mRNA_M-pyrifera_M_contig12358.4825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12358.4825.1
Unique NamemRNA_M-pyrifera_M_contig12358.4825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A7S0U011_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U011_HEMAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.400e-13
Identity = 58/180 (32.22%), Postives = 83/180 (46.11%), Query Frame = 1
Query:   16 LAQACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVSVPDNL---VFDTAVR-GHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARDYSGTPVLHIAVINGRLRIV-KXXXXXXXXXXSVDRINSTPLMDAA 540
            L +A   GD EAV+RL++ G +P E  +         LH A+  GHLS++Q L+Q  A+V+  D       D AVR GH +    L  AGA +        +   +AD  G       +  +VL+  G      DY     LH+A  NG + I+ K          SVDR+  TPL +A+
Sbjct:  202 LCEAASIGDTEAVERLMENGVEPMEADY----DDRTALHLASCEGHLSVVQLLLQHKADVTAKDRFGWNALDDAVRHGHKEVQAALREAGANLSVGDMGVRMCQAAADDDG-------ETLEVLLVNGVHSSTADYDSRTALHLAAANGNISIIDKLLRLEGIEVNSVDRVGGTPLEEAS 370          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: UPI000C6D2315 (caseinolytic peptidase B protein homolog n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D2315)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-8
Identity = 44/138 (31.88%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   10 GSLAQACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVSVPDNL--VFDTAVRGHADALRLLFAAGARV-DRSSKPPLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARDYS 414
            G L +A + G+EE+V+RL+++G D N+   LGW      LH AA NGH  ++  L++AGA+ ++ D    V+  A   +  +L +L A      DR +        +A H+ +  D+ ++    L+E GAD   R+ S
Sbjct:  101 GRLLKAAKQGNEESVKRLIESGGDVNQRHKLGWTV----LHVAAMNGHSEVVNILLKAGADPNLGDEFTNVYQVAKEKNLHSLEVLVAREDEFSDRLNNRATFRNCTALHYAVLADD-IRTVHYLLEHGADPTIRNDS 233          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: UPI0009A2A564 (protein phosphatase 1 regulatory subunit 16A-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2A564)

HSP 1 Score: 59.7 bits (143), Expect = 3.210e-7
Identity = 48/147 (32.65%), Postives = 69/147 (46.94%), Query Frame = 1
Query:   22 QACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGAN---VSVPDNLVFDTAVRGHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDE-MLQVAQVLIEAGADIEARDYSGTPVLHIAVING 450
            Q C D  EE V+ LL+  AD N      W     PLHAAA  GHL ++Q LIQ GAN   V+   N+ +D       D + L +   A   +      +     D   +  +  M++  Q L+E   D+ +++  GT +LHIA  NG
Sbjct:   10 QCCIDDYEEIVKLLLEAKADVNACDSELW----TPLHAAATCGHLHLVQELIQHGANLMAVNADGNMPYDLCE----DDVTLDYIESAMAQQD-----ITQEKIDESRMATERWMVEDIQRLLENETDLNSQNDVGTSLLHIAAANG 143          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A2D8RAU1_9GAMM (Uncharacterized protein n=1 Tax=Hahellaceae bacterium TaxID=2048971 RepID=A0A2D8RAU1_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 4.260e-7
Identity = 50/155 (32.26%), Postives = 71/155 (45.81%), Query Frame = 1
Query:    7 AGSLAQACRDGDEEAVQRLLDTGADPN--EPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVSVPDNLVFDTAV-------RGHADALRLLFAAGARVDRS-SKPPLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARDYSGTPVLHIAV 441
            A ++  A   GD + +   L  GADPN  +P ++       PLH AAR G    +Q L  +GA ++   +   D A         GH    + L  AGARV+      PLL +       + E   L +AQV++ AGA + ARD  G   L +AV
Sbjct:   30 ATAVLSAANKGDTQRLVDQLAEGADPNITDPANME-----TPLHIAARRGDSRAVQALAASGAELNARRS---DGATPLALAITNGHLSTSKALIRAGARVNTQYQNKPLLMI-------VVEQGSLLMAQVMLSAGASVNARDAEGETALMVAV 169          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: UPI0018F5C9AB (protein phosphatase 1 regulatory subunit 16A n=1 Tax=Scyliorhinus canicula TaxID=7830 RepID=UPI0018F5C9AB)

