mRNA_M-pyrifera_M_contig123576.4823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123576.4823.1
Unique NamemRNA_M-pyrifera_M_contig123576.4823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: G0PJ38_CAEBE (Uncharacterized protein n=4 Tax=Caenorhabditis TaxID=6237 RepID=G0PJ38_CAEBE)

HSP 1 Score: 53.1 bits (126), Expect = 1.030e-5
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 1 
Query:   31 FQKVIDHWKEDSFGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQF---FVLCADDE--------YSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            F++ ++      FGIPL +L+ RE+ D P ++ +L    + E EK G  +   +VLC  DE           N    +LN+  I D N       VI  ++K FL ELP+PL++ +
Sbjct:  664 FRRTVNPRLHGVFGIPLSRLVQRERRDTPIVLTRL----IQEIEKRGVDYSGLYVLCGSDEKKRMLRAELESNPLGTELNAECIPDTN-------VITCLIKDFLRELPEPLISPQ 768
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: UPI00144697EE (unconventional myosin-IXAb-like isoform X1 n=15 Tax=Eupercaria TaxID=1489922 RepID=UPI00144697EE)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-5
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PLL  E
Sbjct: 1990 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLLTFE 2078
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A8H7SZD6_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SZD6_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.900e-5
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHL------LAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+PLE+L  + + ++PR +  L   +      + +AE+    +   CA D       +  + S  +N   + KY PQ++V VL+ FLLELP+ L+  E
Sbjct:  472 FGVPLEELGKQTQDNVPRFISILLQVIDKSIDTITDAEEKKKVWSTPCALDRVHATCIELNMGSDLLNLEMVQKYEPQLLVAVLRYFLLELPECLMTYE 570
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A1I7V9L6_LOALO (Rho GTPase-activating protein syd-1 n=4 Tax=Onchocercidae TaxID=6296 RepID=A0A1I7V9L6_LOALO)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-5
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:   25 VDFQKVIDHWKEDSFGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQF---FVLCAD--------DEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLN 339
            V F+++++   +  FGIPL++L+ARE  + P ++    S LL E E  G  +   ++LC          +E  +N  + +LN   + D N       V+  ++K FL ELP+PL++
Sbjct:  464 VAFRRIVNCRYDGLFGIPLQRLVAREGRETPLVL----SRLLQEIEHRGVDYSGLYILCGSLEKKRMLREELEINVERARLNVEAVPDTN-------VLACLVKDFLRELPEPLIS 568
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A4W6C1E1_LATCA (Myosin IXAb n=2 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C1E1_LATCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.670e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1171 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1259
[Close]
BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A4W6C9S6_LATCA (Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C9S6_LATCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.690e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1458 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1546
[Close]
BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A4W6C7Q5_LATCA (Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C7Q5_LATCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.700e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1616 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1704
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BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: I3K4R2_ORENI (Uncharacterized protein n=7 Tax=Oreochromis TaxID=8139 RepID=I3K4R2_ORENI)

HSP 1 Score: 52.0 bits (123), Expect = 2.710e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1673 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1761
[Close]
BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A4W6C174_LATCA (Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6C174_LATCA)

HSP 1 Score: 52.0 bits (123), Expect = 2.710e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1712 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1800
[Close]
BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Match: A0A671X7H0_SPAAU (Unconventional myosin-IXAa-like n=1 Tax=Sparus aurata TaxID=8175 RepID=A0A671X7H0_SPAAU)

HSP 1 Score: 52.0 bits (123), Expect = 2.710e-5
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:   67 FGIPLEKLLAREKTDIPRLVEKLCSHLLAEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVLKQFLLELPQPLLNEE 345
            FG+ L +L + E+T +P+LVEKL +++  E   + T+     +     +   +  L+ T +N +NL  Y+  VI  VLKQ+L +LP PL+  E
Sbjct: 1712 FGVELSRLTSEERT-VPQLVEKLINYI--EMHGLYTEGIYRKSGSTNKIKELRQGLD-TDVNSVNLDDYNIHVIASVLKQWLRDLPSPLMTFE 1800
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123576.4823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G0PJ38_CAEBE1.030e-531.90Uncharacterized protein n=4 Tax=Caenorhabditis Tax... [more]
UPI00144697EE1.460e-535.48unconventional myosin-IXAb-like isoform X1 n=15 Ta... [more]
A0A8H7SZD6_9FUNG1.900e-531.31Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
A0A1I7V9L6_LOALO2.560e-530.17Rho GTPase-activating protein syd-1 n=4 Tax=Onchoc... [more]
A0A4W6C1E1_LATCA2.670e-534.41Myosin IXAb n=2 Tax=Lates calcarifer TaxID=8187 Re... [more]
A0A4W6C9S6_LATCA2.690e-534.41Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 Re... [more]
A0A4W6C7Q5_LATCA2.700e-534.41Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 Re... [more]
I3K4R2_ORENI2.710e-534.41Uncharacterized protein n=7 Tax=Oreochromis TaxID=... [more]
A0A4W6C174_LATCA2.710e-534.41Myosin IXAb n=1 Tax=Lates calcarifer TaxID=8187 Re... [more]
A0A671X7H0_SPAAU2.710e-534.41Unconventional myosin-IXAa-like n=1 Tax=Sparus aur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123576contigM-pyrifera_M_contig123576:118..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.1610224-CDS-M-pyrifera_M_contig123576:117..4621622815754.1610224-CDS-M-pyrifera_M_contig123576:117..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123576 118..462 +
1692277553.6478448-CDS-M-pyrifera_M_contig123576:117..4621692277553.6478448-CDS-M-pyrifera_M_contig123576:117..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123576 118..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123576.4823.1prot_M-pyrifera_M_contig123576.4823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123576 118..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123576.4823.1

