WZW3_9PLAN (Toluene efflux pump periplasmic linker protein TtgG n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WZW3_9PLAN)

HSP 1 Score: 196 bits (497), Expect = 7.150e-58
Identity = 112/159 (70.44%), Postives = 131/159 (82.39%), Query Frame = 1
Query:   13 EQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQQAQLDAAKSQLSE 489
            +QGIPV V+ELKPV SF RKR YTGKV AARTSEL+ ERSGKLI+I+VDEGD V+  M LA L TRHL ++R KLQAER AAQA+L E LAGPR Q I  AEA VRQL A+ KNL +DH RN++LL+RNAISKSV+EAS+ D+QQQ+AQLDAA S+LSE
Sbjct:   65 QQGIPVNVIELKPVKSFTRKRNYTGKVTAARTSELAFERSGKLIKISVDEGDHVEVGMPLANLSTRHLDVMRLKLQAERAAAQAKLEEFLAGPRRQEIEVAEAEVRQLKAKHKNLDADHIRNQKLLKRNAISKSVFEASESDLQQQKAQLDAAISRLSE 223          
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Match: A0A350KFV8_9PLAN (Biotin_lipoyl_2 domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KFV8_9PLAN)

HSP 1 Score: 162 bits (411), Expect = 7.360e-49
Identity = 89/122 (72.95%), Postives = 104/122 (85.25%), Query Frame = 1
Query:    4 QSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEINVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQTIAAAEAAVRQLIARLKNLQSDH 369
            ++++ GIPV+V+ELKPVDSFARKRTYTGKV AAR SEL+ ERSGKL EI VDEGD V+  M+LARLDTRHL++ R KLQAER AAQA+L+EL AGPR QT+A AEA VRQL ARLKNL +DH
Sbjct:    3 ETRQSGIPVDVIELKPVDSFARKRTYTGKVTAARLSELAFERSGKLTEIVVDEGDQVQTGMVLARLDTRHLEVSRLKLQAERAAAQAKLDELEAGPRSQTVAVAEAEVRQLNARLKNLLADH 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123842.4879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PQ92_9PLAN3.040e-95100.00Multidrug resistance protein MdtA n=6 Tax=Gimesia ... [more]
A0A517WEF5_9PLAN4.710e-9295.71Multidrug resistance protein MdtA n=3 Tax=Gimesia ... [more]
A0A518A7Y0_9PLAN5.480e-8588.96Solvent efflux pump periplasmic linker SrpA n=6 Ta... [more]
A0A517RH14_9PLAN6.760e-6773.58Multidrug resistance protein MdtA n=1 Tax=Gimesia ... [more]
A6CAC3_9PLAN6.960e-6572.84HlyD_D23 domain-containing protein n=6 Tax=Gimesia... [more]
A0A2E2C317_9PLAN2.670e-6472.67Efflux transporter periplasmic adaptor subunit n=4... [more]
A0A518IDY0_9PLAN4.080e-6472.61Efflux pump periplasmic linker BepF n=1 Tax=Gimesi... [more]
A0A517VFN7_9PLAN1.210e-6273.25Efflux pump periplasmic linker BepF n=1 Tax=Gimesi... [more]
A0A517WZW3_9PLAN7.150e-5870.44Toluene efflux pump periplasmic linker protein Ttg... [more]
A0A350KFV8_9PLAN7.360e-4972.95Biotin_lipoyl_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123842contigM-pyrifera_M_contig123842:3..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score220.3
Seed ortholog evalue6.5e-55
Seed eggNOG ortholog344747.PM8797T_27140
KEGG koko:K18302
KEGG TC2.A.6.2,8.A.1
KEGG ModuleM00642
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Biotin-lipoyl like
EggNOG OGs2IZSE@203682,COG0845@1,COG0845@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01504,ko02000
Exons1
Model size489
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.9644892-CDS-M-pyrifera_M_contig123842:2..4911622815756.9644892-CDS-M-pyrifera_M_contig123842:2..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123842 3..491 -
1692277554.9641747-CDS-M-pyrifera_M_contig123842:2..4911692277554.9641747-CDS-M-pyrifera_M_contig123842:2..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123842 3..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123842.4879.1prot_M-pyrifera_M_contig123842.4879.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123842 3..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123842.4879.1