HSP 1 Score: 59.3 bits (142), Expect = 4.620e-7
Identity = 47/150 (31.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query:   13 SLAQACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGAN---VSVPDNLVFDTAVRGHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDE-MLQVAQVLIEAGADIEARDYSGTPVLHIAVING 450
            +L Q C D  EE V+ LL+  AD N      W     PLHAAA  GHL ++Q LIQ GAN   V+   N+ +D       D + L +   A   +      +     D   +  ++ M++  + L+E+  ++  ++  GT +LHIA  NG
Sbjct:  103 ALHQCCIDDYEEIVKLLLEAQADVNACDSELW----TPLHAAATCGHLHLVQQLIQHGANLMAVNADGNMPYDLCE----DDVTLDYIESAMAQQD-----ITQEKIDESRMATEKWMIEDIRQLLESNTELNRQNDVGTCLLHIAAANG 239          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A175W9E0_9PEZI (Ankyrin-2 n=1 Tax=Madurella mycetomatis TaxID=100816 RepID=A0A175W9E0_9PEZI)

HSP 1 Score: 58.9 bits (141), Expect = 7.280e-7
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 1
Query:   37 GDEEAVQRLLDTGADPNEPTHLGWLYPV-NPLHAAARNGHLSIMQNLIQAGANVSVPDNLVFDTAVR-----GHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDEM-LQVAQVLIEAGADIEARDYSGTPVL 429
            G   A   LL  GADP+     G    +  PL AAA NG    ++ L++  AN ++       TA++     G+ +  RLL   GA  +     P + ++   H    E ++ L++ ++LI+ GAD+ A+D  GTPVL
Sbjct:  774 GHYAAATELLQLGADPDMGLTAGSTIDIWCPLVAAADNGLARCVKALLEHNANPNITGPTGQGTALQNAATSGYIEPCRLLLEGGADPNSPLIQPPIVIQVVQHLVTDEPDLCLEIVRLLIDNGADVNAKDSEGTPVL 911          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A178AZP1_9PLEO (Ankyrin n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=765868 RepID=A0A178AZP1_9PLEO)

HSP 1 Score: 57.0 bits (136), Expect = 1.890e-6
Identity = 49/163 (30.06%), Postives = 70/163 (42.94%), Query Frame = 1
Query:   61 LLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVS----VPDNLVFDTAVRGHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARD--YSGTPVLHIAVINGRL-RIVKXXXXXXXXXXSVDRINSTPL 528
            LL  GA+PN    +   YP   LH AA  G   ++Q L+  GAN+          ++  +   H   +RLL  AGA+ D        ALR+A          + VA++L+  GAD   RD  + G  VLH  V +    R+V+          + D    TPL
Sbjct:    2 LLKRGANPNVIEGVSGWYP---LHIAAGRGDYQVVQLLVGYGANIDSVERTAQTALYLASTYCHVPVIRLLLDAGAKPDLPDYETACALRAATRAISHAKGAVDVAELLLNHGADPNRRDTRFGGNTVLHKVVCHANCGRMVEVLLSYGADVMAKDYRGRTPL 161          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: UPI001B7EBAE3 (protein phosphatase 1 regulatory subunit 16A isoform X1 n=3 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7EBAE3)

HSP 1 Score: 57.0 bits (136), Expect = 2.870e-6
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:   13 SLAQACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGAN---VSVPDNLVFDTAVRGHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDE-MLQVAQVLIEAGADIEARDYSGTPVLHIAVING 450
            +L Q C D  E+ V+ LL+  A+ N      W     PLHAAA  GHL ++Q LIQ GAN   V+   N+ +D       D + L +   A   ++     +     D   +  +  M++  + L+E   D+ +++  GT +LHIA  NG
Sbjct:  103 ALHQCCIDDYEDIVKLLLEAKANVNACDSELW----TPLHAAATCGHLHLVQQLIQHGANLMAVNADGNMPYDLCE----DDVTLDYIESAMAQQAD----ITQEKIDEARMATERWMIKDIRRLLETEVDLNSQNDVGTCLLHIAAANG 240          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A0D0E798_9AGAM (Uncharacterized protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0E798_9AGAM)

HSP 1 Score: 56.6 bits (135), Expect = 4.290e-6
Identity = 43/137 (31.39%), Postives = 60/137 (43.80%), Query Frame = 1
Query:   46 EAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVSVPDNLVFDTAVRGHADALRLLFAAGARVDRSSKPPLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARDYSGTPVLHIAVINGRL 456
            +A + L+  G  P+     G      PLH A ++GH+S+ + L+     +     L    A RGHA  + +L   GA V   S      L         ED+ LQ A+ LI+AG D  A D SG   LH  V  G +
Sbjct:  562 QAAKLLIGAGCGPSMLDSNGR----TPLHIAIQHGHVSVGEYLLSFCVLLPPDILLTAARAQRGHAQMMCVLIDRGANVHIFSPRGESVLHVTTRNVPSEDQSLQSAKALIDAGCDPSASDSSGKTPLHAVVTKGHI 694          
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Match: A0A0C9TY81_PAXIN (Uncharacterized protein n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9TY81_PAXIN)