>prot_M-pyrifera_M_contig123576.4823.1 ID=prot_M-pyrifera_M_contig123576.4823.1|Name=mRNA_M-pyrifera_M_contig123576.4823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MNLKVANFVDFQKVIDHWKEDSFGIPLEKLLAREKTDIPRLVEKLCSHLL
AEAEKVGTQFFVLCADDEYSVNAFKNQLNSTHINDINLYKYSPQVIVDVL
KQFLLELPQPLLNEE
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mRNA from alignment at M-pyrifera_M_contig123576:118..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123576.4823.1 ID=mRNA_M-pyrifera_M_contig123576.4823.1|Name=mRNA_M-pyrifera_M_contig123576.4823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig123576:118..462+ (Macrocystis pyrifera P11B4 male)
ATGAACCTCAAGGTGGCCAACTTCGTCGACTTCCAGAAGGTGATCGACCA
CTGGAAGGAGGACTCGTTCGGCATTCCGCTCGAGAAGCTCCTCGCCCGCG
AGAAGACCGACATCCCCCGCCTGGTGGAGAAGCTCTGTTCGCACCTACTG
GCCGAGGCCGAGAAGGTTGGCACGCAGTTCTTTGTGCTGTGCGCCGACGA
CGAGTACAGCGTGAACGCCTTCAAGAACCAGCTGAACAGCACCCACATCA
ACGACATCAACCTGTACAAGTATTCCCCCCAAGTGATCGTGGACGTGCTC
AAGCAGTTCCTTCTCGAGCTCCCGCAGCCTCTGCTCAACGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123576:118..462+

>mRNA_M-pyrifera_M_contig123576.4823.1 ID=mRNA_M-pyrifera_M_contig123576.4823.1|Name=mRNA_M-pyrifera_M_contig123576.4823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig123576:118..462+ (Macrocystis pyrifera P11B4 male)
ATGAACCTCAAGGTGGCCAACTTCGTCGACTTCCAGAAGGTGATCGACCA
CTGGAAGGAGGACTCGTTCGGCATTCCGCTCGAGAAGCTCCTCGCCCGCG
AGAAGACCGACATCCCCCGCCTGGTGGAGAAGCTCTGTTCGCACCTACTG
GCCGAGGCCGAGAAGGTTGGCACGCAGTTCTTTGTGCTGTGCGCCGACGA
CGAGTACAGCGTGAACGCCTTCAAGAACCAGCTGAACAGCACCCACATCA
ACGACATCAACCTGTACAAGTATTCCCCCCAAGTGATCGTGGACGTGCTC
AAGCAGTTCCTTCTCGAGCTCCCGCAGCCTCTGCTCAACGAGGAGATGAA
CCTCAAGGTGGCCAACTTCGTCGACTTCCAGAAGGTGATCGACCACTGGA
AGGAGGACTCGTTCGGCATTCCGCTCGAGAAGCTCCTCGCCCGCGAGAAG
ACCGACATCCCCCGCCTGGTGGAGAAGCTCTGTTCGCACCTACTGGCCGA
GGCCGAGAAGGTTGGCACGCAGTTCTTTGTGCTGTGCGCCGACGACGAGT
ACAGCGTGAACGCCTTCAAGAACCAGCTGAACAGCACCCACATCAACGAC
ATCAACCTGTACAAGTATTCCCCCCAAGTGATCGTGGACGTGCTCAAGCA
GTTCCTTCTCGAGCTCCCGCAGCCTCTGCTCAACGAGGAG
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