>prot_M-pyrifera_M_contig123842.4879.1 ID=prot_M-pyrifera_M_contig123842.4879.1|Name=mRNA_M-pyrifera_M_contig123842.4879.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
QQSQEQGIPVEVLELKPVDSFARKRTYTGKVEAARTSELSLERSGKLIEI
NVDEGDPVKADMILARLDTRHLKIVRQKLQAERDAAQARLNELLAGPRPQ
TIAAAEAAVRQLIARLKNLQSDHARNEQLLERNAISKSVYEASQYDVQQQ
QAQLDAAKSQLSE
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mRNA from alignment at M-pyrifera_M_contig123842:3..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123842.4879.1 ID=mRNA_M-pyrifera_M_contig123842.4879.1|Name=mRNA_M-pyrifera_M_contig123842.4879.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig123842:3..491- (Macrocystis pyrifera P11B4 male)
CAGCAGTCTCAGGAGCAGGGGATTCCCGTTGAAGTTTTAGAGCTGAAACC CGTCGATTCATTTGCGCGGAAACGCACCTATACCGGTAAAGTTGAAGCTG CACGCACCAGCGAACTCTCTCTGGAACGCAGCGGCAAGCTGATTGAGATC AATGTGGACGAAGGAGATCCGGTTAAAGCCGATATGATCCTGGCCCGACT CGATACCCGTCACCTGAAGATTGTCCGTCAGAAGCTCCAGGCAGAGCGGG ATGCGGCTCAGGCCAGGCTGAATGAACTCCTGGCAGGTCCCCGTCCCCAG ACCATTGCCGCCGCCGAGGCAGCTGTCAGGCAGCTGATAGCCAGGCTGAA AAATCTGCAGTCGGACCATGCCCGCAACGAACAACTATTGGAACGCAATG CAATCTCCAAGTCTGTGTATGAAGCTTCGCAATACGATGTCCAGCAGCAG CAGGCACAGCTCGATGCGGCGAAGAGTCAACTCTCGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123842:3..491-

>mRNA_M-pyrifera_M_contig123842.4879.1 ID=mRNA_M-pyrifera_M_contig123842.4879.1|Name=mRNA_M-pyrifera_M_contig123842.4879.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig123842:3..491- (Macrocystis pyrifera P11B4 male)
CAGCAGTCTCAGGAGCAGGGGATTCCCGTTGAAGTTTTAGAGCTGAAACC
CGTCGATTCATTTGCGCGGAAACGCACCTATACCGGTAAAGTTGAAGCTG
CACGCACCAGCGAACTCTCTCTGGAACGCAGCGGCAAGCTGATTGAGATC
AATGTGGACGAAGGAGATCCGGTTAAAGCCGATATGATCCTGGCCCGACT
CGATACCCGTCACCTGAAGATTGTCCGTCAGAAGCTCCAGGCAGAGCGGG
ATGCGGCTCAGGCCAGGCTGAATGAACTCCTGGCAGGTCCCCGTCCCCAG
ACCATTGCCGCCGCCGAGGCAGCTGTCAGGCAGCTGATAGCCAGGCTGAA
AAATCTGCAGTCGGACCATGCCCGCAACGAACAACTATTGGAACGCAATG
CAATCTCCAAGTCTGTGTATGAAGCTTCGCAATACGATGTCCAGCAGCAG
CAGGCACAGCTCGATGCGGCGAAGAGTCAACTCTCGGAACAGCAGTCTCA
GGAGCAGGGGATTCCCGTTGAAGTTTTAGAGCTGAAACCCGTCGATTCAT
TTGCGCGGAAACGCACCTATACCGGTAAAGTTGAAGCTGCACGCACCAGC
GAACTCTCTCTGGAACGCAGCGGCAAGCTGATTGAGATCAATGTGGACGA
AGGAGATCCGGTTAAAGCCGATATGATCCTGGCCCGACTCGATACCCGTC
ACCTGAAGATTGTCCGTCAGAAGCTCCAGGCAGAGCGGGATGCGGCTCAG
GCCAGGCTGAATGAACTCCTGGCAGGTCCCCGTCCCCAGACCATTGCCGC
CGCCGAGGCAGCTGTCAGGCAGCTGATAGCCAGGCTGAAAAATCTGCAGT
CGGACCATGCCCGCAACGAACAACTATTGGAACGCAATGCAATCTCCAAG
TCTGTGTATGAAGCTTCGCAATACGATGTCCAGCAGCAGCAGGCACAGCT
CGATGCGGCGAAGAGTCAACTCTCGGAA
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