HSP 1 Score: 55.8 bits (133), Expect = 5.680e-6
Identity = 44/148 (29.73%), Postives = 75/148 (50.68%), Query Frame = 1
Query:   46 EAVQRLLDTGADP--NEPTHLGWLYPVNPLHAAARNGHLSIMQNLIQAGANVSVPDNLVFDTAVRGH---ADALRLLFAAGARVDRSSKPPLLALRSADHFG--LGEDEMLQVAQVLIEAGADIEARDYSGTPVLHIAVINGRLRIVK 468
            E V+ L+D+G DP  +   H        PLH AA  GH+SIM+ L+    +  +P +++  TA R     A+ + +L   GA V   ++    AL    H G  L   ++L+  ++L+++G D  A +     +LHIA + G + I++
Sbjct:  157 ETVKILVDSGCDPAASNSRH------ETPLHIAAIQGHVSIMEYLLSL--DTPLPLDILPYTAARARHMKAEMINILIDKGADVHARTRGGENALDVTYHQGIELESRDILETVKILVDSGCDPAASNSRHETLLHIATMKGHVSIME 296          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12358.4825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0U011_HEMAN1.400e-1332.22Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
UPI000C6D23151.230e-831.88caseinolytic peptidase B protein homolog n=1 Tax=C... [more]
UPI0009A2A5643.210e-732.65protein phosphatase 1 regulatory subunit 16A-like ... [more]
A0A2D8RAU1_9GAMM4.260e-732.26Uncharacterized protein n=1 Tax=Hahellaceae bacter... [more]
UPI0018F5C9AB4.620e-731.33protein phosphatase 1 regulatory subunit 16A n=1 T... [more]
A0A175W9E0_9PEZI7.280e-731.16Ankyrin-2 n=1 Tax=Madurella mycetomatis TaxID=1008... [more]
A0A178AZP1_9PLEO1.890e-630.06Ankyrin n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=7... [more]
UPI001B7EBAE32.870e-630.67protein phosphatase 1 regulatory subunit 16A isofo... [more]
A0A0D0E798_9AGAM4.290e-631.39Uncharacterized protein n=1 Tax=Paxillus rubicundu... [more]
A0A0C9TY81_PAXIN5.680e-629.73Uncharacterized protein n=1 Tax=Paxillus involutus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12358contigM-pyrifera_M_contig12358:4392..4940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score69.3
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog136037.KDR17549
KEGG koko:K17458
Hectar predicted targeting categoryother localisation
GOsGO:0002009,GO:0002165,GO:0003674,GO:0005488,GO:0005515,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008157,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0010921,GO:0017020,GO:0019208,GO:0019220,GO:0019222,GO:0019888,GO:0019899,GO:0019902,GO:0019903,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035303,GO:0035304,GO:0043666,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051174,GO:0051246,GO:0051336,GO:0060255,GO:0060429,GO:0060562,GO:0065007,GO:0065009,GO:0080090,GO:0098772
EggNOG free text desc.Protein phosphatase 1 regulatory
EggNOG OGs38DQ9@33154,3B989@33208,3CTQH@33213,3SIET@50557,41UK2@6656,COG0666@1,KOG0505@2759
COG Functional cat.OT
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size549
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.2354627-CDS-M-pyrifera_M_contig12358:4391..49401622815754.2354627-CDS-M-pyrifera_M_contig12358:4391..4940Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12358 4392..4940 +
1692277553.6738284-CDS-M-pyrifera_M_contig12358:4391..49401692277553.6738284-CDS-M-pyrifera_M_contig12358:4391..4940Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12358 4392..4940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12358.4825.1prot_M-pyrifera_M_contig12358.4825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12358 4392..4940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12358.4825.1

>prot_M-pyrifera_M_contig12358.4825.1 ID=prot_M-pyrifera_M_contig12358.4825.1|Name=mRNA_M-pyrifera_M_contig12358.4825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
MVAGSLAQACRDGDEEAVQRLLDTGADPNEPTHLGWLYPVNPLHAAARNG
HLSIMQNLIQAGANVSVPDNLVFDTAVRGHADALRLLFAAGARVDRSSKP
PLLALRSADHFGLGEDEMLQVAQVLIEAGADIEARDYSGTPVLHIAVING
RLRIVKFLVEAGASLESVDRINSTPLMDAANFG
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mRNA from alignment at M-pyrifera_M_contig12358:4392..4940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12358.4825.1 ID=mRNA_M-pyrifera_M_contig12358.4825.1|Name=mRNA_M-pyrifera_M_contig12358.4825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig12358:4392..4940+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCTGGAAGCTTGGCGCAAGCTTGTAGAGATGGCGACGAAGAGGC CGTGCAACGACTCTTGGACACGGGCGCCGACCCAAATGAGCCAACGCATC TGGGGTGGTTGTATCCTGTAAACCCGCTCCATGCAGCTGCAAGGAATGGG CACTTGTCTATTATGCAAAATTTGATCCAGGCAGGCGCAAACGTGAGCGT CCCAGACAACCTCGTATTTGACACGGCAGTCCGTGGGCATGCTGACGCGT TGCGCCTCCTGTTTGCTGCTGGAGCAAGGGTGGATCGCTCAAGCAAGCCC CCCTTGCTTGCCCTTCGTTCTGCTGACCATTTCGGTCTCGGGGAAGACGA AATGTTGCAAGTAGCGCAGGTTCTCATCGAAGCTGGAGCAGACATTGAAG CAAGGGATTACAGCGGCACACCTGTGCTTCATATTGCTGTGATAAATGGC CGCCTTCGCATCGTGAAGTTCCTTGTTGAAGCAGGTGCGAGTTTGGAAAG TGTCGACAGAATCAATTCGACACCTCTTATGGATGCAGCCAACTTCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12358:4392..4940+

>mRNA_M-pyrifera_M_contig12358.4825.1 ID=mRNA_M-pyrifera_M_contig12358.4825.1|Name=mRNA_M-pyrifera_M_contig12358.4825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig12358:4392..4940+ (Macrocystis pyrifera P11B4 male)
ATGGTGGCTGGAAGCTTGGCGCAAGCTTGTAGAGATGGCGACGAAGAGGC
CGTGCAACGACTCTTGGACACGGGCGCCGACCCAAATGAGCCAACGCATC
TGGGGTGGTTGTATCCTGTAAACCCGCTCCATGCAGCTGCAAGGAATGGG
CACTTGTCTATTATGCAAAATTTGATCCAGGCAGGCGCAAACGTGAGCGT
CCCAGACAACCTCGTATTTGACACGGCAGTCCGTGGGCATGCTGACGCGT
TGCGCCTCCTGTTTGCTGCTGGAGCAAGGGTGGATCGCTCAAGCAAGCCC
CCCTTGCTTGCCCTTCGTTCTGCTGACCATTTCGGTCTCGGGGAAGACGA
AATGTTGCAAGTAGCGCAGGTTCTCATCGAAGCTGGAGCAGACATTGAAG
CAAGGGATTACAGCGGCACACCTGTGCTTCATATTGCTGTGATAAATGGC
CGCCTTCGCATCGTGAAGTTCCTTGTTGAAGCAGGTGCGAGTTTGGAAAG
TGTCGACAGAATCAATTCGACACCTCTTATGGATGCAGCCAACTTCGGAA
TGGTGGCTGGAAGCTTGGCGCAAGCTTGTAGAGATGGCGACGAAGAGGCC
GTGCAACGACTCTTGGACACGGGCGCCGACCCAAATGAGCCAACGCATCT
GGGGTGGTTGTATCCTGTAAACCCGCTCCATGCAGCTGCAAGGAATGGGC
ACTTGTCTATTATGCAAAATTTGATCCAGGCAGGCGCAAACGTGAGCGTC
CCAGACAACCTCGTATTTGACACGGCAGTCCGTGGGCATGCTGACGCGTT
GCGCCTCCTGTTTGCTGCTGGAGCAAGGGTGGATCGCTCAAGCAAGCCCC
CCTTGCTTGCCCTTCGTTCTGCTGACCATTTCGGTCTCGGGGAAGACGAA
ATGTTGCAAGTAGCGCAGGTTCTCATCGAAGCTGGAGCAGACATTGAAGC
AAGGGATTACAGCGGCACACCTGTGCTTCATATTGCTGTGATAAATGGCC
GCCTTCGCATCGTGAAGTTCCTTGTTGAAGCAGGTGCGAGTTTGGAAAGT
GTCGACAGAATCAATTCGACACCTCTTATGGATGCAGCCAACTTCGGA
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